GREMLIN Database
PBPB - Penicillin-binding protein 1B
UniProt: P02919 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10605
Length: 844 (708)
Sequences: 771 (511)
Seq/√Len: 19.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
370_L374_N6.6721.00
414_F441_T5.6741.00
454_A472_T5.0081.00
645_A649_K5.0061.00
533_I580_L4.8891.00
337_R346_Q4.8651.00
388_Q392_D4.6081.00
328_P338_P4.3631.00
529_L673_T4.3311.00
378_R395_S4.3141.00
787_T790_P4.2161.00
387_D390_L4.1121.00
111_V127_L4.0591.00
450_A474_I4.0111.00
381_Q391_Y3.9871.00
391_Y395_S3.9691.00
560_S573_M3.8691.00
577_T580_L3.7731.00
557_Y575_V3.5711.00
668_Y760_P3.5181.00
349_L369_A3.4961.00
563_V573_M3.4831.00
622_A720_I3.4741.00
344_L386_I3.3761.00
553_D734_Y3.2761.00
471_E490_G3.2180.99
515_A596_L3.1550.99
519_T592_T3.1470.99
381_Q388_Q3.1410.99
708_T741_S3.1250.99
223_D227_D3.0190.99
238_Y304_D2.9190.99
500_R726_D2.8760.99
458_I723_V2.8610.99
711_A720_I2.8280.99
508_I512_A2.7880.99
512_A593_W2.7740.98
529_L669_L2.7520.98
247_S250_R2.7180.98
229_L351_V2.7110.98
581_G610_L2.6890.98
483_E641_R2.6690.98
458_I491_S2.6420.98
147_V152_I2.6300.98
231_A383_Q2.6120.98
359_I368_L2.6110.98
522_S595_K2.5740.97
84_G292_Y2.5540.97
477_V622_A2.5310.97
109_R127_L2.4960.97
474_I746_Y2.4740.97
173_L180_L2.4390.96
240_H298_D2.4350.96
83_Y289_N2.4060.96
236_H244_S2.3920.96
296_I300_R2.3740.96
418_V440_T2.3660.96
678_V683_G2.3610.96
414_F442_F2.3540.96
515_A624_A2.3360.95
784_P790_P2.3020.95
345_D397_R2.2780.95
683_G686_L2.2710.95
539_A549_S2.2640.95
723_V742_I2.2330.94
124_M154_M2.2160.94
302_S305_R2.2040.94
697_G710_F2.1960.94
676_Q680_R2.1660.93
678_V686_L2.1430.93
254_A263_Q2.1350.93
420_Q503_Q2.1200.92
258_A262_V2.1180.92
570_T680_R2.1070.92
161_F439_F2.0890.92
338_P341_E2.0890.92
378_R391_Y2.0860.92
784_P787_T2.0820.92
125_V147_V2.0760.92
566_V676_Q2.0660.91
551_Q555_R2.0380.91
674_M713_I2.0190.90
273_V294_A1.9950.90
217_P220_G1.9770.89
476_V719_T1.9560.89
707_D722_W1.9480.89
154_M171_A1.9470.89
671_L713_I1.9270.88
289_N292_Y1.9260.88
224_L347_Q1.9020.87
225_L327_F1.8880.87
596_L662_V1.8870.87
151_S172_R1.8790.87
124_M152_I1.8750.87
462_K491_S1.8660.86
136_V144_E1.8660.86
473_A618_P1.8640.86
228_T380_L1.8300.85
121_K147_V1.8280.85
222_P339_V1.8170.85
591_E595_K1.8100.85
784_P788_S1.7880.84
88_D92_R1.7850.84
236_H239_E1.7760.83
707_D724_G1.7740.83
359_I365_N1.7520.83
665_Q762_D1.7470.82
721_T742_I1.7460.82
111_V444_S1.7390.82
553_D573_M1.7360.82
507_S702_T1.7360.82
776_C780_M1.7300.82
479_R718_V1.7040.81
560_S576_P1.6830.80
578_V611_L1.6820.80
244_S247_S1.6660.79
483_E638_S1.6440.78
85_V88_D1.6230.77
527_Y584_L1.6210.77
760_P763_I1.6180.77
86_Y89_Q1.6040.76
377_L391_Y1.5960.76
635_A658_A1.5940.76
717_T750_Q1.5850.76
228_T351_V1.5800.75
506_R707_D1.5800.75
456_E745_R1.5720.75
254_A258_A1.5630.75
743_Y747_L1.5570.74
381_Q395_S1.5480.74
785_V788_S1.5410.73
228_T385_I1.5340.73
127_L131_T1.5330.73
153_E172_R1.5310.73
273_V293_M1.5290.73
278_L281_E1.5200.72
567_D571_R1.5140.72
255_N291_A1.4990.71
