MANA - ECOLI - GREMLIN Contacts

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MANA - Mannose-6-phosphate isomerase

UniProt:	P00946	Sequences: MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKSSSRVQNAAGDIVSLRDVIESDKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNKHNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQPVAGAHPAIAHFLQQPDAERLSELFASLLNMQGEEKSRALAILKSALDSQQGEPWQTIRLISEFYPEDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETTISQQSAAILFCVEGDATLWKGSQQLQLKPGESAFIAANESPVTVKGHGRLARVYNKL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10566
Length:	391 (365)
Sequences:	1470 (1029)
Seq/√Len:	53.9

ECOLI - MANA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
136_V	262_A	5.355	1.00
65_D	68_T	4.926	1.00
140_T	243_P	4.218	1.00
141_P	242_N	4.128	1.00
102_K	130_N	3.935	1.00
102_K	106_E	3.864	1.00
48_V	61_V	3.345	1.00
93_P	223_F	3.286	1.00
273_L	290_N	3.243	1.00
12_A	279_P	3.219	1.00
107_I	111_K	3.009	1.00
112_E	124_R	3.001	1.00
359_L	367_A	2.962	1.00
3_K	365_E	2.907	1.00
20_T	33_M	2.825	1.00
245_E	302_L	2.807	1.00
38_M	342_I	2.793	1.00
6_N	366_S	2.773	1.00
98_V	290_N	2.739	1.00
137_F	323_F	2.666	1.00
38_M	366_S	2.639	1.00
6_N	38_M	2.539	1.00
17_T	20_T	2.500	1.00
126_Y	286_E	2.472	1.00
163_G	205_A	2.463	1.00
143_L	240_K	2.398	1.00
85_F	265_V	2.389	1.00
216_T	238_V	2.374	1.00
87_V	263_L	2.350	1.00
184_F	232_S	2.339	1.00
131_H	267_A	2.238	1.00
103_H	106_E	2.223	1.00
12_A	92_Q	2.209	1.00
143_L	238_V	2.200	1.00
242_N	245_E	2.189	1.00
311_E	324_S	2.154	1.00
143_L	219_L	2.150	1.00
57_S	60_D	2.129	1.00
85_F	323_F	2.126	1.00
248_F	318_V	2.110	1.00
98_V	291_V	2.108	1.00
112_E	125_N	2.100	1.00
25_M	33_M	2.076	1.00
61_V	69_L	2.034	1.00
131_H	320_D	2.025	1.00
77_R	319_D	2.023	1.00
145_M	258_L	1.982	1.00
163_G	201_I	1.954	1.00
85_F	263_L	1.923	1.00
311_E	326_H	1.917	1.00
112_E	281_Y	1.896	0.99
361_L	367_A	1.882	0.99
72_E	76_K	1.880	0.99
7_S	44_S	1.877	0.99
20_T	23_Y	1.826	0.99
104_N	290_N	1.810	0.99
62_I	65_D	1.803	0.99
17_T	21_E	1.788	0.99
98_V	275_A	1.782	0.99
265_V	323_F	1.757	0.99
112_E	127_K	1.731	0.99
95_S	274_R	1.725	0.99
9_Q	44_S	1.699	0.99
6_N	46_S	1.698	0.99
216_T	220_I	1.644	0.99
23_Y	363_P	1.638	0.98
11_Y	34_A	1.632	0.98
98_V	273_L	1.615	0.98
75_A	79_G	1.604	0.98
149_R	157_L	1.593	0.98
