T0947_1_220 - CASP12 - GREMLIN Contacts

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T0947_1_220 - T0947 1-220

ID:	129	Sequences: MIAILESEVPCVTKDLMKKLIFPLIALTLVSLQSFAGSKATDRSYKYCDDMTQIDKLLDRSRESVERIQREGLNIERIVVSKDKRQLYLVSGDTLLRTYTVAFGWNFIGHKQFEGDGKTPEGIYSIDYKNPKSQFTKSLHVDYPNKADIAYAKSQGRSPGGDIMIHGLPSNPQKYERISKIHPYDWTLGCIAVTNKEIEEIYALVKERTLVEVCKISPTK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	220 (182)
Sequences:	166 (127)
Seq/√Len:	9.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
127_D	140_H	4.897	1.00
126_I	139_L	3.952	0.98
160_G	166_H	3.439	0.96
99_Y	200_E	3.160	0.93
129_K	207_E	2.920	0.90
78_I	126_I	2.871	0.90
82_K	143_Y	2.691	0.86
116_D	143_Y	2.550	0.83
137_K	199_E	2.483	0.81
56_K	59_D	2.460	0.80
111_K	116_D	2.360	0.77
186_W	192_A	2.203	0.72
82_K	116_D	2.154	0.70
179_S	194_T	2.121	0.69
130_N	133_S	2.015	0.65
111_K	143_Y	1.998	0.64
111_K	122_G	1.951	0.62
145_N	148_D	1.902	0.60
200_E	204_L	1.881	0.59
144_P	190_C	1.868	0.59
160_G	165_I	1.843	0.58
75_I	88_Y	1.838	0.58
182_H	194_T	1.800	0.56
82_K	111_K	1.784	0.55
103_F	185_D	1.770	0.55
124_Y	148_D	1.769	0.55
79_V	137_K	1.728	0.53
33_Q	37_G	1.702	0.52
119_T	129_K	1.674	0.50
152_A	156_G	1.673	0.50
103_F	192_A	1.657	0.50
116_D	120_P	1.606	0.47
130_N	138_S	1.603	0.47
85_R	89_L	1.591	0.47
116_D	187_T	1.563	0.45
111_K	187_T	1.524	0.44
194_T	197_E	1.523	0.44
208_R	211_V	1.498	0.43
64_S	79_V	1.458	0.41
136_T	139_L	1.427	0.40
121_E	187_T	1.407	0.39
49_D	59_D	1.407	0.39
111_K	120_P	1.385	0.38
116_D	122_G	1.379	0.38
209_T	213_V	1.364	0.37
86_Q	185_D	1.353	0.36
73_L	198_I	1.313	0.35
92_G	195_N	1.306	0.35
78_I	139_L	1.303	0.34
193_V	201_I	1.288	0.34
185_D	192_A	1.285	0.34
85_R	185_D	1.269	0.33
193_V	197_E	1.265	0.33
120_P	143_Y	1.264	0.33
106_N	153_K	1.252	0.32
34_S	126_I	1.206	0.31
116_D	121_E	1.205	0.31
136_T	206_K	1.203	0.31
143_Y	187_T	1.201	0.30
124_Y	160_G	1.199	0.30
159_P	197_E	1.172	0.29
55_D	62_R	1.160	0.29
122_G	143_Y	1.157	0.29
80_V	211_V	1.127	0.28
39_K	53_Q	1.113	0.27
29_L	32_L	1.111	0.27
139_L	193_V	1.109	0.27
166_H	190_C	1.098	0.27
78_I	198_I	1.088	0.26
129_K	191_I	1.085	0.26
105_W	117_G	1.078	0.26
40_A	198_I	1.066	0.26
144_P	189_G	1.040	0.25
129_K	134_Q	1.039	0.25
121_E	148_D	1.034	0.25
191_I	211_V	1.030	0.24
124_Y	167_G	1.028	0.24
34_S	146_K	1.027	0.24
128_Y	202_Y	1.021	0.24
69_Q	94_T	1.018	0.24
87_L	146_K	1.016	0.24
103_F	135_F	1.012	0.24
179_S	182_H	1.010	0.24
