T0907_T2N7P6_1_516 - CASP12 - GREMLIN Contacts

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T0907_T2N7P6_1_516 - T0907_T2N7P6 1-516

ID:	96	Sequences: MAVGSNGNANRQKMINLMYLVFIAMMALNVSSEVLDGFDKVDKSLTSSIDGSDKRNNLVLSELNTAYRTNPEKVKVWYERSLVLQKEADSLCTFIDDLKLAIARESDGKDAKVNDIRRKDNLDASSVVMLNPINGKGSTLRKEVDKFRELVATLMTDKAKLKLIEQALNTESGTKGKSWESSLFENMPTVAAITLLTKLQSDVRYAQGEVLADLVKSVDVGDYRVNSITAQVIPQSQIVMSGDTYKANIVLSSVDTTQRPDVFVNGKLLSPENMGLFTATAGAPGTYPVKGYIEMMGNDGVKIRRDFESEYFVTEPMASVAPTMMNVLYAGIDNPINIAVPGVAQQNVSATINNGTLTRRGNLWIARPTKVGSEAIISVTAQSGGRTIQMAKTTLRVRALPDPLPYIEYKDVQGNTKRFKGGRLGKREILAAGGIKAALDDDLLEVNYTVVKFQLVFYDSMGNSIPEVSDGASFSERQKRQIQNLGKGKRFYVTEVIARGPDGIERKIPAIEVIVN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	516 (479)
Sequences:	1575 (1197)
Seq/√Len:	54.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
235_Q	246_K	5.741	1.00
136_K	139_T	5.070	1.00
374_E	394_T	5.019	1.00
244_T	278_T	4.831	1.00
78_Y	82_L	4.480	1.00
333_D	367_R	4.455	1.00
88_A	147_F	4.196	1.00
75_K	79_E	3.659	1.00
101_A	136_K	3.651	1.00
286_T	310_E	3.549	1.00
347_N	382_Q	3.355	1.00
146_K	150_L	3.275	1.00
42_D	46_T	3.175	1.00
328_L	366_A	3.160	1.00
142_K	146_K	3.151	1.00
89_D	93_T	2.988	1.00
87_E	150_L	2.856	1.00
90_S	143_E	2.831	1.00
138_S	142_K	2.780	1.00
165_E	168_L	2.778	1.00
181_S	185_E	2.754	1.00
454_Q	495_E	2.738	1.00
320_V	393_T	2.712	1.00
292_Y	304_R	2.615	1.00
86_K	90_S	2.600	1.00
328_L	336_I	2.491	1.00
290_K	308_E	2.474	1.00
402_D	506_R	2.461	1.00
163_L	168_L	2.456	1.00
139_T	143_E	2.426	1.00
95_I	196_L	2.386	1.00
248_N	276_L	2.352	1.00
352_I	355_G	2.322	1.00
288_P	310_E	2.308	1.00
76_V	80_R	2.306	1.00
323_T	337_N	2.291	1.00
332_I	443_L	2.288	1.00
349_S	382_Q	2.263	1.00
88_A	203_V	2.254	1.00
319_S	341_P	2.250	1.00
198_K	202_D	2.246	1.00
94_F	143_E	2.161	1.00
84_L	154_L	2.142	1.00
239_V	281_A	2.112	1.00
246_K	278_T	2.111	1.00
64_N	82_L	2.100	1.00
99_K	200_Q	2.080	1.00
226_N	256_T	2.078	1.00
471_G	475_S	2.074	1.00
406_Y	438_A	2.071	1.00
323_T	363_L	2.004	1.00
163_L	170_T	1.973	1.00
469_S	478_Q	1.958	1.00
261_D	268_L	1.925	1.00
96_D	100_L	1.921	1.00
92_C	200_Q	1.914	1.00
60_L	85_Q	1.911	1.00
238_I	314_T	1.897	1.00
332_I	444_L	1.896	1.00
227_S	256_T	1.894	1.00
17_L	23_I	1.893	1.00