184_F	188_L	1.587	0.98
66_K	71_G	1.576	0.98
345_C	348_G	1.566	0.98
368_F	371_A	1.562	0.98
273_L	286_E	1.552	0.98
69_L	370_A	1.539	0.98
69_L	368_F	1.535	0.98
199_L	230_L	1.535	0.98
102_K	131_H	1.534	0.98
141_P	240_K	1.532	0.98
19_L	262_A	1.524	0.98
80_E	129_P	1.523	0.98
349_D	360_Q	1.519	0.97
48_V	51_A	1.517	0.97
254_P	275_A	1.511	0.97
274_R	280_K	1.501	0.97
56_V	64_S	1.497	0.97
18_A	261_V	1.480	0.97
92_Q	223_F	1.434	0.96
286_E	289_A	1.404	0.96
89_C	261_V	1.399	0.96
250_F	253_T	1.391	0.96
224_Y	230_L	1.387	0.96
20_T	25_M	1.381	0.96
354_K	373_E	1.371	0.95
87_V	261_V	1.367	0.95
10_N	31_Q	1.364	0.95
95_S	280_K	1.364	0.95
23_Y	33_M	1.359	0.95
110_A	129_P	1.354	0.95
347_E	383_R	1.352	0.95
101_N	104_N	1.352	0.95
127_K	272_V	1.347	0.95
17_T	22_L	1.337	0.95
73_A	338_Q	1.331	0.95
136_V	247_M	1.324	0.94
350_A	367_A	1.323	0.94
106_E	110_A	1.314	0.94
274_R	278_T	1.306	0.94
62_I	70_L	1.302	0.94
145_M	238_V	1.301	0.94
108_G	124_R	1.296	0.94
124_R	281_Y	1.279	0.93
16_K	30_S	1.265	0.93
38_M	85_F	1.262	0.93
220_I	224_Y	1.257	0.93
253_T	292_K	1.256	0.93
351_T	358_Q	1.254	0.93
123_E	281_Y	1.239	0.92
9_Q	43_K	1.237	0.92
352_L	367_A	1.237	0.92
219_L	238_V	1.236	0.92
92_Q	224_Y	1.215	0.91
369_I	376_V	1.210	0.91
108_G	112_E	1.209	0.91
51_A	56_V	1.198	0.91
95_S	278_T	1.187	0.90
341_A	376_V	1.185	0.90
2_Q	48_V	1.174	0.90
103_H	107_I	1.170	0.90
181_S	185_A	1.155	0.89
125_N	273_L	1.149	0.89
131_H	266_M	1.136	0.88
146_N	247_M	1.122	0.88
124_R	127_K	1.122	0.88
68_T	372_N	1.118	0.88
4_L	342_I	1.115	0.87
96_I	254_P	1.114	0.87
19_L	89_C	1.112	0.87
131_H	318_V	1.110	0.87
351_T	379_K	1.108	0.87
144_A	247_M	1.108	0.87
261_V	265_V	1.099	0.87
148_F	236_L	1.099	0.87
353_W	358_Q	1.079	0.86
353_W	356_S	1.072	0.85
125_N	286_E	1.068	0.85
36_L	87_V	1.068	0.85
195_K	228_S	1.066	0.85
149_R	236_L	1.064	0.85
340_A	368_F	1.045	0.84
313_D	324_S	1.039	0.83
353_W	377_T	1.031	0.83
20_T	29_S	1.027	0.83
249_L	287_L	1.013	0.82
19_L	136_V	1.009	0.82
130_N	267_A	1.003	0.81
149_R	154_I	1.002	0.81
43_K	270_D	1.002	0.81
16_K	91_A	0.997	0.81
56_V	350_A	0.996	0.81
353_W	379_K	0.985	0.80
202_L	205_A	0.980	0.80
347_E	363_P	0.979	0.80
104_N	108_G	0.979	0.80
74_V	78_F	0.975	0.79
316_I	320_D	0.974	0.79
217_I	234_L	0.973	0.79
101_N	252_E	0.972	0.79
62_I	69_L	0.968	0.79
