GREMLIN Database
DPO1 - DNA polymerase I
UniProt: P00582 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10746
Length: 928 (885)
Sequences: 2887 (1922)
Seq/√Len: 64.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
217_E220_K6.5211.00
576_E593_K6.0341.00
808_Q812_Q4.6171.00
161_G164_E4.2471.00
234_A238_Q4.0581.00
539_R864_D3.9191.00
524_N528_N3.8891.00
637_K642_D3.7511.00
818_L851_T3.6901.00
725_T729_E3.6161.00
31_S283_E3.5861.00
549_P648_I3.5421.00
126_E146_T3.4881.00
239_N242_V3.3071.00
569_K626_V3.2671.00
119_G252_I3.1901.00
240_K244_Y3.1621.00
866_W870_E3.1541.00
194_P239_N3.1041.00
558_E688_R3.0591.00
172_P175_L3.0321.00
588_T592_E2.9771.00
785_Q789_D2.9431.00
800_E804_R2.9431.00
700_V922_E2.8671.00
719_R911_D2.8351.00
526_F531_M2.8321.00
224_L234_A2.7441.00
418_G421_L2.7381.00
649_N652_T2.6921.00
406_K410_E2.6831.00
576_E589_I2.6711.00
212_D247_Y2.6231.00
876_M886_F2.6111.00
271_A274_E2.5901.00
163_E167_N2.5751.00
215_Y240_K2.5731.00
196_V232_M2.5711.00
207_G220_K2.5621.00
744_L753_Q2.5511.00
576_E588_T2.5481.00
571_H577_E2.5411.00
901_H905_E2.5231.00
570_A580_L2.5121.00
410_E433_I2.5091.00
215_Y244_Y2.5081.00
163_E166_V2.4431.00
193_V236_L2.4251.00
233_A237_E2.4251.00
190_I250_A2.4151.00
556_S642_D2.3961.00
898_K902_Q2.3841.00
873_R892_D2.3841.00
335_D338_T2.3811.00
22_Y87_D2.3591.00
517_Q523_L2.3561.00
529_I819_D2.3511.00
563_L634_A2.3461.00
546_K696_P2.3441.00
376_E379_V2.3391.00
446_S456_H2.3181.00
97_A281_K2.3171.00
73_L248_Q2.3171.00
162_P174_E2.2981.00
562_R565_E2.2941.00
261_T264_Q2.2891.00
416_K437_G2.2771.00
215_Y218_P2.2721.00
213_T216_A2.2671.00
208_L221_I2.2291.00
359_D367_N2.2271.00
212_D244_Y2.2161.00
8_P131_P2.2091.00
403_E406_K2.2031.00
574_A623_L2.2011.00
332_T495_G2.1971.00
874_V896_V2.1961.00
30_N283_E2.1781.00
210_G213_T2.1691.00
96_H108_A2.1651.00
700_V890_K2.1371.00
276_L288_T2.1331.00
866_W903_L2.1311.00
874_V892_D2.1081.00
213_T217_E2.1071.00
340_K404_L2.1071.00
336_E400_R2.1041.00
698_D890_K2.1031.00
864_D868_Q2.0921.00
730_G915_L2.0881.00
799_L803_E2.0871.00
457_D460_S2.0841.00
573_I626_V2.0831.00
177_I251_T2.0801.00
67_K72_E2.0681.00
419_Q442_T2.0531.00
858_R907_C2.0391.00
100_K106_L2.0351.00
745_P748_T2.0261.00
97_A100_K2.0241.00
123_R127_K2.0091.00
166_V172_P2.0041.00
555_H559_L1.9961.00
699_Y889_H1.9801.00
218_P237_E1.9631.00
440_F526_F1.9571.00
870_E895_A1.9571.00
147_P162_P1.9481.00
571_H580_L1.9461.00
412_E436_R1.9441.00
807_A811_E1.9411.00
581_S630_Y1.9391.00
523_L527_E1.9381.00
804_R808_Q1.9331.00
515_D518_K1.9331.00
122_A149_I1.9261.00
893_V897_A1.9241.00
589_I593_K1.9011.00
886_F900_I1.8991.00
218_P233_A1.8921.00
