PHR - ECOLI - GREMLIN Contacts

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PHR - Deoxyribodipyrimidine photo-lyase

UniProt:	P00914	Sequences: MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARKGK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10736
Length:	472 (415)
Sequences:	5591 (4292)
Seq/√Len:	210.7

ECOLI - PHR
HALSA - PHR Q9HP89
SULSO - Q97VY1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
310_N	313_H	4.071	1.00
241_S	246_G	3.928	1.00
326_I	347_I	3.716	1.00
315_Q	319_E	3.631	1.00
335_N	366_Y	3.416	1.00
314_L	318_Q	3.335	1.00
314_L	362_E	3.271	1.00
297_P	303_D	3.217	1.00
332_R	422_E	2.993	1.00
212_L	252_C	2.923	1.00
63_Q	67_A	2.910	1.00
101_F	129_F	2.751	1.00
330_A	344_L	2.667	1.00
406_G	416_I	2.622	1.00
58_Q	246_G	2.618	1.00
99_H	127_E	2.547	1.00
102_Y	126_C	2.519	1.00
102_Y	128_G	2.434	1.00
271_V	274_N	2.429	1.00
63_Q	72_P	2.391	1.00
87_I	90_Q	2.380	1.00
15_H	251_Q	2.376	1.00
335_N	370_Q	2.373	1.00
324_Y	351_F	2.341	1.00
205_E	209_I	2.316	1.00
166_M	169_C	2.299	1.00
61_G	206_K	2.289	1.00
205_E	251_Q	2.264	1.00
213_R	255_R	2.216	1.00
333_Q	337_T	2.181	1.00
17_N	103_N	2.169	1.00
308_Q	313_H	2.151	1.00
100_L	121_L	2.144	1.00
209_I	251_Q	2.141	1.00
344_L	415_F	2.141	1.00
282_Y	382_G	2.129	1.00
8_F	33_A	2.109	1.00
404_T	408_K	2.086	1.00
78_V	87_I	2.068	1.00
6_V	19_A	2.037	1.00
336_S	419_W	2.011	1.00
6_V	17_N	1.986	1.00
55_I	244_T	1.948	1.00
323_G	328_D	1.947	1.00
99_H	125_V	1.937	1.00
337_T	419_W	1.930	1.00
207_A	210_A	1.909	1.00
366_Y	370_Q	1.903	1.00
255_R	258_A	1.884	1.00
212_L	255_R	1.879	1.00
58_Q	204_E	1.877	1.00
90_Q	94_E	1.837	1.00
76_R	87_I	1.837	1.00
178_S	181_I	1.814	1.00
364_E	380_N	1.808	1.00
34_L	91_V	1.775	1.00
315_Q	318_Q	1.757	1.00
401_N	405_Q	1.738	1.00
65_A	205_E	1.719	1.00
54_L	244_T	1.717	1.00
332_R	420_L	1.700	1.00
54_L	241_S	1.698	1.00
155_K	274_N	1.693	1.00
403_T	406_G	1.652	1.00
216_C	220_A	1.643	1.00
8_F	66_L	1.642	1.00
92_C	97_V	1.641	1.00
4_H	27_S	1.629	1.00
169_C	172_A	1.622	1.00
242_L	252_C	1.612	1.00
282_Y	381_G	1.609	1.00
230_P	344_L	1.609	1.00
222_E	226_Q	1.607	1.00
208_A	247_L	1.596	1.00
155_K	277_I	1.594	1.00
349_A	386_A	1.588	1.00
85_V	116_E	1.584	1.00
76_R	94_E	1.582	1.00
165_G	169_C	1.571	1.00
318_Q	369_S	1.569	1.00
167_P	170_V	1.564	1.00
333_Q	415_F	1.561	1.00
352_L	358_I	1.556	1.00
325_P	329_A	1.547	1.00
79_D	85_V	1.530	1.00
33_A	71_I	1.520	1.00
251_Q	255_R	1.508	1.00
61_G	65_A	1.505	1.00
111_R	115_V	1.502	1.00
154_F	284_H	1.491	1.00
18_L	131_D	1.477	1.00
291_S	296_R	1.461	1.00