162_P386_I1.4990.71
508_I621_V1.4930.71
92_R96_D1.4910.71
216_V221_F1.4860.71
485_R717_T1.4810.70
80_I84_G1.4800.70
623_Q637_L1.4780.70
474_I488_V1.4760.70
91_I117_M1.4610.69
671_L674_M1.4440.68
598_V624_A1.4430.68
517_Y577_T1.4340.68
686_L744_Q1.4300.68
121_K125_V1.4270.67
516_T577_T1.4230.67
588_A591_E1.4040.66
690_Y695_L1.4000.66
228_T737_S1.4000.66
268_L354_V1.3960.66
476_V746_Y1.3960.66
224_L228_T1.3880.65
298_D752_P1.3870.65
450_A486_A1.3840.65
314_V504_A1.3830.65
527_Y565_L1.3760.65
785_V789_D1.3700.64
618_P622_A1.3680.64
536_A579_N1.3630.64
564_M567_D1.3600.64
734_Y740_M1.3590.64
330_A703_N1.3490.63
506_R724_G1.3470.63
125_V152_I1.3460.63
617_T620_E1.3440.63
613_A668_Y1.3430.63
524_P531_T1.3350.62
671_L696_A1.3300.62
533_I577_T1.3240.61
344_L394_L1.3210.61
511_L621_V1.3180.61
746_Y750_Q1.3150.61
243_I256_L1.3060.60
218_R221_F1.3040.60
450_A746_Y1.3000.60
226_V238_Y1.2970.60
314_V736_A1.2940.60
218_R226_V1.2940.60
118_T124_M1.2900.59
284_Y288_A1.2890.59
268_L567_D1.2880.59
368_L371_E1.2870.59
249_G736_A1.2820.59
518_L662_V1.2790.59
146_T153_E1.2640.58
521_L673_T1.2630.58
676_Q679_Q1.2590.57
127_L444_S1.2580.57
148_Q151_S1.2580.57
171_A195_F1.2580.57
376_V648_G1.2540.57
662_V667_A1.2530.57
230_L725_R1.2520.57
139_M155_I1.2490.57
787_T791_Q1.2450.57
508_I616_L1.2440.57
152_I175_F1.2440.57
475_V484_V1.2370.56
618_P720_I1.2360.56
100_W104_A1.2360.56
232_T375_L1.2140.55
250_R265_A1.2140.55
768_V773_N1.2070.54
235_R357_A1.2030.54
268_L512_A1.2010.54
515_A592_T1.2010.54
450_A454_A1.1940.53
767_G776_C1.1930.53
99_V305_R1.1880.53
139_M228_T1.1860.53
725_R729_Q1.1850.53
80_I150_N1.1840.53
135_Q147_V1.1830.53
135_Q145_F1.1800.53
619_I622_A1.1730.52
357_A394_L1.1720.52
95_I99_V1.1640.51
94_R100_W1.1630.51
628_I673_T1.1630.51
218_R308_E1.1620.51
314_V354_V1.1600.51
479_R630_S1.1550.51
551_Q557_Y1.1540.51
163_D196_R1.1540.51
139_M153_E1.1520.51
595_K634_R1.1500.51
592_T627_T1.1460.50
633_N660_R1.1420.50
223_D226_V1.1400.50
91_I100_W1.1400.50
275_N313_E1.1390.50
773_N780_M1.1380.50
638_S654_S1.1270.49
158_P346_Q1.1260.49
502_M619_I1.1260.49
147_V150_N1.1240.49
244_S265_A1.1240.49
226_V304_D1.1230.49
148_Q172_R1.1230.49
617_T736_A1.1200.49
438_I443_D1.1110.48
735_G739_A1.1100.48
417_L502_M1.1100.48
706_V728_N1.1060.48
85_V89_Q1.1030.48
454_A474_I1.1020.48
489_G501_A1.1000.47
421_E425_K1.0960.47
136_V139_M1.0910.47
780_M784_P1.0890.47
550_P739_A1.0870.47
553_D702_T1.0850.46
707_D726_D1.0780.46
450_A674_M1.0740.46
265_A311_M1.0650.45
418_V646_E1.0650.45
154_M175_F1.0620.45
207_S322_N1.0620.45
392_D395_S1.0600.45
198_D492_E1.0580.45
450_A453_A1.0580.45
674_M696_A1.0560.45
563_V576_P1.0540.45
255_N259_G1.0510.44
225_L316_L1.0500.44
667_A670_T1.0500.44
346_Q354_V1.0490.44
270_Q290_E1.0490.44
521_L669_L1.0490.44
515_A598_V1.0450.44
218_R304_D1.0440.44
227_D304_D1.0420.44
328_P522_S1.0410.44
772_G780_M1.0410.44
491_S613_A1.0380.44
662_V666_A1.0380.44
601_D620_E1.0370.43
110_M320_G1.0360.43
114_E117_M1.0360.43
723_V739_A1.0340.43
234_D240_H1.0330.43
288_A292_Y1.0290.43