568_K577_E1.8761.00
886_F896_V1.8611.00
396_I401_A1.8541.00
162_P166_V1.8501.00
179_F205_L1.8441.00
490_A493_E1.8261.00
865_A869_A1.8241.00
86_D89_R1.8171.00
594_Q621_Y1.8051.00
562_R629_E1.8031.00
539_R868_Q1.7931.00
819_D908_T1.7921.00
429_A542_R1.7861.00
345_K379_V1.7851.00
347_E411_D1.7821.00
342_W381_A1.7781.00
525_V529_I1.7771.00
545_V877_I1.7701.00
702_V888_V1.7661.00
862_A903_L1.7371.00
463_E469_K1.7290.99
769_S772_G1.7250.99
39_M282_Y1.7200.99
473_F477_A1.7130.99
208_L217_E1.7060.99
373_F383_I1.7050.99
131_P148_N1.7040.99
902_Q906_N1.7010.99
896_V900_I1.7010.99
123_R254_T1.7000.99
625_K629_E1.6960.99
552_L692_A1.6950.99
444_L662_A1.6920.99
331_V338_T1.6790.99
659_Y878_M1.6720.99
193_V243_A1.6690.99
833_G836_R1.6670.99
278_L282_Y1.6620.99
84_M89_R1.6600.99
32_A281_K1.6580.99
803_E806_R1.6580.99
203_A207_G1.6560.99
426_G538_S1.6520.99
221_I236_L1.6430.99
922_E926_Q1.6430.99
893_V920_S1.6390.99
568_K572_E1.6380.99
562_R685_E1.6320.99
195_G235_K1.6280.99
486_F494_A1.6220.99
411_D414_A1.6110.99
735_R746_L1.6070.99
866_W869_A1.5990.99
334_L338_T1.5940.99
810_K836_R1.5940.99
564_A567_E1.5900.99
247_Y251_T1.5900.99
862_A865_A1.5810.99
719_R724_L1.5750.99
66_G110_S1.5710.99
19_Y23_H1.5680.99
866_W902_Q1.5600.99
588_T593_K1.5560.99
874_V889_H1.5560.99
48_S52_Q1.5540.99
179_F198_E1.5470.99
362_D365_S1.5460.99
458_M505_T1.5430.99
440_F445_E1.5400.99
565_E569_K1.5390.99
223_G233_A1.5380.99
759_A776_Q1.5340.99
126_E149_I1.5300.99
867_L896_V1.5220.99
73_L245_L1.5220.99
377_P510_L1.5210.99
660_H672_T1.5180.99
235_K239_N1.5170.99
447_Y663_V1.5160.99
601_K605_G1.5070.99
547_I648_I1.5060.99
274_E277_G1.5000.99
183_M198_E1.4930.98
618_A625_K1.4920.98
126_E148_N1.4910.98
120_T256_V1.4840.98
739_A745_P1.4840.98
462_A470_T1.4820.98
119_G254_T1.4790.98
329_N379_V1.4750.98
420_N423_Y1.4740.98
889_H892_D1.4600.98
529_I858_R1.4600.98
354_F428_L1.4560.98
462_A504_V1.4560.98
25_F37_G1.4530.98
248_Q253_K1.4490.98
713_I848_M1.4480.98
752_E756_S1.4470.98
569_K572_E1.4310.98
873_R891_D1.4310.98
602_T605_G1.4290.98
179_F183_M1.4160.98
207_G222_A1.4150.98
34_E94_P1.4150.98
797_G800_E1.4130.98
511_K515_D1.4110.98
118_I134_I1.4040.98
702_V893_V1.4030.98
276_L280_K1.4030.98
474_E479_K1.3990.98
359_D423_Y1.3970.98
828_I839_A1.3960.98
171_V202_Q1.3940.98
476_I489_I1.3890.98
897_A901_H1.3890.98
203_A223_G1.3870.98
872_P892_D1.3830.97
724_L911_D1.3800.97
816_E822_R1.3700.97
333_I381_A1.3700.97
894_D898_K1.3680.97
543_N875_R1.3670.97
212_D216_A1.3650.97
540_I543_N1.3620.97
721_K725_T1.3610.97
360_S366_A1.3580.97
388_D487_N1.3570.97
136_T141_M1.3560.97
164_E167_N1.3530.97
560_T637_K1.3480.97