117_G	188_L	1.008	0.24
80_V	104_G	1.006	0.24
74_N	88_Y	1.006	0.24
63_E	98_T	1.005	0.24
169_P	207_E	0.999	0.23
128_Y	205_V	0.995	0.23
47_Y	50_D	0.989	0.23
122_G	189_G	0.989	0.23
121_E	192_A	0.986	0.23
78_I	94_T	0.984	0.23
82_K	186_W	0.983	0.23
187_T	192_A	0.983	0.23
75_I	205_V	0.979	0.23
118_K	169_P	0.979	0.23
137_K	164_M	0.969	0.22
119_T	148_D	0.968	0.22
60_R	94_T	0.968	0.22
82_K	120_P	0.964	0.22
93_D	98_T	0.962	0.22
47_Y	54_I	0.946	0.22
109_G	198_I	0.945	0.22
66_E	69_Q	0.944	0.22
126_I	136_T	0.943	0.22
121_E	143_Y	0.933	0.21
82_K	187_T	0.932	0.21
111_K	115_G	0.930	0.21
122_G	126_I	0.929	0.21
102_A	192_A	0.927	0.21
48_C	61_S	0.925	0.21
97_R	200_E	0.925	0.21
207_E	210_L	0.914	0.21
146_K	149_I	0.901	0.20
120_P	189_G	0.900	0.20
121_E	141_V	0.899	0.20
123_I	210_L	0.894	0.20
46_K	137_K	0.889	0.20
102_A	197_E	0.879	0.20
111_K	145_N	0.876	0.20
156_G	212_E	0.875	0.20
116_D	148_D	0.874	0.20
83_D	162_D	0.865	0.19
53_Q	84_K	0.864	0.19
55_D	153_K	0.862	0.19
89_L	119_T	0.862	0.19
97_R	204_L	0.855	0.19
164_M	169_P	0.855	0.19
138_S	162_D	0.846	0.19
156_G	159_P	0.843	0.19
133_S	201_I	0.838	0.19
45_Y	128_Y	0.838	0.19
119_T	122_G	0.838	0.19
124_Y	145_N	0.836	0.19
138_S	161_G	0.834	0.19
120_P	126_I	0.834	0.19
42_D	45_Y	0.829	0.18
76_E	93_D	0.823	0.18
143_Y	186_W	0.811	0.18
46_K	68_I	0.808	0.18
103_F	186_W	0.805	0.18
117_G	130_N	0.800	0.18
42_D	49_D	0.793	0.17
109_G	200_E	0.790	0.17
137_K	170_S	0.787	0.17
167_G	189_G	0.787	0.17
89_L	112_Q	0.785	0.17
65_V	181_I	0.781	0.17
88_Y	205_V	0.780	0.17
116_D	192_A	0.779	0.17
111_K	121_E	0.779	0.17
148_D	192_A	0.777	0.17
208_R	213_V	0.774	0.17
65_V	98_T	0.772	0.17
67_R	84_K	0.770	0.17
65_V	69_Q	0.768	0.17
184_Y	205_V	0.767	0.17
54_I	146_K	0.766	0.17
113_F	158_S	0.764	0.17
129_K	202_Y	0.761	0.17
80_V	186_W	0.759	0.17
99_Y	193_V	0.753	0.16
40_A	43_R	0.749	0.16
74_N	205_V	0.748	0.16
59_D	114_E	0.748	0.16
82_K	122_G	0.747	0.16
80_V	203_A	0.747	0.16
103_F	121_E	0.747	0.16
67_R	205_V	0.745	0.16
89_L	107_F	0.745	0.16
83_D	212_E	0.741	0.16
111_K	148_D	0.741	0.16
82_K	192_A	0.738	0.16
46_K	98_T	0.736	0.16
88_Y	211_V	0.734	0.16
174_K	180_K	0.731	0.16
97_R	210_L	0.730	0.16
33_Q	36_A	0.729	0.16
138_S	164_M	0.726	0.16
125_S	183_P	0.725	0.16
161_G	166_H	0.725	0.16
137_K	182_H	0.722	0.16
68_I	83_D	0.717	0.16
162_D	179_S	0.708	0.15
161_G	167_G	0.702	0.15
122_G	187_T	0.700	0.15
173_Q	181_I	0.698	0.15
144_P	166_H	0.697	0.15
85_R	103_F	0.693	0.15