339_V736_A1.0290.43
785_V790_P1.0280.43
105_A204_M1.0230.43
136_V146_T1.0230.43
518_L666_A1.0220.43
617_T674_M1.0200.42
275_N355_K1.0190.42
446_A746_Y1.0190.42
554_D573_M1.0180.42
114_E167_G1.0180.42
114_E478_D1.0150.42
390_L587_P1.0140.42
557_Y576_P1.0090.42
258_A298_D1.0080.42
134_R153_E1.0060.42
278_L286_R1.0060.42
92_R414_F1.0050.41
95_I309_L1.0050.41
361_N373_R1.0030.41
351_V386_I1.0020.41
773_N776_C1.0020.41
327_F354_V1.0000.41
345_D373_R0.9980.41
268_L540_L0.9970.41
352_G375_L0.9960.41
245_L249_G0.9960.41
634_R661_A0.9960.41
640_L643_V0.9940.41
265_A662_V0.9920.41
560_S563_V0.9910.41
453_A742_I0.9910.41
514_P569_L0.9860.40
711_A790_P0.9830.40
268_L314_V0.9810.40
768_V776_C0.9810.40
529_L628_I0.9800.40
285_W289_N0.9800.40
395_S578_V0.9760.40
554_D560_S0.9740.40
496_A702_T0.9710.39
516_T580_L0.9710.39
769_D773_N0.9710.39
198_D223_D0.9690.39
300_R578_V0.9610.39
115_P120_S0.9580.39
243_I686_L0.9570.39
374_N450_A0.9570.39
672_W675_Q0.9550.38
539_A723_V0.9540.38
114_E207_S0.9530.38
457_G742_I0.9530.38
530_N773_N0.9520.38
272_L309_L0.9510.38
231_A631_G0.9470.38
519_T589_V0.9460.38
695_L714_D0.9430.38
446_A750_Q0.9410.38
498_Y706_V0.9390.37
783_L790_P0.9330.37
97_G100_W0.9310.37
523_Q580_L0.9290.37
186_M331_S0.9290.37
788_S791_Q0.9280.37
83_Y87_L0.9260.37
256_L505_R0.9260.37
386_I566_V0.9260.37
628_I670_T0.9240.37
83_Y292_Y0.9240.37
595_K679_Q0.9230.37
129_E145_F0.9230.37
586_L610_L0.9220.36
203_T430_V0.9190.36
96_D102_L0.9190.36
379_L382_Q0.9130.36
118_T126_K0.9130.36
478_D485_R0.9120.36
717_T746_Y0.9090.36
347_Q361_N0.9070.36
120_S449_A0.9050.35
122_N158_P0.9040.35
670_T713_I0.9000.35
356_G360_Y0.9000.35
125_V146_T0.8960.35
115_P147_V0.8960.35
268_L458_I0.8920.35
451_E718_V0.8910.35
85_V120_S0.8900.35
112_N207_S0.8890.35
102_L292_Y0.8870.34
202_I418_V0.8870.34
119_I122_N0.8870.34
678_V695_L0.8860.34
629_A696_A0.8860.34
260_R284_Y0.8830.34
450_A488_V0.8830.34
158_P742_I0.8820.34
139_M164_S0.8790.34
140_T154_M0.8790.34
117_M160_D0.8780.34
258_A578_V0.8780.34
121_K149_A0.8760.34
365_N370_L0.8760.34
146_T151_S0.8750.34
563_V568_A0.8750.34
117_M127_L0.8740.34
86_Y90_K0.8730.34
96_D132_Q0.8720.34
120_S137_S0.8690.33
137_S168_Q0.8690.33
516_T606_V0.8670.33
163_D295_L0.8670.33
366_P373_R0.8670.33
92_R101_Q0.8660.33
399_L589_V0.8660.33
780_M788_S0.8660.33
550_P607_P0.8660.33
548_W740_M0.8650.33
136_V155_I0.8640.33
161_F169_V0.8620.33
122_N390_L0.8600.33
135_Q146_T0.8600.33
215_F221_F0.8590.33
582_M607_P0.8580.33
593_W624_A0.8580.33
311_M391_Y0.8570.33
471_E713_I0.8540.33
247_S736_A0.8530.33
565_L580_L0.8500.32
206_S560_S0.8500.32
669_L673_T0.8500.32
82_I125_V0.8480.32
769_D772_G0.8480.32
517_Y535_D0.8460.32
83_Y674_M0.8450.32
556_R674_M0.8440.32
91_I152_I0.8440.32
85_V93_S0.8440.32
252_V255_N0.8440.32
280_S283_S0.8440.32
643_V651_L0.8440.32
705_N732_K0.8420.32
686_L747_L0.8420.32
90_K566_V0.8410.32
478_D564_M0.8410.32
426_L573_M0.8350.32
325_R524_P0.8350.32
373_R707_D0.8340.31
316_L518_L0.8340.31
219_S651_L0.8340.31
598_V616_L0.8330.31