93_E97_A1.3480.97
551_V691_Q1.3450.97
699_Y875_R1.3400.97
536_V861_I1.3290.97
858_R862_A1.3270.97
98_M279_F1.3250.97
700_V920_S1.3180.97
43_L98_M1.3170.97
724_L728_A1.3120.97
30_N34_E1.3080.96
352_F408_L1.3060.96
702_V897_A1.3050.96
351_V417_V1.3040.96
123_R146_T1.3030.96
370_G382_Y1.2920.96
406_K433_I1.2900.96
696_P699_Y1.2900.96
124_E128_A1.2870.96
235_K238_Q1.2870.96
59_A265_L1.2860.96
741_V759_A1.2770.96
330_Y503_D1.2760.96
888_V896_V1.2750.96
57_H130_R1.2740.96
702_V900_I1.2700.96
67_K71_D1.2690.96
355_D501_D1.2650.96
360_S423_Y1.2600.96
688_R691_Q1.2560.96
39_M94_P1.2530.95
863_V886_F1.2510.95
503_D507_Q1.2510.95
366_A423_Y1.2490.95
569_K573_I1.2470.95
556_S641_T1.2450.95
863_V903_L1.2410.95
691_Q925_D1.2400.95
833_G837_A1.2350.95
72_E111_G1.2330.95
286_R289_A1.2320.95
429_A539_R1.2300.95
721_K797_G1.2290.95
101_A278_L1.2240.95
205_L210_G1.2230.95
509_H513_W1.2160.95
704_A916_V1.2130.95
472_T475_E1.2110.95
357_E501_D1.2100.95
814_Y822_R1.2100.95
867_L874_V1.2080.94
619_L625_K1.2060.94
735_R751_S1.2050.94
545_V878_M1.1990.94
873_R889_H1.1980.94
202_Q206_Q1.1950.94
905_E915_L1.1940.94
10_I135_S1.1940.94
807_A810_K1.1840.94
336_E340_K1.1830.94
458_M504_V1.1820.94
654_R696_P1.1760.94
771_F781_R1.1730.94
142_A151_L1.1720.94
356_T368_L1.1710.93
756_S783_E1.1710.93
737_T761_N1.1700.93
234_A237_E1.1670.93
872_P895_A1.1660.93
367_N431_Y1.1640.93
551_V554_N1.1640.93
112_V257_E1.1620.93
513_W517_Q1.1570.93
819_D858_R1.1570.93
458_M470_T1.1520.93
215_Y243_A1.1520.93
190_I246_S1.1520.93
874_V900_I1.1510.93
493_E496_R1.1490.93
253_K256_V1.1460.93
485_T488_Q1.1420.93
408_L414_A1.1410.93
240_K243_A1.1410.93
68_T71_D1.1400.93
740_E794_R1.1380.92
132_V149_I1.1370.92
14_G60_V1.1330.92
35_P90_A1.1310.92
215_Y236_L1.1310.92
7_N56_T1.1310.92
194_P242_V1.1300.92
411_D416_K1.1280.92
770_A785_Q1.1270.92
444_L534_V1.1250.92
901_H918_V1.1230.92
622_P625_K1.1210.92
18_L95_L1.1210.92
103_G271_A1.1200.92
550_K554_N1.1200.92
780_P783_E1.1190.92
704_A918_V1.1170.92
141_M252_I1.1160.92
700_V893_V1.1140.92
109_V117_V1.1140.92
897_A920_S1.1090.91
531_M534_V1.1070.91
539_R543_N1.1060.91
208_L220_K1.1050.91
855_I914_L1.1050.91
339_L343_I1.1040.91
182_L200_T1.1040.91
568_K571_H1.1030.91
97_A274_E1.1000.91
584_K588_T1.0980.91
892_D896_V1.0930.91
125_A132_V1.0930.91
786_K790_L1.0910.91
181_A250_A1.0900.91
61_V117_V1.0870.91
210_G216_A1.0870.91
561_L565_E1.0850.91
445_E526_F1.0850.91
923_N926_Q1.0830.90
566_L571_H1.0830.90
80_H83_P1.0820.90
701_I885_V1.0810.90
899_Q903_L1.0790.90
430_N651_K1.0730.90
145_V151_L1.0720.90
273_E277_G1.0700.90
810_K840_E1.0680.90
740_E787_Y1.0650.90
