GREMLIN Database
CARB - Carbamoyl-phosphate synthase large chain
UniProt: P00968 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10135
Length: 1073 (1050)
Sequences: 2884 (1182)
Seq/√Len: 36.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
357_T394_S6.9391.00
467_E471_R5.5661.00
226_D273_R4.7331.00
9_S43_R4.5851.00
9_S45_I4.5291.00
706_K731_E4.4321.00
563_M599_V4.3611.00
289_N292_N4.3361.00
684_R819_E4.3021.00
82_R111_F4.2961.00
104_R124_D4.2681.00
69_I98_C4.2621.00
867_R872_K4.1741.00
667_D677_R4.1141.00
947_L961_A3.7611.00
155_A192_C3.6321.00
560_E636_K3.5841.00
623_L627_L3.5711.00
441_D445_A3.5551.00
192_C204_L3.5381.00
138_K274_E3.4061.00
289_N294_R3.4031.00
400_R625_D3.4031.00
218_M233_S3.3861.00
921_G926_E3.2841.00
10_I42_Y3.2781.00
811_Q815_K3.2531.00
799_Y888_Y3.2431.00
944_R970_E3.2181.00
771_E873_S3.1421.00
237_F466_I3.1021.00
75_R110_E3.0911.00
264_M295_L3.0781.00
439_I452_V3.0591.00
79_E111_F3.0571.00
963_K1055_N3.0541.00
233_S253_A3.0441.00
78_I111_F2.9981.00
873_S876_E2.9891.00
599_V629_I2.9881.00
443_F463_L2.9801.00
712_L752_L2.9551.00
145_R208_E2.9391.00
472_L495_K2.9201.00
75_R79_E2.9011.00
518_D631_R2.8981.00
42_Y328_V2.8981.00
156_L189_E2.8701.00
160_A185_R2.8341.00
872_K876_E2.8141.00
75_R111_F2.7681.00
803_Q807_D2.7301.00
702_V735_R2.7201.00
551_C632_I2.7151.00
450_D460_R2.7141.00
766_A813_V2.7051.00
43_R63_A2.7021.00
767_I868_V2.6781.00
980_V984_A2.6751.00
4_R114_T2.6151.00
130_R134_V2.5871.00
425_R451_G2.5651.00
710_Y731_E2.5621.00
563_M630_V2.5621.00
443_F449_V2.5581.00
486_A490_R2.5551.00
395_L436_I2.5501.00
10_I328_V2.5391.00
965_L987_N2.5291.00
693_A707_E2.5281.00
185_R189_E2.5231.00
149_A158_V2.5191.00
392_Q465_Q2.4841.00
892_E931_A2.4551.00
74_V98_C2.4391.00
559_R595_E2.4351.00
159_A164_F2.3811.00
151_T154_E2.3771.00
388_G393_E2.3771.00
490_R494_R2.3751.00
978_A988_P2.3621.00
873_S877_Q2.3601.00
630_V659_V2.3581.00
951_E954_K2.3451.00
688_K812_Q2.3301.00
71_W101_E2.3210.99
591_E863_K2.3110.99
964_L1051_A2.2850.99
75_R105_Q2.2730.99
693_A704_K2.2690.99
730_D733_D2.2670.99
958_V980_V2.2590.99
814_Q818_F2.2470.99
150_H203_E2.2430.99
47_V77_I2.2430.99
668_A821_Q2.2280.99
475_K491_Q2.2250.99
141_L270_A2.2150.99
208_E294_R2.2100.99
864_V877_Q2.2050.99
218_M253_A2.1970.99
272_L284_V2.1950.99
39_E325_K2.1750.99
741_A745_S2.1620.99
447_L451_G2.1540.99
563_M629_I2.1530.99
509_R512_E2.1490.99
970_E989_R2.1430.99
164_F185_R2.1390.99
1014_I1047_G2.1230.99
514_R627_L2.1210.99
808_V811_Q2.1150.99
958_V984_A2.1140.99
142_E294_R2.1090.99
420_A423_K2.1060.99
944_R972_D2.1050.99
772_M875_A2.0930.99
488_F492_L2.0930.99
655_E667_D2.0870.99
396_Q497_F2.0840.99
443_F452_V2.0830.99
776_G861_L2.0800.99
76_K79_E2.0700.99
687_L812_Q2.0600.99
147_G161_D2.0590.99
100_L120_A2.0400.99
271_V297_V2.0300.99
392_Q468_E2.0240.99
372_D433_A2.0170.99