48_S	52_S	1.846	0.99
376_I	392_K	1.842	0.99
85_Q	89_D	1.827	0.99
234_P	245_Y	1.822	0.99
296_M	302_K	1.816	0.99
338_I	350_A	1.813	0.99
474_F	482_I	1.802	0.99
340_V	390_M	1.792	0.99
333_D	365_I	1.782	0.99
291_G	307_F	1.781	0.99
143_E	146_K	1.758	0.99
244_T	280_T	1.756	0.99
248_N	274_M	1.748	0.99
135_G	138_S	1.728	0.99
225_V	228_I	1.725	0.99
89_D	204_R	1.719	0.99
262_V	275_G	1.703	0.99
83_V	86_K	1.690	0.99
73_K	257_T	1.633	0.99
449_T	499_R	1.618	0.98
228_I	253_S	1.612	0.98
297_G	301_V	1.607	0.98
165_E	170_T	1.606	0.98
354_N	375_A	1.601	0.98
340_V	381_A	1.583	0.98
93_T	97_D	1.578	0.98
165_E	169_N	1.571	0.98
455_L	482_I	1.569	0.98
283_A	287_Y	1.568	0.98
137_G	180_E	1.559	0.98
290_K	306_D	1.551	0.98
378_S	389_Q	1.551	0.98
455_L	474_F	1.546	0.98
79_E	83_V	1.534	0.98
230_A	311_Y	1.533	0.98
400_L	439_L	1.527	0.98
95_I	203_V	1.523	0.98
61_S	64_N	1.517	0.98
22_F	26_M	1.516	0.98
498_A	508_I	1.515	0.98
261_D	294_E	1.498	0.97
335_P	444_L	1.498	0.97
294_E	304_R	1.493	0.97
97_D	101_A	1.484	0.97
376_I	394_T	1.483	0.97
324_M	445_E	1.482	0.97
405_P	496_V	1.482	0.97
469_S	475_S	1.477	0.97
123_D	127_V	1.469	0.97
100_L	104_R	1.469	0.97
141_R	180_E	1.462	0.97
360_R	363_L	1.454	0.97
26_M	29_N	1.453	0.97
53_D	204_R	1.449	0.97
241_S	315_E	1.441	0.97
503_G	506_R	1.428	0.97
288_P	308_E	1.401	0.96
455_L	478_Q	1.401	0.96
57_N	61_S	1.396	0.96
319_S	340_V	1.385	0.96
64_N	68_R	1.385	0.96
126_S	185_E	1.382	0.96
18_M	24_A	1.372	0.96
406_Y	436_K	1.371	0.96
343_V	381_A	1.368	0.96
322_P	395_L	1.365	0.95
94_F	136_K	1.363	0.95
121_N	124_A	1.356	0.95
297_G	303_I	1.349	0.95
125_S	192_A	1.345	0.95
434_G	474_F	1.332	0.95
352_I	366_A	1.324	0.95
448_Y	500_G	1.321	0.95
108_G	112_K	1.307	0.94
245_Y	289_V	1.306	0.94
500_G	503_G	1.286	0.94
406_Y	440_D	1.280	0.94
382_Q	385_G	1.275	0.93
82_L	85_Q	1.274	0.93
398_R	443_L	1.271	0.93
249_I	289_V	1.269	0.93
450_V	498_A	1.246	0.93
42_D	99_K	1.244	0.93
330_A	368_P	1.244	0.93
289_V	309_S	1.238	0.92
73_K	77_W	1.237	0.92
284_P	287_Y	1.233	0.92
73_K	222_D	1.232	0.92
453_F	469_S	1.232	0.92
338_I	377_I	1.230	0.92
352_I	375_A	1.230	0.92
197_T	200_Q	1.229	0.92
454_Q	462_G	1.224	0.92
149_E	153_T	1.211	0.92
39_D	119_K	1.202	0.91
263_F	268_L	1.200	0.91
231_Q	250_V	1.198	0.91