139_A	161_R	1.456	1.00
368_M	374_G	1.450	1.00
309_S	362_E	1.441	1.00
362_E	365_R	1.433	1.00
256_L	269_G	1.423	1.00
324_Y	355_D	1.422	1.00
21_A	25_R	1.418	1.00
155_K	159_L	1.415	1.00
316_A	321_K	1.413	1.00
32_L	74_L	1.413	1.00
67_A	72_P	1.410	1.00
15_H	209_I	1.409	1.00
34_L	88_V	1.409	1.00
79_D	86_E	1.406	1.00
107_E	110_E	1.397	1.00
22_A	25_R	1.389	1.00
38_T	41_Q	1.388	1.00
253_L	273_L	1.387	1.00
135_L	158_W	1.383	1.00
150_V	393_A	1.376	1.00
292_L	380_N	1.374	1.00
151_F	274_N	1.374	1.00
296_R	303_D	1.368	1.00
236_S	272_W	1.362	1.00
85_V	89_K	1.362	1.00
238_L	272_W	1.358	1.00
10_Q	105_Q	1.353	1.00
352_L	363_G	1.353	1.00
65_A	206_K	1.344	1.00
285_L	391_T	1.342	1.00
53_E	57_A	1.334	1.00
224_E	271_V	1.331	1.00
86_E	90_Q	1.330	1.00
57_A	203_V	1.326	1.00
5_L	97_V	1.314	1.00
91_V	95_N	1.304	1.00
275_E	378_A	1.299	1.00
229_F	232_V	1.293	1.00
214_Q	218_N	1.284	1.00
111_R	287_T	1.281	1.00
222_E	225_Q	1.276	1.00
204_E	207_A	1.273	1.00
413_G	417_R	1.269	1.00
8_F	62_L	1.266	1.00
326_I	406_G	1.262	1.00
118_E	128_G	1.262	1.00
226_Q	234_G	1.259	1.00
66_L	71_I	1.256	1.00
271_V	275_E	1.253	1.00
188_T	191_Y	1.249	1.00
178_S	184_S	1.236	1.00
92_C	95_N	1.231	1.00
132_S	283_R	1.229	1.00
255_R	259_E	1.223	1.00
107_E	376_L	1.222	1.00
89_K	120_A	1.217	1.00
4_H	26_N	1.217	1.00
314_L	358_I	1.216	1.00
4_H	101_F	1.216	1.00
37_A	42_W	1.214	1.00
258_A	262_Q	1.213	1.00
414_E	417_R	1.213	1.00
334_L	371_L	1.202	1.00
170_V	173_P	1.199	1.00
330_A	415_F	1.197	1.00
9_R	114_D	1.196	1.00
250_R	254_H	1.195	1.00
26_N	29_A	1.191	1.00
92_C	124_V	1.183	1.00
92_C	100_L	1.180	1.00
40_R	79_D	1.179	1.00
376_L	380_N	1.177	1.00
256_L	273_L	1.172	1.00
238_L	252_C	1.169	1.00
105_Q	110_E	1.154	1.00
363_G	383_W	1.151	1.00
256_L	272_W	1.149	1.00
181_I	184_S	1.149	1.00
179_G	184_S	1.147	1.00
167_P	175_V	1.146	1.00
404_T	407_E	1.139	1.00
204_E	208_A	1.129	1.00
36_I	88_V	1.128	1.00
158_W	277_I	1.127	1.00
227_R	275_E	1.126	1.00
312_A	362_E	1.126	1.00
226_Q	232_V	1.126	1.00
333_Q	339_W	1.125	1.00
318_Q	366_Y	1.121	1.00
204_E	246_G	1.115	1.00
26_N	99_H	1.114	1.00
34_L	76_R	1.112	1.00
39_P	77_E	1.109	1.00
74_L	91_V	1.108	1.00
286_I	377_A	1.108	1.00
65_A	69_K	1.099	1.00
253_L	277_I	1.097	1.00
108_V	112_A	1.096	1.00
4_H	29_A	1.095	1.00
54_L	240_A	1.094	1.00
165_G	170_V	1.091	1.00
237_R	339_W	1.088	1.00
89_K	93_A	1.087	1.00
35_Y	59_L	1.084	1.00
35_Y	55_I	1.080	1.00
64_I	68_E	1.074	1.00
327_V	331_M	1.072	1.00
323_G	414_E	1.070	1.00
257_L	273_L	1.067	1.00
311_P	362_E	1.067	1.00
36_I	84_S	1.066	1.00