71_W105_Q2.0110.99
762_V801_L2.0050.98
511_A656_A2.0050.98
242_I431_A2.0050.98
288_V295_L2.0040.98
377_Q899_K2.0020.98
702_V731_E1.9990.98
449_V463_L1.9970.98
141_L267_A1.9900.98
731_E735_R1.9880.98
518_D523_H1.9740.98
479_V485_N1.9690.98
978_A990_L1.9680.98
164_F184_N1.9670.98
652_R656_A1.9610.98
439_I458_I1.9590.98
421_L445_A1.9370.98
75_R107_V1.9360.98
991_V1004_R1.9280.98
184_N187_E1.9180.98
171_S203_E1.9140.98
741_A750_V1.9020.98
516_L520_Y1.8980.98
670_D677_R1.8960.98
697_A700_M1.8910.98
670_D718_Y1.8890.98
66_I918_M1.8870.98
151_T202_K1.8760.98
159_A166_C1.8750.98
182_A191_I1.8740.98
804_E835_N1.8730.98
150_H154_E1.8720.98
592_D867_R1.8620.98
691_A707_E1.8560.97
591_E867_R1.8550.97
703_E707_E1.8540.97
474_E477_A1.8500.97
47_V74_V1.8450.97
78_I113_V1.8420.97
999_P1003_D1.8410.97
103_E120_A1.8400.97
764_V813_V1.8400.97
40_E325_K1.8390.97
79_E110_E1.8290.97
253_A261_Y1.7930.97
448_S451_G1.7870.97
688_K836_E1.7840.97
499_D517_R1.7730.97
9_S63_A1.7630.97
147_G158_V1.7620.97
443_F466_I1.7550.96
523_H631_R1.7550.96
617_Y633_E1.7450.96
768_C818_F1.7440.96
196_L202_K1.7410.96
736_R740_T1.7400.96
428_L442_A1.7280.96
390_T548_E1.7250.96
762_V832_V1.7230.96
562_I662_I1.7180.96
135_A274_E1.7100.96
168_I204_L1.7100.96
453_F463_L1.7080.96
1013_I1033_A1.7060.96
695_V704_K1.7040.96
742_V750_V1.6940.96
681_A816_L1.6890.96
124_D131_R1.6840.96
440_A444_R1.6670.95
623_L653_A1.6560.95
762_V809_M1.6530.95
808_V812_Q1.6520.95
384_V401_G1.6460.95
802_S805_I1.6450.95
515_K519_Q1.6440.95
103_E109_E1.6360.95
440_A466_I1.6270.95
953_D1016_T1.6250.95
168_I206_I1.6220.94
183_Y187_E1.6180.94
560_E594_Y1.6160.94
972_D1010_Y1.6100.94
802_S835_N1.6010.94
538_T541_A1.5990.94
691_A754_H1.5930.94
766_A826_M1.5920.94
468_E495_K1.5920.94
86_V113_V1.5880.94
832_V837_V1.5880.94
133_D137_K1.5870.94
407_T504_K1.5860.94
260_E293_G1.5800.94
164_F188_F1.5740.94
592_D870_A1.5740.94
73_V77_I1.5710.93
724_A741_A1.5710.93
125_K274_E1.5710.93
275_I300_M1.5700.93
71_W74_V1.5690.93
1031_R1035_Q1.5550.93
168_I188_F1.5540.93
218_M268_S1.5480.93
469_L497_F1.5470.93
623_L657_A1.5370.93
688_K808_V1.5370.93
681_A819_E1.5340.93
798_A806_Q1.5310.93
808_V837_V1.5300.93
485_N488_F1.5300.93
224_K331_T1.5280.92
489_L516_L1.5230.92
679_Q689_Q1.5200.92
993_K1025_D1.5160.92
71_W98_C1.5130.92
149_A154_E1.5070.92
513_I516_L1.5060.92
516_L519_Q1.5030.92
589_L596_T1.5020.92
391_Q461_W1.5000.92
502_L506_A1.4980.92
762_V837_V1.4950.92
589_L870_A1.4930.92
807_D810_R1.4860.91
472_L492_L1.4830.91
528_R543_M1.4820.91
741_A744_V1.4770.91
107_V111_F1.4750.91
805_I837_V1.4740.91
805_I832_V1.4680.91
510_E514_R1.4680.91
923_T926_E1.4660.91
476_V492_L1.4560.91
447_L452_V1.4530.90
805_I835_N1.4510.90
225_N331_T1.4470.90
1005_I1038_V1.4470.90
793_A892_E1.4460.90
395_L409_F1.4420.90
237_F248_I1.4410.90
421_L451_G1.4400.90
767_I861_L1.4370.90