425_G	428_E	1.197	0.91
486_G	489_K	1.196	0.91
141_R	145_D	1.193	0.91
46_T	99_K	1.192	0.91
94_F	98_L	1.184	0.91
217_S	220_V	1.184	0.91
503_G	508_I	1.182	0.91
101_A	104_R	1.180	0.90
232_V	237_Q	1.173	0.90
435_I	493_V	1.172	0.90
281_A	287_Y	1.167	0.90
63_L	81_S	1.166	0.90
131_N	135_G	1.165	0.90
83_V	87_E	1.158	0.90
91_L	144_V	1.157	0.90
336_I	366_A	1.152	0.89
84_L	151_V	1.151	0.89
382_Q	388_I	1.146	0.89
286_T	312_F	1.139	0.89
44_S	198_K	1.139	0.89
17_L	22_F	1.138	0.89
105_E	127_V	1.136	0.89
325_M	335_P	1.132	0.89
15_I	24_A	1.130	0.88
355_G	375_A	1.129	0.88
83_V	150_L	1.126	0.88
474_F	478_Q	1.125	0.88
178_S	181_S	1.120	0.88
324_M	444_L	1.120	0.88
292_Y	306_D	1.119	0.88
332_I	448_Y	1.118	0.88
322_P	335_P	1.115	0.88
319_S	322_P	1.110	0.88
324_M	335_P	1.104	0.87
355_G	366_A	1.103	0.87
357_L	366_A	1.100	0.87
294_E	302_K	1.098	0.87
145_D	149_E	1.097	0.87
452_K	497_I	1.095	0.87
343_V	379_V	1.093	0.87
164_I	168_L	1.091	0.87
15_I	19_Y	1.091	0.87
167_A	170_T	1.090	0.87
476_E	479_K	1.090	0.87
23_I	26_M	1.082	0.86
26_M	31_S	1.082	0.86
497_I	507_K	1.082	0.86
389_Q	392_K	1.080	0.86
163_L	167_A	1.079	0.86
366_A	377_I	1.078	0.86
87_E	90_S	1.077	0.86
188_P	200_Q	1.059	0.85
506_R	509_P	1.053	0.85
168_L	172_S	1.049	0.84
14_M	19_Y	1.049	0.84
426_K	430_L	1.043	0.84
76_V	79_E	1.039	0.84
226_N	255_D	1.033	0.84
67_Y	74_V	1.032	0.83
382_Q	386_R	1.029	0.83
85_Q	207_Q	1.026	0.83
399_A	402_D	1.026	0.83
15_I	18_M	1.021	0.83
235_Q	248_N	1.018	0.83
95_I	140_L	1.012	0.82
366_A	375_A	1.010	0.82
451_V	499_R	1.009	0.82
236_S	243_D	1.009	0.82
475_S	478_Q	1.000	0.81
336_I	357_L	0.998	0.81
359_R	362_N	0.995	0.81
246_K	276_L	0.994	0.81
14_M	17_L	0.991	0.81
324_M	332_I	0.989	0.81
400_L	448_Y	0.986	0.81
29_N	120_D	0.980	0.80
142_K	145_D	0.980	0.80
400_L	442_D	0.975	0.80
128_V	136_K	0.975	0.80
18_M	21_V	0.970	0.79
340_V	379_V	0.966	0.79
219_D	222_D	0.961	0.79
225_V	253_S	0.960	0.79
439_L	448_Y	0.956	0.78
352_I	357_L	0.955	0.78
467_E	477_R	0.949	0.78
490_R	494_T	0.949	0.78
407_I	435_I	0.943	0.77
357_L	360_R	0.940	0.77
234_P	237_Q	0.937	0.77
330_A	369_T	0.932	0.77
96_D	200_Q	0.928	0.76
90_S	93_T	0.925	0.76
340_V	391_A	0.922	0.76
277_F	280_T	0.916	0.75
56_N	211_L	0.913	0.75
502_D	506_R	0.913	0.75
