GREMLIN Database
RS7 - 30S ribosomal protein S7
UniProt: P02359 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10906
Length: 179 (154)
Sequences: 2294 (1050)
Seq/√Len: 84.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
20_S63_E4.3611.00
30_L43_V3.4161.00
70_R96_R2.8281.00
43_V47_L2.7281.00
56_K64_V2.6761.00
106_E110_K2.5911.00
45_S117_A2.5091.00
74_E95_R2.4161.00
28_N36_K2.4051.00
69_V104_I2.3571.00
26_F101_M2.2681.00
136_K140_D2.2141.00
49_T118_L2.1661.00
67_E70_R2.1211.00
51_A57_S2.1001.00
9_Q94_V2.0741.00
26_F43_V2.0341.00
22_L97_N2.0321.00
42_I116_M2.0171.00
107_A134_A1.9951.00
47_L62_F1.9751.00
54_S125_S1.9441.00
126_D131_K1.9271.00
69_V134_A1.8881.00
49_T121_A1.8871.00
50_L61_A1.8701.00
51_A58_E1.8671.00
57_S60_E1.8671.00
72_T96_R1.8381.00
130_N135_V1.8091.00
26_F62_F1.7751.00
125_S128_A1.7161.00
48_E51_A1.6841.00
70_R100_A1.6391.00
26_F105_V1.6211.00
23_L47_L1.6141.00
23_L43_V1.5881.00
49_T117_A1.5661.00
50_L125_S1.5391.00
61_A128_A1.5311.00
113_D119_R1.4940.99
29_I101_M1.4160.99
63_E67_E1.3730.99
66_L100_A1.3650.99
11_K21_E1.3410.99
38_T41_S1.3350.99
137_K141_V1.3010.98
113_D122_N1.3010.98
115_S118_L1.3000.98
70_R97_N1.2730.98
30_L39_A1.2720.98
56_K60_E1.2530.98
50_L124_L1.2460.98
25_K97_N1.2420.98
47_L58_E1.2330.98
5_R8_G1.2250.98
50_L54_S1.2040.97
69_V124_L1.1910.97
66_L135_V1.1730.97
107_A133_T1.1590.97
29_I97_N1.1410.96
28_N31_M1.1300.96
66_L101_M1.1230.96
98_A102_R1.1170.96
117_A121_A1.1150.96
77_S84_T1.1020.96
135_V138_R1.1010.96
32_V109_R1.0960.96
26_F124_L1.0930.96
95_R99_L1.0860.95
101_M105_V1.0780.95
89_V156_W1.0560.95
17_K48_E1.0400.94
29_I105_V1.0090.93
47_L50_L1.0000.93
22_L66_L0.9990.93
26_F66_L0.9980.93
27_V40_E0.9880.92
75_V86_Q0.9850.92
37_S40_E0.9610.91
107_A110_K0.9600.91
68_N130_N0.9590.91
15_D44_Y0.9480.91
99_L102_R0.9460.91
25_K31_M0.9440.91
113_D131_K0.9420.90
122_N126_D0.9390.90
86_Q148_N0.9370.90
64_V128_A0.9300.90
68_N127_A0.9290.90
76_K89_V0.9210.89
46_A120_L0.9110.89
68_N128_A0.9060.89
99_L103_W0.9030.89
85_Y151_F0.8770.87
146_E149_K0.8690.87
54_S128_A0.8600.86
76_K87_V0.8590.86
81_G85_Y0.8560.86
64_V67_E0.8440.85
12_I24_A0.8430.85
104_I124_L0.8330.84
60_E64_V0.8180.83
5_R77_S0.7860.81
49_T53_R0.7840.80
32_V105_V0.7750.80
111_R122_N0.7730.79
141_V156_W0.7710.79
6_V9_Q0.7680.79
114_K119_R0.7590.78
48_E52_Q0.7560.78
79_R86_Q0.7550.78
4_R84_T0.7540.78
74_E99_L0.7540.78
56_K61_A0.7540.78
23_L59_L0.7540.78
77_S89_V0.7530.78
115_S122_N0.7480.77
23_L62_F0.7430.77
18_F44_Y0.7410.77
45_S48_E0.7390.76
41_S45_S0.7200.74
67_E87_V0.7200.74