121_E	195_N	0.690	0.15
31_S	90_V	0.682	0.15
116_D	119_T	0.678	0.15
99_Y	201_I	0.676	0.15
85_R	152_A	0.676	0.15
129_K	185_D	0.671	0.15
72_G	181_I	0.664	0.14
46_K	54_I	0.662	0.14
160_G	164_M	0.662	0.14
91_S	210_L	0.660	0.14
49_D	153_K	0.654	0.14
87_L	191_I	0.654	0.14
43_R	159_P	0.649	0.14
102_A	164_M	0.640	0.14
142_D	148_D	0.639	0.14
75_I	80_V	0.639	0.14
78_I	90_V	0.631	0.14
106_N	149_I	0.626	0.14
54_I	65_V	0.625	0.14
179_S	206_K	0.622	0.14
78_I	184_Y	0.619	0.13
98_T	170_S	0.617	0.13
115_G	189_G	0.617	0.13
104_G	119_T	0.610	0.13
157_R	193_V	0.601	0.13
47_Y	149_I	0.600	0.13
47_Y	60_R	0.597	0.13
163_I	187_T	0.591	0.13
145_N	151_Y	0.590	0.13
99_Y	133_S	0.588	0.13
50_D	57_L	0.587	0.13
188_L	202_Y	0.583	0.13
163_I	166_H	0.581	0.13
93_D	96_L	0.579	0.13
122_G	190_C	0.575	0.13
42_D	92_G	0.574	0.13
36_A	202_Y	0.574	0.13
72_G	93_D	0.573	0.13
120_P	187_T	0.564	0.12
102_A	152_A	0.563	0.12
89_L	130_N	0.563	0.12
90_V	213_V	0.562	0.12
96_L	191_I	0.562	0.12
86_Q	94_T	0.562	0.12
180_K	202_Y	0.561	0.12
43_R	92_G	0.559	0.12
98_T	131_P	0.557	0.12
119_T	159_P	0.557	0.12
167_G	191_I	0.557	0.12
135_F	188_L	0.556	0.12
43_R	62_R	0.556	0.12
136_T	162_D	0.551	0.12
66_E	71_E	0.547	0.12
116_D	145_N	0.543	0.12
46_K	58_L	0.543	0.12
53_Q	95_L	0.542	0.12
56_K	106_N	0.542	0.12
88_Y	202_Y	0.541	0.12
131_P	202_Y	0.540	0.12
109_G	148_D	0.538	0.12
81_S	201_I	0.537	0.12
144_P	148_D	0.537	0.12
143_Y	192_A	0.535	0.12
62_R	97_R	0.533	0.12
92_G	168_L	0.528	0.12
160_G	167_G	0.528	0.12
31_S	34_S	0.525	0.12
152_A	160_G	0.524	0.12
133_S	138_S	0.522	0.12
104_G	129_K	0.518	0.12
54_I	71_E	0.516	0.11
121_E	156_G	0.512	0.11
84_K	108_I	0.512	0.11
39_K	55_D	0.511	0.11
205_V	211_V	0.509	0.11
114_E	201_I	0.509	0.11
46_K	135_F	0.507	0.11
45_Y	56_K	0.505	0.11
102_A	199_E	0.504	0.11
85_R	104_G	0.504	0.11
115_G	144_P	0.503	0.11
54_I	64_S	0.500	0.11
145_N	160_G	0.500	0.11

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4xzz_A	1	0.8409	100	0.677	Contact Map
4jmn_A	1	0.8591	99.9	0.708	Contact Map
4z7a_A	1	0.8773	99.9	0.711	Contact Map
4xvo_A	1	0.8636	99.9	0.716	Contact Map
4lzh_A	1	0.8318	99.9	0.724	Contact Map
4k73_A	1	0.8182	99.9	0.725	Contact Map
3vyp_A	1	0.9136	99.9	0.726	Contact Map
1zat_A	1	0.8818	99.9	0.73	Contact Map
4qrb_A	1	0.8682	99.9	0.731	Contact Map
4lpq_A	1	0.8591	99.9	0.735	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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