64_N	78_Y	0.912	0.75
41_V	194_T	0.911	0.75
319_S	337_N	0.905	0.75
406_Y	412_V	0.901	0.74
138_S	180_E	0.900	0.74
225_V	250_V	0.900	0.74
84_L	214_L	0.898	0.74
327_V	396_R	0.897	0.74
295_M	303_I	0.896	0.74
326_N	396_R	0.896	0.74
70_N	75_K	0.895	0.74
262_V	293_I	0.894	0.74
412_V	440_D	0.894	0.74
499_R	502_D	0.892	0.73
102_I	189_T	0.891	0.73
383_S	386_R	0.890	0.73
90_S	94_F	0.887	0.73
453_F	478_Q	0.887	0.73
66_A	215_V	0.884	0.73
174_T	177_K	0.884	0.73
400_L	500_G	0.881	0.73
264_V	277_F	0.880	0.72
44_S	202_D	0.876	0.72
322_P	337_N	0.875	0.72
79_E	82_L	0.873	0.72
54_K	57_N	0.871	0.72
56_N	207_Q	0.869	0.71
496_V	508_I	0.866	0.71
19_Y	24_A	0.866	0.71
138_S	141_R	0.866	0.71
84_L	87_E	0.865	0.71
41_V	45_L	0.863	0.71
70_N	255_D	0.861	0.71
404_L	440_D	0.859	0.71
262_V	277_F	0.859	0.71
151_V	206_A	0.856	0.70
106_S	189_T	0.855	0.70
384_G	387_T	0.855	0.70
457_F	481_Q	0.853	0.70
88_A	204_R	0.852	0.70
291_G	306_D	0.852	0.70
223_Y	305_R	0.850	0.70
327_V	398_R	0.849	0.70
261_D	376_I	0.847	0.70
244_T	281_A	0.845	0.69
18_M	26_M	0.844	0.69
150_L	153_T	0.843	0.69
77_W	217_S	0.843	0.69
321_A	379_V	0.842	0.69
431_A	479_K	0.841	0.69
400_L	447_N	0.838	0.69
221_G	226_N	0.837	0.69
53_D	57_N	0.837	0.69
240_M	314_T	0.836	0.69
442_D	446_V	0.836	0.69
84_L	150_L	0.831	0.68
144_V	148_R	0.830	0.68
229_T	274_M	0.829	0.68
91_L	203_V	0.828	0.68
92_C	204_R	0.827	0.68
60_L	207_Q	0.825	0.67
236_S	239_V	0.824	0.67
330_A	399_A	0.823	0.67
109_K	112_K	0.820	0.67
146_K	149_E	0.819	0.67
55_R	205_Y	0.814	0.66
337_N	393_T	0.812	0.66
14_M	24_A	0.810	0.66
77_W	218_V	0.809	0.66
505_E	508_I	0.808	0.66
163_L	172_S	0.806	0.66
356_T	359_R	0.806	0.66
19_Y	22_F	0.804	0.65
332_I	400_L	0.804	0.65
202_D	493_V	0.802	0.65
241_S	283_A	0.798	0.65
400_L	438_A	0.798	0.65
325_M	396_R	0.796	0.65
60_L	81_S	0.795	0.65
411_D	414_G	0.792	0.64
102_I	125_S	0.791	0.64
231_Q	234_P	0.790	0.64
164_I	170_T	0.790	0.64
323_T	335_P	0.789	0.64
437_A	498_A	0.789	0.64
497_I	505_E	0.788	0.64
122_L	125_S	0.788	0.64
226_N	257_T	0.787	0.64
234_P	265_N	0.786	0.64
63_L	211_L	0.784	0.64
448_Y	506_R	0.783	0.63
500_G	506_R	0.783	0.63
326_N	335_P	0.782	0.63
454_Q	494_T	0.782	0.63
437_A	450_V	0.780	0.63
20_L	23_I	0.779	0.63
98_L	136_K	0.779	0.63