22_L101_M0.7200.74
139_E143_R0.7140.74
72_T130_N0.7130.74
80_V90_E0.7020.73
29_I98_A0.7020.73
24_A40_E0.7000.72
16_P40_E0.6920.71
81_G150_A0.6920.71
65_A68_N0.6910.71
69_V135_V0.6870.71
5_R101_M0.6810.70
30_L42_I0.6770.70
77_S86_Q0.6750.70
45_S118_L0.6730.69
112_G149_K0.6710.69
79_R145_A0.6680.69
6_V61_A0.6670.69
47_L128_A0.6640.68
104_I134_A0.6640.68
53_R125_S0.6640.68
53_R122_N0.6620.68
7_I10_R0.6540.67
29_I38_T0.6480.66
50_L121_A0.6470.66
112_G115_S0.6430.66
5_R89_V0.6410.66
108_A111_R0.6400.66
109_R116_M0.6400.66
91_V99_L0.6380.65
22_L32_V0.6370.65
136_K139_E0.6370.65
25_K29_I0.6350.65
67_E96_R0.6320.65
50_L128_A0.6310.64
46_A50_L0.6290.64
85_Y99_L0.6250.64
83_S91_V0.6240.64
49_T52_Q0.6220.63
31_M35_K0.6190.63
79_R144_M0.6190.63
111_R115_S0.6140.62
6_V125_S0.6140.62
15_D18_F0.6070.61
131_K154_Y0.6070.61
73_V77_S0.6040.61
103_W137_K0.6030.61
108_A124_L0.6020.61
22_L63_E0.6010.61
78_R85_Y0.5950.60
93_P96_R0.5940.60
138_R142_H0.5920.60
29_I66_L0.5880.59
3_R10_R0.5820.58
83_S89_V0.5820.58
100_A135_V0.5790.58
108_A120_L0.5780.58
76_K91_V0.5770.58
79_R87_V0.5750.57
45_S122_N0.5740.57
104_I127_A0.5670.56
17_K51_A0.5660.56
54_S61_A0.5640.56
68_N95_R0.5640.56
82_G151_F0.5630.56
79_R83_S0.5630.56
103_W141_V0.5620.56
22_L96_R0.5560.55
11_K41_S0.5540.55
21_E24_A0.5530.54
38_T105_V0.5520.54
53_R154_Y0.5500.54
153_H156_W0.5490.54
141_V144_M0.5440.53
37_S41_S0.5440.53
73_V145_A0.5440.53
94_V98_A0.5400.53
80_V156_W0.5390.53
127_A134_A0.5380.52
10_R94_V0.5380.52
113_D116_M0.5380.52
34_G123_E0.5370.52
90_E93_P0.5360.52
80_V87_V0.5350.52
22_L59_L0.5330.52
20_S47_L0.5320.52
78_R86_Q0.5300.51
94_V97_N0.5300.51
60_E63_E0.5260.51
30_L105_V0.5230.50
23_L130_N0.5210.50
86_Q144_M0.5210.50
57_S97_N0.5200.50
96_R143_R0.5190.50
87_V150_A0.5190.50
78_R87_V0.5180.50
124_L128_A0.5180.50
112_G122_N0.5180.50
99_L147_A0.5170.50
36_K40_E0.5130.49
14_P18_F0.5110.49
118_L122_N0.5100.49
72_T138_R0.5040.48
146_E151_F0.5030.48
71_P103_W0.5020.48
140_D156_W0.5020.48
49_T125_S0.5020.48
31_M96_R0.5000.47
8_G12_I0.5000.47
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4kiyG 1 0.8436 100 0.034 Contact Map
1husA 1 0.7765 100 0.135 Contact Map
3bbnG 1 0.8603 100 0.157 Contact Map
1rssA 1 0.7821 100 0.158 Contact Map
3gtyS 1 0.8324 100 0.161 Contact Map
5aj3G 1 0.8771 100 0.168 Contact Map
4tp8G 1 0.8436 100 0.188 Contact Map
3zey2 1 0.8324 100 0.283 Contact Map
4bpeG 1 0.8324 100 0.284 Contact Map
3j7aI 1 0.7821 100 0.288 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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