34_E90_A1.0640.90
580_L627_I1.0640.90
26_P41_G1.0620.90
415_L439_A1.0620.90
204_L232_M1.0550.89
355_D424_D1.0550.89
170_G206_Q1.0490.89
894_D897_A1.0480.89
355_D361_L1.0470.89
731_K736_A1.0470.89
279_F287_W1.0450.89
107_L265_L1.0440.89
64_A67_K1.0430.89
827_D839_A1.0430.89
237_E240_K1.0400.89
621_Y624_P1.0350.88
331_V379_V1.0350.88
218_P240_K1.0350.88
360_S427_I1.0280.88
802_M844_I1.0280.88
581_S634_A1.0280.88
35_P87_D1.0260.88
221_I224_L1.0260.88
126_E132_V1.0260.88
410_E436_R1.0240.88
7_N130_R1.0240.88
772_G776_Q1.0240.88
866_W899_Q1.0220.88
474_E483_Q1.0220.88
340_K344_A1.0210.88
21_A45_M1.0200.88
384_P387_H1.0180.88
618_A624_P1.0170.88
425_R538_S1.0150.87
399_E403_E1.0140.87
354_F409_L1.0140.87
419_Q458_M1.0140.87
781_R785_Q1.0130.87
870_E903_L1.0080.87
64_A110_S1.0080.87
175_L210_G1.0070.87
731_K746_L1.0030.87
739_A744_L1.0020.87
805_T808_Q1.0020.87
855_I908_T1.0010.87
501_D505_T1.0010.87
214_L218_P1.0000.87
484_L489_I0.9990.87
330_Y499_A0.9970.86
23_H82_P0.9960.86
26_P37_G0.9950.86
66_G71_D0.9950.86
385_V401_A0.9950.86
23_H27_P0.9950.86
546_K694_I0.9950.86
827_D835_R0.9940.86
418_G424_D0.9910.86
400_R403_E0.9900.86
16_S154_T0.9870.86
40_Y44_N0.9850.86
825_L839_A0.9850.86
610_S613_V0.9850.86
567_E577_E0.9840.86
217_E221_I0.9830.86
183_M205_L0.9820.86
417_V509_H0.9780.85
40_Y286_R0.9780.85
64_A117_V0.9750.85
470_T504_V0.9750.85
179_F202_Q0.9750.85
218_P236_L0.9740.85
342_W346_L0.9710.85
420_N443_M0.9700.85
112_V253_K0.9700.85
560_T564_A0.9700.85
346_L373_F0.9670.85
513_W527_E0.9670.85
208_L218_P0.9670.85
179_F196_V0.9650.85
697_E890_K0.9630.84
112_V256_V0.9610.84
589_I623_L0.9590.84
838_A842_A0.9570.84
279_F284_F0.9570.84
774_A781_R0.9560.84
51_M290_D0.9540.84
341_A345_K0.9540.84
12_V17_Y0.9530.84
906_N909_R0.9520.84
280_K288_T0.9510.84
98_M278_L0.9500.84
43_L279_F0.9500.84
263_E266_E0.9470.83
468_H507_Q0.9460.83
25_F41_G0.9460.83
716_H911_D0.9460.83
426_G542_R0.9450.83
473_F476_I0.9450.83
203_A232_M0.9440.83
136_T250_A0.9440.83
546_K695_A0.9430.83
186_S198_E0.9420.83
425_R435_L0.9420.83
445_E509_H0.9410.83
336_E404_L0.9400.83
338_T341_A0.9390.83
543_N864_D0.9380.83
218_P223_G0.9370.83
774_A780_P0.9370.83
421_L534_V0.9340.83
224_L235_K0.9330.83
47_R279_F0.9320.82
521_G816_E0.9310.82
559_L641_T0.9300.82
10_I133_L0.9280.82
786_K789_D0.9270.82
341_A344_A0.9260.82
98_M282_Y0.9250.82
549_P553_H0.9240.82
39_M95_L0.9240.82
899_Q902_Q0.9240.82
101_A274_E0.9220.82
736_A740_E0.9210.82
176_I179_F0.9180.82
442_T505_T0.9180.82
198_E202_Q0.9150.81
827_D830_S0.9130.81
811_E829_K0.9130.81
109_V257_E0.9120.81
514_P518_K0.9120.81
816_E820_G0.9120.81
386_A398_R0.9100.81