134_V138_K1.4320.90
682_V839_L1.4260.90
982_G990_L1.4220.89
636_K660_P1.4150.89
639_I866_A1.4150.89
774_L879_V1.4120.89
425_R447_L1.4080.89
425_R455_L1.4080.89
668_A671_R1.4080.89
562_I870_A1.4050.89
969_F1054_L1.3970.89
101_E104_R1.3970.89
677_R718_Y1.3970.89
399_L436_I1.3960.89
237_F439_I1.3950.89
518_D628_E1.3920.88
149_A155_A1.3910.88
453_F457_N1.3900.88
973_A988_P1.3900.88
500_A510_E1.3820.88
812_Q837_V1.3750.88
872_K877_Q1.3700.88
152_M188_F1.3670.87
322_V338_D1.3650.87
88_P99_A1.3650.87
486_A520_Y1.3650.87
144_A296_I1.3640.87
555_P615_R1.3570.87
866_A870_A1.3550.87
671_R819_E1.3530.87
443_F467_E1.3520.87
705_A710_Y1.3510.87
562_I589_L1.3450.87
813_V830_F1.3420.87
954_K976_G1.3380.86
157_A160_A1.3370.86
424_I452_V1.3340.86
949_V957_V1.3300.86
69_I74_V1.3270.86
638_V659_V1.3250.86
979_I983_E1.3240.86
469_L495_K1.3200.86
768_C773_V1.3100.85
484_L489_L1.3090.85
808_V836_E1.3090.85
70_H73_V1.3000.85
975_H990_L1.2930.84
125_K138_K1.2900.84
523_H628_E1.2890.84
992_N1000_H1.2840.84
756_L833_K1.2830.84
11_L86_V1.2730.83
159_A188_F1.2730.83
561_K595_E1.2690.83
982_G988_P1.2690.83
687_L837_V1.2680.83
343_R539_D1.2650.83
1052_M1055_N1.2630.83
479_V488_F1.2620.83
407_T500_A1.2610.83
816_L828_V1.2600.83
257_T260_E1.2590.83
263_I288_V1.2560.83
6_D114_T1.2550.83
680_H684_R1.2500.82
627_L659_V1.2470.82
508_V513_I1.2420.82
444_R473_E1.2410.82
40_E330_Y1.2400.82
237_F250_V1.2400.82
152_M156_L1.2360.82
508_V512_E1.2360.82
962_A966_K1.2340.81
484_L506_A1.2320.81
679_Q692_N1.2300.81
465_Q468_E1.2280.81
596_T870_A1.2270.81
806_Q810_R1.2200.81
639_I869_M1.2190.81
472_L488_F1.2140.80
146_S207_D1.2040.80
476_V505_L1.2040.80
100_L131_R1.2040.80
452_V466_I1.2020.80
86_V108_L1.1990.80
963_K1051_A1.1990.80
396_Q469_L1.1970.79
447_L455_L1.1930.79
738_F742_V1.1920.79
440_A470_V1.1910.79
461_W465_Q1.1840.79
553_A632_I1.1840.79
221_V322_V1.1840.79
194_R198_L1.1830.79
131_R134_V1.1820.79
406_A437_W1.1810.78
742_V745_S1.1730.78
961_A971_L1.1710.78
421_L425_R1.1630.77
476_V502_L1.1630.77
556_S595_E1.1610.77
592_D872_K1.1590.77
738_F741_A1.1540.77
125_K135_A1.1530.77
395_L466_I1.1530.77
392_Q495_K1.1470.76
778_I806_Q1.1470.76
126_A284_V1.1450.76
453_F460_R1.1450.76
137_K143_T1.1400.76
47_V102_L1.1380.76
71_W107_V1.1370.76
100_L124_D1.1360.76
250_V357_T1.1350.76
587_L612_T1.1320.75
170_P179_G1.1310.75
524_P547_Y1.1300.75
267_A295_L1.1290.75
778_I810_R1.1280.75
71_W75_R1.1280.75
142_E208_E1.1230.75
795_S924_F1.1220.75
475_K488_F1.1220.75
527_K550_E1.1180.75
390_T394_S1.1140.74
625_D628_E1.1130.74
428_L456_T1.1120.74
101_E105_Q1.1120.74
330_Y335_L1.1070.74
972_D989_R1.1070.74
1027_R1031_R1.1040.74
258_D262_Q1.1040.74
868_V877_Q1.1000.73
124_D172_F1.1000.73
341_G539_D1.0960.73
19_V177_S1.0960.73
773_V818_F1.0940.73
812_Q830_F1.0930.73
427_E432_G1.0900.73
565_L626_V1.0900.73