400_L	503_G	0.779	0.63
300_G	368_P	0.775	0.63
460_S	484_N	0.774	0.63
156_T	159_A	0.773	0.62
457_F	491_F	0.771	0.62
408_E	434_G	0.771	0.62
359_R	363_L	0.771	0.62
122_L	186_N	0.771	0.62
459_D	462_G	0.770	0.62
324_M	446_V	0.770	0.62
77_W	80_R	0.763	0.61
476_E	480_R	0.761	0.61
331_G	396_R	0.761	0.61
435_I	441_D	0.760	0.61
163_L	169_N	0.759	0.61
239_V	243_D	0.758	0.61
66_A	74_V	0.757	0.61
55_R	59_V	0.757	0.61
344_A	347_N	0.755	0.61
52_S	208_G	0.754	0.60
295_M	305_R	0.753	0.60
188_P	197_T	0.752	0.60
338_I	366_A	0.750	0.60
265_N	290_K	0.749	0.60
219_D	223_Y	0.749	0.60
231_Q	252_S	0.747	0.60
14_M	18_M	0.747	0.60
281_A	312_F	0.747	0.60
91_L	95_I	0.747	0.60
322_P	325_M	0.744	0.59
50_D	54_K	0.743	0.59
335_P	396_R	0.741	0.59
456_V	494_T	0.740	0.59
351_T	387_T	0.740	0.59
286_T	362_N	0.740	0.59
21_V	24_A	0.736	0.59
51_G	205_Y	0.736	0.59
132_P	450_V	0.735	0.59
439_L	443_L	0.734	0.58
316_P	379_V	0.734	0.58
506_R	510_A	0.733	0.58
382_Q	387_T	0.731	0.58
156_T	160_K	0.727	0.58
264_V	269_L	0.725	0.57
479_K	482_I	0.723	0.57
288_P	370_K	0.722	0.57
45_L	194_T	0.722	0.57
64_N	142_K	0.721	0.57
239_V	245_Y	0.721	0.57
408_E	428_E	0.720	0.57
349_S	359_R	0.720	0.57
49_I	201_S	0.719	0.57
107_D	110_D	0.719	0.57
474_F	479_K	0.718	0.57
34_V	39_D	0.715	0.56
325_M	342_G	0.712	0.56
327_V	331_G	0.712	0.56
183_L	195_L	0.711	0.56
98_L	140_L	0.711	0.56
94_F	139_T	0.711	0.56
47_S	50_D	0.710	0.56
54_K	293_I	0.710	0.56
315_E	393_T	0.709	0.56
188_P	202_D	0.709	0.56
139_T	142_K	0.708	0.56
336_I	340_V	0.705	0.55
63_L	66_A	0.705	0.55
335_P	442_D	0.703	0.55
284_P	315_E	0.703	0.55
215_V	218_V	0.703	0.55
341_P	378_S	0.702	0.55
480_R	484_N	0.700	0.55
400_L	413_Q	0.700	0.55
505_E	509_P	0.699	0.55
328_L	368_P	0.699	0.55
87_E	154_L	0.695	0.54
343_V	383_S	0.695	0.54
348_V	364_W	0.693	0.54
280_T	306_D	0.693	0.54
208_G	275_G	0.692	0.54
485_L	489_K	0.691	0.54
55_R	208_G	0.689	0.54
137_G	141_R	0.688	0.54
446_V	500_G	0.688	0.54
375_A	397_V	0.688	0.54
20_L	27_A	0.688	0.54
324_M	443_L	0.686	0.53
80_R	154_L	0.685	0.53
14_M	21_V	0.678	0.52
463_N	481_Q	0.677	0.52
241_S	281_A	0.677	0.52
263_F	292_Y	0.677	0.52
25_M	361_G	0.677	0.52
232_V	307_F	0.675	0.52
84_L	153_T	0.675	0.52
436_K	439_L	0.674	0.52
281_A	313_V	0.674	0.52