266_M	272_V	0.966	0.79
126_Y	229_G	0.964	0.78
40_A	80_E	0.963	0.78
249_L	253_T	0.955	0.78
155_V	172_L	0.953	0.78
361_L	365_E	0.946	0.77
349_D	362_K	0.942	0.77
91_A	259_Q	0.939	0.77
188_L	232_S	0.939	0.77
207_D	222_E	0.935	0.76
174_Q	179_R	0.934	0.76
60_D	64_S	0.933	0.76
90_A	258_L	0.933	0.76
36_L	83_F	0.921	0.75
265_V	279_P	0.916	0.75
95_S	287_L	0.912	0.75
183_L	233_P	0.910	0.74
107_I	289_A	0.909	0.74
354_K	357_Q	0.906	0.74
300_Q	303_T	0.906	0.74
202_L	231_F	0.904	0.74
206_L	214_W	0.904	0.74
185_A	189_N	0.903	0.74
137_F	325_L	0.903	0.74
6_N	33_M	0.901	0.74
98_V	253_T	0.901	0.74
248_F	317_P	0.901	0.74
104_N	252_E	0.900	0.74
46_S	246_A	0.900	0.74
236_L	287_L	0.900	0.74
175_P	178_E	0.897	0.73
66_K	70_L	0.896	0.73
126_Y	280_K	0.894	0.73
296_K	299_N	0.894	0.73
183_L	186_S	0.893	0.73
232_S	235_L	0.892	0.73
102_K	129_P	0.890	0.73
241_L	245_E	0.890	0.73
216_T	219_L	0.888	0.73
125_N	281_Y	0.885	0.72
93_P	345_C	0.883	0.72
198_A	202_L	0.880	0.72
274_R	287_L	0.878	0.72
351_T	360_Q	0.878	0.72
2_Q	50_N	0.877	0.72
247_M	382_G	0.869	0.71
144_A	239_V	0.867	0.71
212_E	240_K	0.864	0.70
80_E	101_N	0.864	0.70
290_N	293_F	0.861	0.70
146_N	236_L	0.858	0.70
184_F	236_L	0.858	0.70
178_E	181_S	0.857	0.70
90_A	262_A	0.852	0.69
141_P	243_P	0.851	0.69
87_V	161_V	0.849	0.69
25_M	29_S	0.846	0.69
133_P	267_A	0.843	0.69
16_K	20_T	0.840	0.68
38_M	87_V	0.839	0.68
101_N	232_S	0.837	0.68
47_R	57_S	0.836	0.68
198_A	231_F	0.835	0.68
166_P	201_I	0.834	0.68
96_I	230_L	0.833	0.68
130_N	318_V	0.833	0.68
135_L	265_V	0.832	0.68
73_A	110_A	0.832	0.68
326_H	378_V	0.831	0.67
20_T	30_S	0.829	0.67
89_C	262_A	0.828	0.67
43_K	263_L	0.828	0.67
151_F	155_V	0.818	0.66
109_F	123_E	0.815	0.66
109_F	350_A	0.814	0.66
135_L	268_N	0.814	0.66
103_H	110_A	0.814	0.66
135_L	301_L	0.813	0.66
146_N	249_L	0.808	0.65
189_N	285_P	0.808	0.65
90_A	261_V	0.805	0.65
9_Q	34_A	0.805	0.65
108_G	123_E	0.803	0.65
253_T	293_F	0.800	0.64
203_K	221_S	0.800	0.64
230_L	277_L	0.799	0.64
243_P	371_A	0.799	0.64
153_E	156_S	0.797	0.64
126_Y	287_L	0.796	0.64
21_E	363_P	0.796	0.64
83_F	319_D	0.793	0.64
373_E	376_V	0.790	0.63
108_G	281_Y	0.789	0.63
125_N	283_D	0.788	0.63
60_D	63_E	0.787	0.63
185_A	285_P	0.785	0.63
83_F	91_A	0.782	0.63
193_E	197_R	0.781	0.63
23_Y	291_V	0.776	0.62
149_R	153_E	0.776	0.62