155_A206_I1.0870.72
121_D131_R1.0860.72
13_L69_I1.0860.72
34_C60_M1.0850.72
228_C269_M1.0850.72
188_F206_I1.0770.72
396_Q408_G1.0770.72
208_E296_I1.0750.72
133_D207_D1.0740.71
262_Q265_R1.0730.71
475_K479_V1.0730.71
940_K943_G1.0720.71
384_V398_A1.0700.71
322_V335_L1.0640.71
427_E438_Y1.0640.71
155_A168_I1.0630.71
852_F918_M1.0630.71
218_M228_C1.0610.71
99_A115_M1.0610.71
1014_I1044_L1.0600.70
441_D444_R1.0600.70
13_L74_V1.0570.70
449_V467_E1.0570.70
621_V650_L1.0540.70
586_S613_S1.0510.70
489_L522_L1.0470.70
220_V230_I1.0460.69
628_E631_R1.0450.69
266_N270_A1.0440.69
184_N998_R1.0430.69
126_A724_A1.0430.69
259_K293_G1.0420.69
390_T495_K1.0410.69
192_C206_I1.0400.69
13_L95_A1.0390.69
227_N331_T1.0390.69
627_L657_A1.0360.69
687_L808_V1.0350.69
813_V828_V1.0350.69
250_V391_Q1.0350.69
221_V272_L1.0340.69
724_A742_V1.0340.69
38_R60_M1.0340.69
424_I445_A1.0330.68
867_R877_Q1.0290.68
189_E193_A1.0290.68
207_D210_L1.0270.68
214_K459_D1.0230.68
992_N999_P1.0220.68
718_Y748_A1.0190.67
971_L988_P1.0170.67
816_L839_L1.0160.67
514_R657_A1.0150.67
503_A509_R1.0150.67
406_A412_K1.0140.67
818_F821_Q1.0120.67
735_R739_Q1.0100.67
615_R633_E1.0090.67
389_R548_E1.0090.67
225_N333_D1.0080.67
556_S561_K1.0070.66
503_A513_I1.0060.66
227_N347_S1.0060.66
696_T700_M1.0040.66
228_C273_R1.0020.66
141_L297_V1.0000.66
1017_T1026_S1.0000.66
823_R868_V0.9990.66
228_C272_L0.9980.66
798_A801_L0.9970.66
889_S920_V0.9970.66
998_R1003_D0.9960.66
337_N340_T0.9960.66
586_S596_T0.9950.66
452_V463_L0.9950.66
728_V750_V0.9930.65
996_E1000_H0.9930.65
428_L438_Y0.9920.65
994_V1002_Q0.9890.65
449_V464_V0.9870.65
793_A893_V0.9860.65
464_V467_E0.9810.64
466_I470_V0.9800.64
164_F189_E0.9800.64
442_A447_L0.9800.64
947_L981_L0.9800.64
291_K457_N0.9790.64
8_K43_R0.9790.64
410_D504_K0.9780.64
527_K548_E0.9780.64
279_T326_L0.9750.64
1012_Y1041_D0.9720.64
480_G484_L0.9710.64
85_A88_P0.9700.64
191_I195_G0.9680.63
389_R527_K0.9680.63
168_I192_C0.9670.63
234_I249_T0.9670.63
925_A1052_M0.9650.63
945_A961_A0.9630.63
887_Y920_V0.9610.63
344_T348_F0.9610.63
271_V635_P0.9600.63
253_A352_I0.9590.63
159_A192_C0.9590.63
36_A335_L0.9590.63
472_L491_Q0.9580.63
338_D610_Y0.9580.63
141_L284_V0.9530.62
45_I77_I0.9520.62
856_A889_S0.9520.62
512_E515_K0.9500.62
121_D125_K0.9460.62
486_A522_L0.9450.61
4_R42_Y0.9450.61
472_L475_K0.9450.61
957_V981_L0.9440.61
1_M7_I0.9440.61
945_A1014_I0.9420.61
218_M261_Y0.9410.61
468_E472_L0.9410.61
355_V394_S0.9410.61
954_K977_T0.9400.61
262_Q536_F0.9400.61
107_V110_E0.9380.61
359_I362_F0.9380.61
1005_I1032_S0.9370.61
780_E800_T0.9350.61
784_Q1045_N0.9340.61
701_A738_F0.9340.61
796_L853_V0.9330.60
262_Q535_E0.9320.60
595_E615_R0.9320.60
35_K611_D0.9310.60
524_P628_E0.9280.60
1018_S1024_E0.9280.60
154_E157_A0.9270.60
742_V748_A0.9270.60
421_L447_L0.9270.60
24_C570_N0.9250.60
480_G506_A0.9230.60