71_P	199_L	0.673	0.52
103_A	108_G	0.672	0.52
304_R	307_F	0.669	0.52
508_I	511_I	0.668	0.51
253_S	260_P	0.668	0.51
349_S	380_T	0.668	0.51
53_D	92_C	0.665	0.51
381_A	390_M	0.663	0.51
87_E	151_V	0.662	0.51
70_N	257_T	0.660	0.51
84_L	211_L	0.659	0.50
458_Y	490_R	0.659	0.50
157_D	160_K	0.658	0.50
328_L	355_G	0.656	0.50
24_A	27_A	0.655	0.50
122_L	185_E	0.655	0.50
243_D	281_A	0.652	0.50
175_K	196_L	0.651	0.50
65_T	69_T	0.651	0.50
103_A	189_T	0.650	0.49
233_I	250_V	0.647	0.49
127_V	493_V	0.646	0.49
325_M	444_L	0.646	0.49
148_R	152_A	0.644	0.49
16_N	24_A	0.644	0.49
380_T	390_M	0.644	0.49
103_A	193_I	0.644	0.49
358_T	369_T	0.643	0.49
340_V	348_V	0.643	0.49
71_P	75_K	0.643	0.49
459_D	489_K	0.643	0.49
33_E	56_N	0.642	0.49
234_P	264_V	0.641	0.49
84_L	395_L	0.640	0.48
122_L	194_T	0.640	0.48
138_S	178_S	0.638	0.48
87_E	146_K	0.638	0.48
351_T	354_N	0.637	0.48
316_P	387_T	0.635	0.48
225_V	275_G	0.633	0.48
336_I	387_T	0.633	0.48
233_I	264_V	0.633	0.48
321_A	343_V	0.630	0.47
123_D	126_S	0.629	0.47
230_A	265_N	0.628	0.47
230_A	305_R	0.627	0.47
265_N	269_L	0.626	0.47
122_L	126_S	0.625	0.47
407_I	430_L	0.625	0.47
67_Y	75_K	0.624	0.47
87_E	153_T	0.623	0.47
218_V	222_D	0.622	0.46
222_D	225_V	0.621	0.46
456_V	464_S	0.621	0.46
58_L	62_E	0.619	0.46
229_T	254_V	0.619	0.46
16_N	22_F	0.618	0.46
463_N	477_R	0.618	0.46
227_S	253_S	0.617	0.46
482_I	485_L	0.617	0.46
354_N	360_R	0.617	0.46
19_Y	27_A	0.617	0.46
237_Q	309_S	0.616	0.46
325_M	331_G	0.616	0.46
425_G	433_G	0.614	0.46
318_A	379_V	0.614	0.46
262_V	265_N	0.613	0.46
86_K	149_E	0.613	0.46
42_D	197_T	0.613	0.46
59_V	62_E	0.613	0.46
457_F	485_L	0.612	0.45
480_R	483_Q	0.612	0.45
147_F	203_V	0.611	0.45
350_A	377_I	0.610	0.45
44_S	52_S	0.610	0.45
98_L	129_M	0.609	0.45
236_S	240_M	0.609	0.45
245_Y	277_F	0.609	0.45
14_M	20_L	0.608	0.45
378_S	392_K	0.608	0.45
243_D	388_I	0.608	0.45
358_T	367_R	0.607	0.45
281_A	341_P	0.606	0.45
317_M	340_V	0.606	0.45
57_N	121_N	0.606	0.45
232_V	289_V	0.605	0.45
402_D	448_Y	0.604	0.45
104_R	226_N	0.603	0.44
82_L	86_K	0.601	0.44
457_F	463_N	0.601	0.44
279_A	311_Y	0.601	0.44
108_G	111_A	0.601	0.44
500_G	508_I	0.600	0.44
439_L	492_Y	0.598	0.44
332_I	452_K	0.597	0.44
208_G	212_A	0.596	0.44
164_I	169_N	0.596	0.44
153_T	156_T	0.595	0.44