812_Q815_V0.9100.81
150_T159_I0.9090.81
19_Y84_M0.9050.81
86_D90_A0.9050.81
423_Y427_I0.9020.80
750_T753_Q0.9010.80
43_L95_L0.8990.80
790_L793_E0.8950.80
657_T671_S0.8920.80
125_A129_G0.8900.79
477_A483_Q0.8900.79
560_T642_D0.8900.79
469_K475_E0.8880.79
764_L768_M0.8880.79
383_I401_A0.8870.79
618_A622_P0.8870.79
221_I233_A0.8840.79
756_S759_A0.8840.79
888_V893_V0.8810.79
420_N424_D0.8810.79
890_K922_E0.8810.79
713_I717_L0.8790.79
513_W523_L0.8790.79
570_A626_V0.8780.79
716_H910_L0.8770.78
856_I876_M0.8760.78
351_V415_L0.8760.78
802_M806_R0.8760.78
450_N464_R0.8750.78
578_F589_I0.8750.78
145_V165_V0.8740.78
23_H26_P0.8740.78
751_S755_R0.8740.78
551_V692_A0.8730.78
175_L209_G0.8730.78
497_Y501_D0.8710.78
442_T501_D0.8680.78
351_V509_H0.8670.78
430_N542_R0.8660.78
805_T815_V0.8650.78
367_N398_R0.8650.78
371_L383_I0.8640.77
139_K180_L0.8630.77
365_S650_P0.8620.77
374_A380_A0.8610.77
515_D520_K0.8610.77
356_T424_D0.8610.77
277_G281_K0.8610.77
124_E127_K0.8600.77
919_G927_A0.8570.77
696_P887_E0.8570.77
789_D793_E0.8560.77
343_I408_L0.8530.77
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218_P290_D0.5510.44
58_A101_A0.5510.44
40_Y284_F0.5500.44
150_T161_G0.5500.44
447_Y664_T0.5500.44
103_G270_P0.5500.44
475_E478_G0.5490.44
556_S645_P0.5490.44
29_T35_P0.5490.44
466_L504_V0.5490.44
498_A502_A0.5490.44
122_A126_E0.5490.44
443_M458_M0.5480.44
118_I141_M0.5470.44
357_E443_M0.5470.44
643_K646_L0.5470.44
664_T670_S0.5460.44
374_A499_A0.5460.44
856_I886_F0.5460.44
459_D500_E0.5460.44
842_A846_A0.5450.44
818_L910_L0.5450.44
260_L264_Q0.5450.44
664_T672_T0.5450.44
755_R763_G0.5440.44
334_L381_A0.5440.44
30_N35_P0.5440.44
176_I250_A0.5440.44
506_L510_L0.5430.43
825_L842_A0.5420.43
386_A487_N0.5420.43
326_S329_N0.5420.43
361_L424_D0.5410.43
457_D501_D0.5410.43
142_A165_V0.5410.43
450_N665_A0.5410.43
269_Q371_L0.5410.43
335_D339_L0.5410.43
452_V664_T0.5400.43
421_L655_V0.5400.43
755_R769_S0.5390.43
48_S51_M0.5390.43
419_Q505_T0.5390.43
788_M842_A0.5390.43
12_V58_A0.5390.43
665_A846_A0.5390.43
445_E513_W0.5390.43
149_I241_E0.5380.43
416_K438_I0.5380.43
119_G180_L0.5380.43
219_E233_A0.5380.43
470_T473_F0.5370.43
215_Y223_G0.5360.43
660_H670_S0.5360.43
107_L430_N0.5360.43
403_E407_P0.5360.43
57_H263_E0.5350.43
756_S787_Y0.5350.43
14_G137_G0.5350.43
809_A828_I0.5350.43
566_L570_A0.5340.42
411_D436_R0.5340.42
476_I486_F0.5340.42
511_K514_P0.5340.42
402_L405_L0.5340.42
222_A233_A0.5340.42
180_L250_A0.5340.42
25_F44_N0.5340.42
357_E457_D0.5340.42
769_S776_Q0.5340.42
893_V896_V0.5330.42
419_Q457_D0.5330.42
26_P30_N0.5330.42
584_K851_T0.5320.42
814_Y824_Y0.5320.42
615_E621_Y0.5320.42