268_S286_F0.9190.59
144_A210_L0.9180.59
221_V229_I0.9150.59
642_Y865_A0.9120.59
972_D1004_R0.9100.59
995_H1000_H0.9090.58
993_K1029_I0.9090.58
248_I436_I0.9090.58
682_V686_K0.9080.58
1005_I1036_Y0.9080.58
153_E157_A0.9060.58
1005_I1029_I0.9050.58
744_V750_V0.9030.58
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1019_G1022_A0.5220.27
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80_K1050_T0.5220.27
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516_L522_L0.5160.26
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2_P330_Y0.5140.26
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551_C596_T0.5140.26
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319_I575_G0.5130.26
409_F895_L0.5130.26
339_I541_A0.5120.26
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36_A324_A0.5120.26
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227_N348_F0.5110.26
439_I463_L0.5110.26
297_V729_Y0.5110.26
443_F980_V0.5110.26
5_T967_Q0.5100.26
759_A896_P0.5100.26
234_I363_N0.5090.26
1001_I1028_V0.5090.26
258_D532_C0.5090.26
1004_R1010_Y0.5090.26
224_K687_L0.5090.26
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940_K1012_Y0.5080.26
432_G920_V0.5080.26
630_V635_P0.5080.26
575_G620_P0.5080.26
143_T931_A0.5080.26
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444_R470_V0.5070.26
530_D536_F0.5070.26
166_C207_D0.5070.26
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556_S559_R0.5060.26
227_N337_N0.5060.26
474_E500_A0.5060.26
490_R707_E0.5060.26
1006_K1010_Y0.5060.26
17_P49_S0.5060.26
767_I777_G0.5060.26
538_T889_S0.5060.26
67_E108_L0.5050.25
254_Q437_W0.5050.25
258_D348_F0.5050.25
168_I971_L0.5050.25
82_R160_A0.5050.25
265_R344_T0.5050.25
140_G143_T0.5050.25
166_C601_C0.5050.25
380_S776_G0.5050.25
4_R328_V0.5050.25
840_I1046_G0.5050.25
588_A591_E0.5040.25
31_A551_C0.5040.25
377_Q931_A0.5040.25
171_S179_G0.5040.25
757_D833_K0.5040.25
221_V230_I0.5040.25
411_P414_S0.5040.25
395_L476_V0.5030.25
24_C601_C0.5030.25
684_R771_E0.5020.25
666_P853_V0.5020.25
384_V402_L0.5020.25
672_A720_L0.5020.25
315_T785_A0.5020.25
738_F980_V0.5010.25
588_A674_D0.5010.25
564_V727_I0.5010.25
963_K1050_T0.5010.25
110_E478_E0.5010.25
595_E614_D0.5010.25
1015_N1019_G0.5010.25
840_I1020_R0.5010.25
256_L459_D0.5010.25
19_V893_V0.5000.25
35_K213_W0.5000.25
82_R807_D0.5000.25
570_N692_N0.5000.25
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3jrxA 1 0.3952 100 0.896 Contact Map
3glkA 1 0.3672 100 0.897 Contact Map
3orqA 2 0.3364 100 0.9 Contact Map
2vpqA 2 0.3868 100 0.901 Contact Map
1ulzA 2 0.3914 100 0.902 Contact Map
3q2oA 2 0.3383 100 0.903 Contact Map
1w96A 1 0.3877 100 0.905 Contact Map
2dzdA 2 0.3868 100 0.905 Contact Map
2dwcA 4 0.3476 100 0.909 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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