314_F	325_L	0.775	0.62
58_L	71_G	0.771	0.62
352_L	358_Q	0.770	0.61
154_I	233_P	0.768	0.61
58_L	62_I	0.765	0.61
28_P	33_M	0.763	0.61
135_L	316_I	0.763	0.61
19_L	23_Y	0.762	0.61
127_K	281_Y	0.762	0.61
102_K	320_D	0.760	0.60
192_G	196_S	0.759	0.60
96_I	232_S	0.757	0.60
74_V	339_S	0.756	0.60
252_E	286_E	0.753	0.60
12_A	31_Q	0.752	0.60
220_I	233_P	0.751	0.60
135_L	320_D	0.748	0.59
312_L	325_L	0.744	0.59
220_I	223_F	0.743	0.59
197_R	367_A	0.742	0.59
126_Y	279_P	0.741	0.59
280_K	287_L	0.741	0.59
214_W	234_L	0.739	0.58
200_A	360_Q	0.735	0.58
190_M	195_K	0.734	0.58
158_L	161_V	0.728	0.57
104_N	107_I	0.724	0.57
275_A	293_F	0.721	0.56
8_V	38_M	0.720	0.56
5_I	47_R	0.719	0.56
7_S	26_E	0.713	0.56
135_L	246_A	0.713	0.56
18_A	89_C	0.711	0.55
199_L	206_L	0.710	0.55
230_L	282_I	0.709	0.55
254_P	318_V	0.704	0.55
148_F	293_F	0.703	0.55
251_A	279_P	0.701	0.54
127_K	266_M	0.700	0.54
220_I	230_L	0.700	0.54
350_A	382_G	0.699	0.54
48_V	56_V	0.698	0.54
143_L	259_Q	0.697	0.54
184_F	288_V	0.697	0.54
96_I	220_I	0.697	0.54
15_S	20_T	0.696	0.54
197_R	377_T	0.696	0.54
336_S	374_S	0.695	0.54
52_A	56_V	0.690	0.53
370_A	373_E	0.688	0.53
292_K	320_D	0.686	0.53
362_K	365_E	0.684	0.53
151_F	179_R	0.684	0.53
64_S	159_Q	0.683	0.52
178_E	327_D	0.679	0.52
91_A	150_E	0.678	0.52
33_M	89_C	0.673	0.51
340_A	346_V	0.672	0.51
239_V	298_A	0.671	0.51
180_L	293_F	0.669	0.51
196_S	226_E	0.668	0.51
189_N	248_F	0.665	0.51
136_V	196_S	0.664	0.50
109_F	112_E	0.662	0.50
59_R	80_E	0.660	0.50
51_A	72_E	0.659	0.50
63_E	110_A	0.658	0.50
349_D	380_G	0.658	0.50
41_H	132_K	0.658	0.50
236_L	249_L	0.656	0.50
216_T	258_L	0.655	0.49
94_L	97_Q	0.653	0.49
236_L	254_P	0.653	0.49
204_S	207_D	0.652	0.49
2_Q	368_F	0.651	0.49
215_Q	218_R	0.651	0.49
263_L	344_F	0.650	0.49
87_V	344_F	0.649	0.49
252_E	290_N	0.648	0.49
78_F	83_F	0.647	0.49
314_F	320_D	0.647	0.49
154_I	157_L	0.647	0.49
267_A	320_D	0.644	0.48
19_L	252_E	0.644	0.48
144_A	258_L	0.644	0.48
219_L	259_Q	0.643	0.48
337_Q	341_A	0.643	0.48
294_E	319_D	0.642	0.48
96_I	287_L	0.642	0.48
343_L	369_I	0.641	0.48
4_L	21_E	0.640	0.48
128_D	255_H	0.640	0.48
218_R	221_S	0.638	0.48
127_K	283_D	0.637	0.48
176_D	295_A	0.637	0.48
193_E	201_I	0.636	0.47
137_F	266_M	0.635	0.47
59_R	63_E	0.632	0.47
62_I	248_F	0.632	0.47
356_S	379_K	0.631	0.47
278_T	287_L	0.631	0.47