56_N	60_N	1.044	1.00
222_E	268_A	1.042	1.00
14_L	69_K	1.041	1.00
182_E	185_P	1.039	1.00
115_V	119_R	1.037	1.00
7_W	117_V	1.034	1.00
312_A	316_A	1.032	1.00
157_A	160_K	1.031	1.00
112_A	116_E	1.024	1.00
32_L	95_N	1.021	1.00
216_C	256_L	1.021	1.00
151_F	154_F	1.017	1.00
382_G	386_A	1.017	1.00
32_L	97_V	1.014	1.00
327_V	347_I	1.010	1.00
100_L	126_C	0.995	1.00
314_L	352_L	0.989	1.00
134_I	158_W	0.986	1.00
92_C	121_L	0.986	1.00
214_Q	219_G	0.981	1.00
202_P	207_A	0.979	1.00
172_A	175_V	0.978	1.00
112_A	115_V	0.976	1.00
221_G	259_E	0.970	1.00
47_M	51_Q	0.969	1.00
61_G	203_V	0.968	1.00
121_L	124_V	0.962	1.00
36_I	87_I	0.961	1.00
359_D	362_E	0.961	1.00
15_H	205_E	0.960	1.00
133_V	283_R	0.959	1.00
104_Y	137_P	0.956	1.00
50_R	370_Q	0.951	1.00
203_V	207_A	0.947	0.99
159_L	270_S	0.945	0.99
267_G	270_S	0.944	0.99
233_E	237_R	0.937	0.99
143_G	157_A	0.937	0.99
277_I	280_E	0.935	0.99
60_N	64_I	0.926	0.99
213_R	217_Q	0.924	0.99
235_T	339_W	0.924	0.99
141_M	288_Y	0.920	0.99
102_Y	118_E	0.920	0.99
309_S	313_H	0.917	0.99
332_R	336_S	0.916	0.99
406_G	413_G	0.911	0.99
89_K	92_C	0.908	0.99
76_R	90_Q	0.907	0.99
317_W	331_M	0.905	0.99
275_E	346_M	0.904	0.99
5_L	92_C	0.903	0.99
401_N	404_T	0.899	0.99
22_A	26_N	0.897	0.99
416_I	420_L	0.895	0.99
398_R	405_Q	0.887	0.99
216_C	259_E	0.887	0.99
22_A	129_F	0.884	0.99
104_Y	128_G	0.879	0.99
33_A	66_L	0.878	0.99
54_L	246_G	0.872	0.99
172_A	176_R	0.870	0.99
207_A	211_Q	0.870	0.99
27_S	30_R	0.869	0.99
39_P	43_A	0.869	0.99
37_A	59_L	0.869	0.99
398_R	401_N	0.866	0.99
216_C	255_R	0.863	0.99
84_S	89_K	0.863	0.99
103_N	131_D	0.862	0.99
26_N	101_F	0.860	0.99
252_C	272_W	0.858	0.99
170_V	175_V	0.858	0.99
210_A	214_Q	0.855	0.99
403_T	407_E	0.853	0.99
300_A	303_D	0.853	0.99
318_Q	362_E	0.852	0.99
146_E	149_K	0.851	0.99
18_L	22_A	0.848	0.99
88_V	92_C	0.846	0.99
166_M	172_A	0.841	0.99
130_D	136_P	0.839	0.99
74_L	95_N	0.839	0.99
37_A	75_F	0.838	0.99
349_A	367_F	0.837	0.99
282_Y	391_T	0.833	0.99
105_Q	113_R	0.833	0.99
78_V	86_E	0.828	0.99
66_L	73_L	0.827	0.99
283_R	378_A	0.826	0.99
100_L	117_V	0.824	0.99
39_P	42_W	0.823	0.99
297_P	389_T	0.823	0.99
24_C	172_A	0.823	0.99
54_L	203_V	0.819	0.99
54_L	204_E	0.819	0.99
320_G	331_M	0.817	0.98
358_I	362_E	0.816	0.98
328_D	332_R	0.815	0.98
343_R	405_Q	0.815	0.98
50_R	201_F	0.815	0.98
74_L	94_E	0.813	0.98
101_F	127_E	0.812	0.98
166_M	171_A	0.811	0.98
4_H	30_R	0.802	0.98
14_L	66_L	0.802	0.98
149_K	289_H	0.799	0.98
65_A	68_E	0.796	0.98
182_E	186_S	0.795	0.98
159_L	277_I	0.792	0.98
324_Y	403_T	0.790	0.98