60_L	211_L	0.595	0.44
84_L	204_R	0.594	0.44
30_V	36_D	0.593	0.43
408_E	432_A	0.592	0.43
18_M	23_I	0.588	0.43
440_D	495_E	0.587	0.43
456_V	492_Y	0.587	0.43
232_V	309_S	0.587	0.43
321_A	398_R	0.586	0.43
14_M	22_F	0.586	0.43
101_A	128_V	0.586	0.43
85_Q	103_A	0.584	0.42
411_D	452_K	0.583	0.42
52_S	55_R	0.582	0.42
79_E	407_I	0.582	0.42
245_Y	309_S	0.581	0.42
147_F	341_P	0.581	0.42
209_E	291_G	0.580	0.42
100_L	103_A	0.580	0.42
388_I	391_A	0.575	0.42
356_T	367_R	0.573	0.41
234_P	289_V	0.572	0.41
471_G	478_Q	0.572	0.41
20_L	24_A	0.572	0.41
439_L	445_E	0.571	0.41
16_N	19_Y	0.571	0.41
29_N	32_S	0.571	0.41
225_V	260_P	0.570	0.41
454_Q	468_V	0.570	0.41
18_M	22_F	0.570	0.41
324_M	327_V	0.570	0.41
177_K	182_S	0.570	0.41
213_D	217_S	0.569	0.41
40_K	191_A	0.569	0.41
176_G	288_P	0.569	0.41
400_L	446_V	0.568	0.41
232_V	247_A	0.567	0.41
377_I	395_L	0.567	0.41
453_F	482_I	0.566	0.41
210_V	221_G	0.566	0.41
73_K	301_V	0.566	0.41
22_F	30_V	0.566	0.41
263_F	307_F	0.565	0.40
218_V	253_S	0.564	0.40
367_R	445_E	0.564	0.40
197_T	300_G	0.564	0.40
22_F	25_M	0.564	0.40
41_V	201_S	0.563	0.40
357_L	375_A	0.563	0.40
18_M	27_A	0.563	0.40
230_A	234_P	0.562	0.40
99_K	197_T	0.560	0.40
340_V	389_Q	0.559	0.40
102_I	106_S	0.559	0.40
164_I	487_K	0.557	0.40
71_P	193_I	0.557	0.40
34_V	186_N	0.557	0.40
17_L	34_V	0.556	0.40
264_V	345_Q	0.556	0.40
147_F	151_V	0.556	0.40
101_A	139_T	0.555	0.39
104_R	112_K	0.555	0.39
367_R	483_Q	0.555	0.39
60_L	218_V	0.555	0.39
339_A	342_G	0.554	0.39
248_N	305_R	0.553	0.39
405_P	431_A	0.553	0.39
120_D	383_S	0.552	0.39
223_Y	228_I	0.552	0.39
15_I	26_M	0.551	0.39
279_A	288_P	0.551	0.39
184_F	191_A	0.550	0.39
17_L	28_L	0.550	0.39
41_V	191_A	0.550	0.39
337_N	350_A	0.550	0.39
151_V	310_E	0.550	0.39
354_N	368_P	0.550	0.39
325_M	332_I	0.547	0.39
188_P	208_G	0.547	0.39
438_A	443_L	0.546	0.39
292_Y	307_F	0.546	0.39
136_K	143_E	0.546	0.39
67_Y	78_Y	0.546	0.39
352_I	368_P	0.545	0.38
350_A	357_L	0.544	0.38
14_M	23_I	0.543	0.38
19_Y	23_I	0.541	0.38
184_F	417_K	0.541	0.38
231_Q	311_Y	0.541	0.38
450_V	453_F	0.540	0.38
272_E	276_L	0.539	0.38
458_Y	489_K	0.539	0.38
383_S	389_Q	0.538	0.38
86_K	147_F	0.537	0.38
21_V	28_L	0.537	0.38
52_S	205_Y	0.537	0.38
54_K	58_L	0.535	0.37