182_E	207_D	0.630	0.47
38_M	46_S	0.630	0.47
181_S	188_L	0.629	0.47
280_K	283_D	0.628	0.47
6_N	137_F	0.623	0.46
64_S	72_E	0.623	0.46
130_N	317_P	0.622	0.46
93_P	224_Y	0.621	0.46
220_I	240_K	0.621	0.46
107_I	330_D	0.620	0.46
195_K	198_A	0.618	0.46
96_I	274_R	0.617	0.45
129_P	144_A	0.614	0.45
154_I	183_L	0.614	0.45
15_S	18_A	0.614	0.45
52_A	72_E	0.614	0.45
80_E	130_N	0.610	0.45
334_T	365_E	0.609	0.45
330_D	376_V	0.609	0.45
18_A	23_Y	0.608	0.44
43_K	46_S	0.607	0.44
108_G	261_V	0.605	0.44
242_N	258_L	0.604	0.44
11_Y	14_G	0.604	0.44
70_L	340_A	0.602	0.44
74_V	77_R	0.601	0.44
32_P	249_L	0.601	0.44
154_I	295_A	0.600	0.44
63_E	203_K	0.600	0.44
23_Y	137_F	0.600	0.44
12_A	135_L	0.598	0.43
29_S	377_T	0.598	0.43
16_K	26_E	0.597	0.43
34_A	37_W	0.597	0.43
197_R	201_I	0.597	0.43
29_S	33_M	0.595	0.43
131_H	237_N	0.595	0.43
20_T	291_V	0.595	0.43
193_E	200_A	0.594	0.43
144_A	249_L	0.592	0.43
330_D	378_V	0.592	0.43
190_M	239_V	0.592	0.43
131_H	317_P	0.591	0.43
46_S	85_F	0.590	0.43
215_Q	219_L	0.590	0.43
268_N	339_S	0.589	0.42
148_F	158_L	0.584	0.42
265_V	268_N	0.584	0.42
38_M	266_M	0.584	0.42
262_A	265_V	0.583	0.42
224_Y	256_A	0.582	0.42
144_A	272_V	0.582	0.42
246_A	291_V	0.582	0.42
152_S	156_S	0.578	0.41
191_Q	198_A	0.577	0.41
107_I	285_P	0.577	0.41
31_Q	263_L	0.577	0.41
109_F	124_R	0.577	0.41
15_S	29_S	0.576	0.41
349_D	381_H	0.576	0.41
78_F	139_L	0.576	0.41
144_A	262_A	0.575	0.41
226_E	336_S	0.575	0.41
186_S	203_K	0.575	0.41
108_G	286_E	0.574	0.41
326_H	379_K	0.574	0.41
352_L	378_V	0.572	0.41
152_S	362_K	0.572	0.41
144_A	224_Y	0.570	0.41
19_L	261_V	0.568	0.40
11_Y	265_V	0.567	0.40
3_K	49_Q	0.564	0.40
60_D	76_K	0.563	0.40
196_S	200_A	0.563	0.40
207_D	221_S	0.563	0.40
91_A	261_V	0.562	0.40
199_L	247_M	0.562	0.40
60_D	347_E	0.561	0.40
277_L	318_V	0.560	0.40
7_S	46_S	0.559	0.39
63_E	76_K	0.557	0.39
304_Q	315_P	0.557	0.39
51_A	258_L	0.557	0.39
186_S	191_Q	0.557	0.39
7_S	47_R	0.557	0.39
182_E	185_A	0.557	0.39
239_V	247_M	0.556	0.39
219_L	223_F	0.555	0.39
139_L	346_V	0.553	0.39
252_E	292_K	0.552	0.39
137_F	265_V	0.550	0.38
247_M	275_A	0.549	0.38
101_N	220_I	0.549	0.38
127_K	256_A	0.548	0.38
208_S	359_L	0.547	0.38
44_S	59_R	0.546	0.38
158_L	293_F	0.545	0.38
275_A	341_A	0.544	0.38
48_V	57_S	0.544	0.38
296_K	300_Q	0.543	0.38