54_L	58_Q	0.790	0.98
321_K	420_L	0.790	0.98
201_F	237_R	0.789	0.98
115_V	118_E	0.788	0.98
110_E	113_R	0.786	0.98
136_P	139_A	0.785	0.98
47_M	52_A	0.784	0.98
135_L	277_I	0.784	0.98
212_L	247_L	0.781	0.98
106_Y	133_V	0.780	0.98
134_I	253_L	0.778	0.98
24_C	31_V	0.777	0.98
106_Y	136_P	0.777	0.98
57_A	61_G	0.777	0.98
393_A	397_F	0.776	0.98
292_L	298_F	0.773	0.98
338_G	372_I	0.773	0.98
325_P	328_D	0.772	0.98
35_Y	41_Q	0.772	0.98
260_Q	270_S	0.772	0.98
238_L	247_L	0.770	0.98
76_R	91_V	0.770	0.98
5_L	91_V	0.767	0.98
224_E	268_A	0.766	0.98
367_F	379_N	0.762	0.98
220_A	256_L	0.762	0.98
317_W	353_V	0.760	0.98
334_L	340_M	0.755	0.97
240_A	372_I	0.753	0.97
302_T	305_V	0.752	0.97
406_G	423_L	0.751	0.97
333_Q	419_W	0.750	0.97
203_V	208_A	0.749	0.97
189_L	192_P	0.748	0.97
174_K	177_S	0.746	0.97
4_H	99_H	0.746	0.97
293_C	376_L	0.743	0.97
309_S	358_I	0.742	0.97
289_H	298_F	0.739	0.97
228_D	275_E	0.738	0.97
16_D	250_R	0.737	0.97
169_C	173_P	0.736	0.97
35_Y	38_T	0.735	0.97
33_A	36_I	0.735	0.97
152_T	156_N	0.731	0.97
5_L	34_L	0.728	0.97
61_G	204_E	0.728	0.97
319_E	335_N	0.728	0.97
151_F	158_W	0.728	0.97
166_M	170_V	0.722	0.97
217_Q	259_E	0.722	0.97
104_Y	138_G	0.721	0.97
142_T	146_E	0.720	0.97
118_E	126_C	0.719	0.97
173_P	176_R	0.717	0.97
169_C	175_V	0.717	0.97
138_G	288_Y	0.716	0.97
61_G	246_G	0.715	0.97
7_W	84_S	0.713	0.96
400_F	405_Q	0.712	0.96
274_N	278_W	0.711	0.96
274_N	277_I	0.710	0.96
122_R	125_V	0.709	0.96
150_V	153_P	0.708	0.96
41_Q	45_H	0.708	0.96
46_N	369_S	0.706	0.96
175_V	178_S	0.704	0.96
104_Y	136_P	0.703	0.96
88_V	117_V	0.701	0.96
201_F	240_A	0.701	0.96
340_M	371_L	0.701	0.96
104_Y	130_D	0.701	0.96
30_R	33_A	0.700	0.96
201_F	372_I	0.697	0.96
332_R	335_N	0.694	0.96
259_E	263_A	0.692	0.96
253_L	276_L	0.692	0.96
364_E	383_W	0.691	0.96
240_A	339_W	0.689	0.96
148_Y	153_P	0.688	0.96
8_F	14_L	0.688	0.96
167_P	171_A	0.687	0.96
169_C	176_R	0.687	0.96
230_P	409_F	0.687	0.96
117_V	121_L	0.685	0.96
389_T	394_A	0.685	0.96
284_H	288_Y	0.684	0.96
394_A	397_F	0.684	0.96
185_P	188_T	0.683	0.95
225_Q	268_A	0.683	0.95
37_A	77_E	0.683	0.95
317_W	358_I	0.680	0.95
230_P	326_I	0.680	0.95
165_G	172_A	0.679	0.95
415_F	419_W	0.679	0.95
410_D	413_G	0.679	0.95
151_F	155_K	0.679	0.95
179_G	183_P	0.678	0.95
167_P	172_A	0.678	0.95
165_G	173_P	0.678	0.95
385_W	398_R	0.675	0.95
6_V	101_F	0.675	0.95
224_E	267_G	0.674	0.95
33_A	37_A	0.674	0.95
308_Q	357_L	0.673	0.95
92_C	120_A	0.670	0.95
169_C	174_K	0.669	0.95
19_A	103_N	0.668	0.95
205_E	208_A	0.665	0.95
141_M	145_H	0.665	0.95