450_N454_G0.5320.42
480_G483_Q0.5320.42
525_V805_T0.5310.42
357_E423_Y0.5310.42
535_P539_R0.5310.42
94_P281_K0.5310.42
473_F483_Q0.5290.42
200_T232_M0.5290.42
69_F768_M0.5280.42
177_I180_L0.5270.42
11_L59_A0.5270.42
599_L602_T0.5260.42
364_I649_N0.5260.42
120_T257_E0.5250.41
738_A761_N0.5250.41
447_Y854_D0.5250.41
683_N716_H0.5250.41
196_V243_A0.5250.41
9_L927_A0.5240.41
417_V886_F0.5240.41
461_L512_M0.5240.41
684_E752_E0.5230.41
817_T850_G0.5220.41
681_V925_D0.5220.41
491_L495_G0.5220.41
80_H245_L0.5210.41
236_L243_A0.5210.41
681_V689_I0.5210.41
775_R780_P0.5210.41
57_H182_L0.5210.41
23_H85_P0.5210.41
870_E899_Q0.5210.41
357_E473_F0.5200.41
462_A468_H0.5200.41
516_L906_N0.5190.41
44_N111_G0.5190.41
683_N752_E0.5190.41
146_T149_I0.5190.41
11_L755_R0.5190.41
223_G240_K0.5190.41
83_P89_R0.5190.41
420_N497_Y0.5190.41
511_K865_A0.5190.41
15_S153_N0.5180.41
765_I768_M0.5180.41
432_G512_M0.5180.41
9_L130_R0.5170.41
17_Y141_M0.5170.41
606_A855_I0.5170.41
611_E615_E0.5170.41
900_I905_E0.5150.40
19_Y83_P0.5150.40
558_E565_E0.5150.40
158_T168_K0.5150.40
573_I623_L0.5150.40
11_L121_L0.5150.40
154_T740_E0.5150.40
866_W895_A0.5140.40
445_E512_M0.5140.40
211_L236_L0.5130.40
730_G735_R0.5130.40
118_I144_L0.5130.40
19_Y82_P0.5130.40
479_K687_R0.5130.40
256_V587_Q0.5130.40
724_L923_N0.5130.40
478_G481_K0.5120.40
232_M235_K0.5120.40
554_N557_E0.5110.40
44_N846_A0.5110.40
355_D420_N0.5110.40
8_P130_R0.5100.40
367_N651_K0.5100.40
216_A244_Y0.5100.40
410_E416_K0.5100.40
736_A774_A0.5090.40
346_L350_P0.5090.40
459_D501_D0.5080.39
61_V823_L0.5080.39
11_L796_P0.5080.39
177_I250_A0.5080.39
471_I501_D0.5080.39
287_W290_D0.5080.39
765_I838_A0.5070.39
471_I496_R0.5070.39
163_E174_E0.5070.39
497_Y500_E0.5060.39
679_I693_F0.5060.39
102_M247_Y0.5050.39
334_L491_L0.5050.39
215_Y239_N0.5050.39
127_K149_I0.5040.39
382_Y494_A0.5040.39
420_N427_I0.5030.39
445_E531_M0.5030.39
72_E75_E0.5030.39
183_M186_S0.5030.39
402_L431_Y0.5020.39
339_L384_P0.5020.39
433_I436_R0.5010.39
266_E528_N0.5010.39
224_L232_M0.5000.39
80_H136_T0.5000.39
22_Y35_P0.5000.39
331_V335_D0.5000.39
420_N457_D0.5000.39
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1bgxT 1 0.8836 100 0.274 Contact Map
2kfnA 1 0.6476 100 0.474 Contact Map
4x0qA 1 0.625 100 0.483 Contact Map
4yfuA 1 0.6239 100 0.505 Contact Map
4xvkA 1 0.6379 100 0.506 Contact Map
4bwjA 1 0.5765 100 0.515 Contact Map
1x9mA 1 0.5884 100 0.557 Contact Map
3ikmA 1 0.7166 100 0.757 Contact Map
3h7iA 1 0.292 100 0.788 Contact Map
1exnA 1 0.2759 100 0.789 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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