52_A	245_E	0.543	0.38
268_N	320_D	0.543	0.38
137_F	246_A	0.543	0.38
209_Q	294_E	0.542	0.38
14_G	35_E	0.542	0.38
164_A	167_A	0.541	0.38
197_R	342_I	0.541	0.38
229_G	339_S	0.541	0.38
267_A	318_V	0.540	0.37
78_F	317_P	0.540	0.37
148_F	248_F	0.540	0.37
184_F	314_F	0.538	0.37
16_K	191_Q	0.538	0.37
160_P	164_A	0.538	0.37
200_A	204_S	0.537	0.37
159_Q	172_L	0.537	0.37
361_L	374_S	0.536	0.37
88_L	276_G	0.536	0.37
176_D	179_R	0.535	0.37
32_P	280_K	0.534	0.37
343_L	352_L	0.534	0.37
130_N	320_D	0.533	0.37
50_N	57_S	0.533	0.37
283_D	287_L	0.533	0.37
153_E	240_K	0.532	0.37
79_G	371_A	0.532	0.37
330_D	377_T	0.532	0.37
203_K	217_I	0.531	0.37
13_W	34_A	0.530	0.36
135_L	274_R	0.528	0.36
175_P	179_R	0.528	0.36
274_R	277_L	0.528	0.36
90_A	275_A	0.528	0.36
108_G	136_V	0.527	0.36
209_Q	214_W	0.527	0.36
108_G	265_V	0.526	0.36
126_Y	283_D	0.526	0.36
229_G	267_A	0.526	0.36
184_F	339_S	0.526	0.36
93_P	106_E	0.524	0.36
140_T	317_P	0.523	0.36
98_V	104_N	0.523	0.36
325_L	328_L	0.522	0.36
22_L	87_V	0.522	0.36
177_A	204_S	0.521	0.36
324_S	341_A	0.521	0.36
275_A	299_N	0.518	0.35
233_P	268_N	0.518	0.35
213_P	216_T	0.516	0.35
278_T	283_D	0.516	0.35
294_E	325_L	0.514	0.35
4_L	263_L	0.513	0.35
98_V	216_T	0.513	0.35
88_L	238_V	0.513	0.35
317_P	320_D	0.512	0.35
307_K	327_D	0.512	0.35
8_V	33_M	0.512	0.35
250_F	254_P	0.512	0.35
235_L	367_A	0.512	0.35
87_V	329_S	0.511	0.35
3_K	359_L	0.510	0.35
43_K	344_F	0.509	0.34
356_S	377_T	0.509	0.34
338_Q	378_V	0.508	0.34
216_T	224_Y	0.507	0.34
183_L	340_A	0.505	0.34
137_F	263_L	0.503	0.34
265_V	342_I	0.503	0.34
274_R	283_D	0.502	0.34
95_S	283_D	0.501	0.34
39_G	133_P	0.501	0.34
71_G	84_L	0.501	0.34
62_I	243_P	0.501	0.34
124_R	268_N	0.501	0.34
151_F	171_F	0.500	0.34
111_K	199_L	0.500	0.34
111_K	125_N	0.500	0.34

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2wfpA	1	0.9872	100	0.2	Contact Map
1pmiA	1	0.9668	100	0.242	Contact Map
1zx5A	1	0.7417	100	0.486	Contact Map
1qwrA	1	0.7647	100	0.522	Contact Map
3rnsA	1	0.5013	98.7	0.923	Contact Map
3myxA	1	0.5473	98	0.936	Contact Map
1sq4A	5	0.6061	98	0.937	Contact Map
3h7jA	1	0.5294	97.9	0.938	Contact Map
3es4A	2	0.2788	97.8	0.939	Contact Map
1y3tA	2	0.5729	97.7	0.941	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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