195_L	198_K	0.535	0.37
243_D	340_V	0.533	0.37
324_M	396_R	0.532	0.37
42_D	194_T	0.531	0.37
358_T	365_I	0.531	0.37
130_L	180_E	0.531	0.37
318_A	322_P	0.531	0.37
16_N	33_E	0.531	0.37
133_I	178_S	0.529	0.37
411_D	415_N	0.528	0.37
45_L	197_T	0.527	0.37
411_D	430_L	0.526	0.37
220_V	228_I	0.526	0.37
239_V	279_A	0.525	0.36
200_Q	204_R	0.525	0.36
256_T	260_P	0.524	0.36
225_V	258_Q	0.524	0.36
353_N	491_F	0.523	0.36
228_I	297_G	0.523	0.36
210_V	214_L	0.521	0.36
45_L	208_G	0.520	0.36
350_A	379_V	0.520	0.36
461_M	465_I	0.520	0.36
467_E	471_G	0.519	0.36
25_M	119_K	0.519	0.36
319_S	381_A	0.519	0.36
244_T	383_S	0.519	0.36
126_S	186_N	0.518	0.36
81_S	84_L	0.517	0.36
467_E	481_Q	0.517	0.36
176_G	496_V	0.517	0.36
32_S	186_N	0.517	0.36
24_A	29_N	0.517	0.36
27_A	38_F	0.516	0.36
65_T	68_R	0.516	0.36
35_L	185_E	0.516	0.36
119_K	201_S	0.516	0.36
249_I	291_G	0.516	0.36
18_M	29_N	0.515	0.35
439_L	503_G	0.514	0.35
351_T	380_T	0.513	0.35
107_D	209_E	0.513	0.35
435_I	450_V	0.512	0.35
399_A	448_Y	0.512	0.35
316_P	320_V	0.512	0.35
15_I	20_L	0.512	0.35
471_G	486_G	0.512	0.35
453_F	496_V	0.512	0.35
128_V	188_P	0.512	0.35
457_F	468_V	0.511	0.35
34_V	121_N	0.510	0.35
258_Q	311_Y	0.510	0.35
66_A	69_T	0.510	0.35
343_V	378_S	0.509	0.35
231_Q	248_N	0.508	0.35
80_R	83_V	0.508	0.35
169_N	176_G	0.506	0.35
201_S	255_D	0.505	0.34
253_S	256_T	0.504	0.34
179_W	453_F	0.504	0.34
23_I	33_E	0.503	0.34
35_L	194_T	0.503	0.34
16_N	23_I	0.503	0.34
251_L	258_Q	0.502	0.34
472_A	495_E	0.502	0.34
104_R	203_V	0.502	0.34
102_I	210_V	0.502	0.34
400_L	445_E	0.502	0.34
132_P	194_T	0.502	0.34
91_L	212_A	0.502	0.34
434_G	473_S	0.501	0.34
320_V	349_S	0.501	0.34
354_N	376_I	0.501	0.34
169_N	172_S	0.500	0.34

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3pdd_A	1	0.3391	86.8	0.97	Contact Map
4p3w_A	1	0.3062	41	0.978	Contact Map
4p99_A	1	0.5271	37.5	0.979	Contact Map
4m03_A	1	0.2965	34.9	0.979	Contact Map
1v05_A	1	0.1725	23.6	0.981	Contact Map
2k7q_A	1	0.3333	18.7	0.982	Contact Map
2cql_A	1	0.0891	18.1	0.982	Contact Map
2nqc_A	1	0.157	16.7	0.982	Contact Map
3hnw_A	1	0.1783	15.2	0.983	Contact Map
1wdi_A	1	0.155	13.1	0.983	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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