297_M438_I0.8330.31
577_T699_T0.8330.31
668_Y763_I0.8320.31
283_S481_S0.8310.31
272_L517_Y0.8290.31
124_M147_V0.8290.31
80_I126_K0.8270.31
96_D99_V0.8260.31
85_V243_I0.8250.31
130_A135_Q0.8250.31
521_L527_Y0.8250.31
111_V130_A0.8240.31
744_Q748_A0.8230.31
367_K564_M0.8230.31
255_N258_A0.8230.31
581_G725_R0.8220.31
259_G263_Q0.8220.31
577_T718_V0.8220.31
427_G430_V0.8200.31
125_V129_E0.8190.31
125_V148_Q0.8160.30
202_I629_A0.8150.30
484_V619_I0.8140.30
243_I247_S0.8140.30
202_I225_L0.8130.30
226_V243_I0.8110.30
484_V711_A0.8110.30
140_T150_N0.8090.30
331_S384_Q0.8050.30
644_I650_V0.8050.30
149_A172_R0.8050.30
82_I228_T0.8040.30
471_E726_D0.8020.30
203_T244_S0.8020.30
135_Q148_Q0.8020.30
121_K152_I0.8010.30
674_M763_I0.8000.30
452_K749_N0.7990.30
540_L583_A0.7980.30
114_E656_P0.7980.30
135_Q150_N0.7960.29
664_A762_D0.7950.29
421_E714_D0.7940.29
154_M757_L0.7930.29
268_L309_L0.7920.29
139_M158_P0.7910.29
583_A619_I0.7900.29
117_M124_M0.7890.29
106_V640_L0.7890.29
295_L645_A0.7850.29
139_M144_E0.7850.29
120_S167_G0.7850.29
535_D561_G0.7810.29
120_S138_K0.7790.29
234_D724_G0.7790.29
521_L554_D0.7790.29
695_L743_Y0.7780.28
274_K313_E0.7780.28
294_A598_V0.7770.28
123_E445_V0.7770.28
150_N172_R0.7760.28
373_R739_A0.7750.28
108_G127_L0.7740.28
84_G150_N0.7740.28
378_R382_Q0.7710.28
227_D385_I0.7710.28
723_V741_S0.7700.28
515_A628_I0.7700.28
471_E627_T0.7700.28
421_E743_Y0.7700.28
199_P350_L0.7690.28
89_Q132_Q0.7690.28
417_L487_M0.7690.28
683_G699_T0.7680.28
129_E167_G0.7670.28
139_M380_L0.7660.28
261_T282_R0.7630.28
573_M576_P0.7630.28
594_I599_P0.7600.28
149_A171_A0.7590.27
590_T605_P0.7580.27
458_I462_K0.7570.27
258_A361_N0.7570.27
712_G743_Y0.7560.27
346_Q645_A0.7560.27
451_E699_T0.7560.27
122_N167_G0.7560.27
377_L516_T0.7550.27
81_A118_T0.7550.27
228_T453_A0.7550.27
220_G613_A0.7540.27
780_M783_L0.7540.27
311_M327_F0.7530.27
532_W562_R0.7520.27
225_L347_Q0.7520.27
151_S171_A0.7520.27
296_I299_A0.7490.27
240_H535_D0.7490.27
269_T290_E0.7490.27
566_V672_W0.7480.27
367_K370_L0.7470.27
569_L577_T0.7470.27
251_A259_G0.7440.27
272_L722_W0.7430.27
452_K456_E0.7400.27
158_P166_E0.7400.27
708_T738_G0.7400.27
126_K150_N0.7390.26
135_Q144_E0.7390.26
214_L702_T0.7390.26
161_F166_E0.7370.26
90_K118_T0.7360.26
298_D746_Y0.7360.26
114_E276_L0.7350.26
272_L506_R0.7350.26
390_L393_M0.7350.26
155_I170_R0.7340.26
371_E628_I0.7330.26
81_A93_S0.7330.26
129_E141_R0.7330.26
589_V592_T0.7330.26
80_I147_V0.7320.26
292_Y717_T0.7310.26
388_Q391_Y0.7300.26
84_G169_V0.7300.26
250_R263_Q0.7290.26
539_A547_V0.7290.26
137_S153_E0.7280.26
565_L627_T0.7280.26
633_N658_A0.7270.26
627_T634_R0.7260.26
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763_I773_N0.5640.19
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560_S721_T0.5630.19
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101_Q162_P0.5620.19
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80_I151_S0.5560.18
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118_T122_N0.5560.18
90_K120_S0.5560.18