325_P	416_I	0.663	0.95
224_E	228_D	0.662	0.95
285_L	292_L	0.661	0.95
130_D	133_V	0.659	0.95
283_R	375_D	0.658	0.94
170_V	174_K	0.658	0.94
31_V	35_Y	0.657	0.94
209_I	213_R	0.656	0.94
186_S	189_L	0.655	0.94
260_Q	269_G	0.654	0.94
165_G	171_A	0.653	0.94
195_S	336_S	0.653	0.94
90_Q	93_A	0.653	0.94
115_V	128_G	0.650	0.94
378_A	382_G	0.646	0.94
211_Q	237_R	0.646	0.94
118_E	122_R	0.645	0.94
102_Y	114_D	0.643	0.94
247_L	252_C	0.643	0.94
23_A	101_F	0.643	0.94
320_G	328_D	0.642	0.94
159_L	274_N	0.641	0.94
236_S	273_L	0.641	0.94
6_V	33_A	0.639	0.94
368_M	376_L	0.639	0.94
61_G	64_I	0.639	0.94
313_H	358_I	0.639	0.94
179_G	182_E	0.637	0.93
166_M	174_K	0.633	0.93
67_A	71_I	0.629	0.93
88_V	91_V	0.628	0.93
86_E	89_K	0.627	0.93
269_G	273_L	0.627	0.93
157_A	161_R	0.626	0.93
191_Y	194_Q	0.625	0.93
22_A	127_E	0.624	0.93
349_A	379_N	0.623	0.93
178_S	183_P	0.621	0.93
281_F	391_T	0.621	0.93
168_E	176_R	0.620	0.93
7_W	102_Y	0.619	0.93
169_C	177_S	0.614	0.92
310_N	362_E	0.613	0.92
331_M	348_T	0.613	0.92
197_D	200_H	0.613	0.92
235_T	341_H	0.612	0.92
326_I	344_L	0.609	0.92
252_C	255_R	0.608	0.92
212_L	216_C	0.608	0.92
225_Q	228_D	0.608	0.92
343_R	398_R	0.606	0.92
153_P	157_A	0.605	0.92
379_N	383_W	0.605	0.92
385_W	390_G	0.605	0.92
5_L	88_V	0.602	0.91
22_A	101_F	0.602	0.91
333_Q	336_S	0.601	0.91
103_N	130_D	0.600	0.91
58_Q	203_V	0.599	0.91
64_I	206_K	0.599	0.91
114_D	117_V	0.599	0.91
41_Q	44_T	0.598	0.91
350_S	386_A	0.594	0.91
178_S	182_E	0.594	0.91
116_E	119_R	0.593	0.91
21_A	24_C	0.591	0.91
297_P	302_T	0.591	0.91
278_W	381_G	0.590	0.91
64_I	67_A	0.588	0.90
363_G	384_Q	0.586	0.90
307_W	310_N	0.586	0.90
50_R	53_E	0.585	0.90
84_S	110_E	0.583	0.90
27_S	31_V	0.583	0.90
317_W	349_A	0.583	0.90
38_T	42_W	0.582	0.90
265_D	268_A	0.582	0.90
180_S	183_P	0.581	0.90
111_R	137_P	0.577	0.90
79_D	84_S	0.577	0.90
226_Q	229_F	0.577	0.90
192_P	196_F	0.577	0.90
154_F	280_E	0.577	0.90
361_R	364_E	0.576	0.90
231_A	234_G	0.574	0.89
116_E	120_A	0.574	0.89
248_S	251_Q	0.573	0.89
321_K	422_E	0.572	0.89
256_L	259_E	0.571	0.89
346_M	400_F	0.570	0.89
227_R	346_M	0.569	0.89
220_A	269_G	0.569	0.89
85_V	117_V	0.568	0.89
51_Q	243_A	0.568	0.89
236_S	239_S	0.568	0.89
171_A	174_K	0.568	0.89
392_D	398_R	0.567	0.89
330_A	340_M	0.566	0.89
202_P	241_S	0.566	0.89
106_Y	137_P	0.562	0.88
199_A	203_V	0.557	0.88
282_Y	285_L	0.557	0.88
40_R	85_V	0.555	0.88
7_W	88_V	0.555	0.88
209_I	255_R	0.554	0.88
200_H	237_R	0.552	0.88
270_S	274_N	0.552	0.88
208_A	241_S	0.552	0.88
105_Q	243_A	0.551	0.87
24_C	27_S	0.550	0.87
79_D	116_E	0.550	0.87