135_Q138_K0.5560.18
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136_V380_L0.5530.18
774_F780_M0.5530.18
527_Y583_A0.5510.18
125_V136_V0.5500.18
274_K286_R0.5490.18
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668_Y759_P0.5470.18
122_N140_T0.5460.18
398_P666_A0.5460.18
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135_Q139_M0.5430.18
324_I333_Y0.5420.18
512_A519_T0.5420.18
474_I721_T0.5420.18
135_Q158_P0.5410.18
256_L346_Q0.5410.18
550_P740_M0.5410.18
130_A137_S0.5390.18
675_Q678_V0.5390.18
90_K93_S0.5390.18
528_R637_L0.5380.18
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352_G432_D0.5330.18
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146_T160_D0.5320.18
447_Q621_V0.5320.18
154_M207_S0.5320.18
449_A664_A0.5310.18
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123_E314_V0.5310.18
109_R139_M0.5310.18
232_T634_R0.5300.17
91_I336_G0.5290.17
273_V297_M0.5290.17
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88_D93_S0.5230.17
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330_A452_K0.5220.17
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300_R325_R0.5210.17
538_I761_E0.5210.17
715_G757_L0.5210.17
219_S521_L0.5200.17
220_G790_P0.5200.17
709_W724_G0.5190.17
113_L126_K0.5180.17
121_K137_S0.5180.17
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550_P723_V0.5170.17
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168_Q331_S0.5170.17
115_P167_G0.5170.17
286_R514_P0.5170.17
373_R724_G0.5160.17
422_L438_I0.5160.17
221_F579_N0.5150.17
622_A719_T0.5150.17
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727_N736_A0.5140.17
514_P628_I0.5140.17
95_I305_R0.5130.17
598_V673_T0.5130.17
243_I481_S0.5120.17
361_N673_T0.5120.17
81_A140_T0.5110.17
335_F711_A0.5110.17
355_K368_L0.5100.17
374_N395_S0.5100.17
247_S673_T0.5100.17
490_G493_P0.5100.17
309_L508_I0.5100.17
518_L592_T0.5100.17
786_W790_P0.5090.17
328_P339_V0.5080.17
102_L115_P0.5080.17
533_I538_I0.5080.17
152_I169_V0.5070.17
282_R723_V0.5070.17
331_S551_Q0.5070.17
85_V97_G0.5060.17
105_A145_F0.5060.17
268_L378_R0.5050.17
86_Y115_P0.5050.17
117_M150_N0.5050.17
126_K146_T0.5050.17
130_A174_T0.5040.17
196_R199_P0.5040.17
99_V434_S0.5040.17
733_L738_G0.5040.17
336_G357_A0.5030.17
142_P155_I0.5030.17
120_S456_E0.5020.16
675_Q694_H0.5020.16
592_T662_V0.5020.16
151_S174_T0.5020.16
220_G480_F0.5020.16
277_F618_P0.5020.16
93_S482_G0.5020.16
159_F435_G0.5020.16
84_G153_E0.5010.16
255_N261_T0.5010.16
119_I140_T0.5000.16
277_F282_R0.5000.16
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3vmaA 1 0.8353 100 0.223 Contact Map
4oonA 1 0.4526 100 0.364 Contact Map
3udfA 2 0.5782 100 0.412 Contact Map
2jchA 1 0.4941 100 0.415 Contact Map
2olvA 1 0.6765 100 0.453 Contact Map
3zg9B 1 0.5154 100 0.563 Contact Map
2y2mA 2 0.5273 100 0.681 Contact Map
3un7A 1 0.4218 100 0.73 Contact Map
2v2fF 1 0.4111 100 0.732 Contact Map
2oqoA 2 0.2145 100 0.745 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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