275_E	342_N	0.550	0.87
138_G	287_T	0.548	0.87
251_Q	254_H	0.547	0.87
135_L	139_A	0.547	0.87
176_R	179_G	0.547	0.87
39_P	45_H	0.546	0.87
350_S	383_W	0.546	0.87
135_L	140_V	0.545	0.87
42_W	52_A	0.542	0.87
342_N	346_M	0.542	0.87
38_T	84_S	0.541	0.86
211_Q	219_G	0.541	0.86
162_L	253_L	0.540	0.86
175_V	179_G	0.540	0.86
63_Q	73_L	0.537	0.86
309_S	359_D	0.537	0.86
238_L	242_L	0.536	0.86
268_A	271_V	0.536	0.86
297_P	300_A	0.535	0.86
211_Q	214_Q	0.535	0.86
8_F	12_L	0.535	0.86
346_M	409_F	0.533	0.86
216_C	219_G	0.531	0.85
283_R	377_A	0.531	0.85
140_V	143_G	0.530	0.85
329_A	333_Q	0.530	0.85
173_P	177_S	0.529	0.85
128_G	136_P	0.529	0.85
330_A	348_T	0.528	0.85
227_R	342_N	0.528	0.85
189_L	194_Q	0.527	0.85
352_L	356_L	0.527	0.85
5_L	95_N	0.526	0.85
193_R	370_Q	0.524	0.85
354_K	397_F	0.523	0.85
335_N	369_S	0.522	0.85
42_W	56_N	0.521	0.84
141_M	146_E	0.520	0.84
134_I	248_S	0.520	0.84
38_T	78_V	0.520	0.84
109_N	113_R	0.520	0.84
36_I	41_Q	0.519	0.84
320_G	420_L	0.519	0.84
172_A	177_S	0.519	0.84
134_I	250_R	0.519	0.84
59_L	63_Q	0.519	0.84
14_L	205_E	0.519	0.84
230_P	418_Q	0.518	0.84
317_W	352_L	0.517	0.84
351_F	354_K	0.516	0.84
324_Y	406_G	0.516	0.84
158_W	161_R	0.516	0.84
340_M	348_T	0.515	0.84
229_F	234_G	0.515	0.84
33_A	38_T	0.514	0.84
354_K	398_R	0.514	0.84
237_R	240_A	0.513	0.83
215_F	236_S	0.513	0.83
364_E	368_M	0.512	0.83
300_A	304_R	0.512	0.83
131_D	250_R	0.512	0.83
231_A	333_Q	0.511	0.83
275_E	278_W	0.511	0.83
340_M	367_F	0.511	0.83
170_V	176_R	0.510	0.83
84_S	113_R	0.510	0.83
252_C	256_L	0.510	0.83
260_Q	266_G	0.509	0.83
329_A	332_R	0.509	0.83
26_N	30_R	0.508	0.83
108_V	376_L	0.508	0.83
308_Q	311_P	0.508	0.83
382_G	393_A	0.508	0.83
55_I	59_L	0.508	0.83
6_V	23_A	0.508	0.83
133_V	284_H	0.505	0.83
325_P	423_L	0.505	0.83
349_A	353_V	0.505	0.83
403_T	423_L	0.505	0.83
147_M	289_H	0.504	0.82
399_I	402_P	0.502	0.82
105_Q	114_D	0.502	0.82
417_R	423_L	0.502	0.82
147_M	288_Y	0.501	0.82
63_Q	66_L	0.500	0.82
50_R	338_G	0.500	0.82
36_I	78_V	0.500	0.82

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4u63A	1	0.9767	100	0.054	Contact Map
1dnpA	1	0.9746	100	0.059	Contact Map
1u3dA	1	0.9767	100	0.064	Contact Map
1np7A	1	0.964	100	0.067	Contact Map
1owlA	1	0.9661	100	0.07	Contact Map
3fy4A	1	0.9788	100	0.072	Contact Map
4gu5A	1	0.9873	100	0.084	Contact Map
4k0rA	1	0.9343	100	0.085	Contact Map
4mlpC	1	0.9767	100	0.086	Contact Map
2wq7A	1	0.9809	100	0.094	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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