T0944_1_277 - CASP12 - GREMLIN Contacts

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T0944_1_277 - T0944 1-277

ID:	117	Sequences: MCGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRDPDKYCPSYNKSPQSNSPVLLSRLHFEKDADSSERIIAPMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVVLADGFYEWQRCQGTNQRQPYFIYFPQIKTEKSGSIGAADSPENWEKVWDNWRLLTMAGIFDCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKLIHPTENITFHAVSSVVNNSRNNTPECLAPVAENLYFQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_10
Length:	277 (225)
Sequences:	2666 (1917)
Seq/√Len:	127.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
102_V	198_I	4.426	1.00
41_S	262_N	4.230	1.00
50_S	195_Y	3.771	1.00
52_V	73_M	3.459	1.00
179_I	196_T	3.428	1.00
111_P	181_D	3.392	1.00
18_C	175_T	2.983	1.00
122_A	176_M	2.776	1.00
218_D	222_A	2.760	1.00
255_V	263_T	2.713	1.00
138_Q	251_A	2.653	1.00
144_F	147_I	2.588	1.00
143_Y	248_T	2.546	1.00
17_A	223_V	2.543	1.00
78_V	192_L	2.296	1.00
124_G	141_F	2.289	1.00
47_Q	92_F	2.159	1.00
7_C	44_K	2.149	1.00
44_K	50_S	2.114	1.00
147_I	172_R	2.092	1.00
6_S	141_F	2.022	1.00
54_L	71_A	2.008	1.00
99_S	198_I	1.966	1.00
116_R	181_D	1.939	1.00
142_I	209_I	1.939	1.00
255_V	266_C	1.909	1.00
51_P	70_I	1.898	1.00
176_M	197_I	1.896	1.00
136_Q	254_S	1.878	1.00
142_I	206_L	1.766	1.00
143_Y	250_H	1.758	1.00
9_L	123_D	1.753	1.00
265_E	268_A	1.750	1.00
182_C	193_Y	1.732	1.00
119_V	175_T	1.716	1.00
103_M	238_L	1.695	1.00
202_S	211_H	1.689	1.00
41_S	48_S	1.681	1.00
120_V	195_Y	1.647	1.00
187_E	190_D	1.646	1.00
205_G	247_I	1.622	1.00
144_F	247_I	1.594	1.00
132_Q	136_Q	1.564	1.00
174_L	247_I	1.541	1.00
94_T	107_S	1.540	1.00
255_V	265_E	1.526	1.00
119_V	223_V	1.496	1.00
54_L	193_Y	1.471	1.00
142_I	249_F	1.467	1.00
50_S	120_V	1.465	1.00
88_S	92_F	1.450	1.00
141_F	250_H	1.446	1.00
82_F	90_L	1.413	1.00
145_P	248_T	1.407	1.00
99_S	241_I	1.405	1.00
125_F	203_C	1.400	1.00
54_L	73_M	1.382	1.00
253_S	257_N	1.380	1.00
52_V	195_Y	1.365	1.00
41_S	44_K	1.364	1.00
5_T	50_S	1.347	1.00
144_F	174_L	1.346	1.00
216_I	247_I	1.334	1.00
182_C	191_V	1.306	1.00
52_V	120_V	1.301	1.00
7_C	51_P	1.286	1.00
94_T	108_F	1.283	1.00
240_L	243_P	1.282	1.00
144_F	172_R	1.275	1.00
112_L	237_A	1.275	1.00
110_V	113_G	1.272	1.00
119_V	217_L	1.269	1.00
111_P	116_R	1.264	1.00
78_V	87_P	1.246	1.00
71_A	193_Y	1.225	1.00
118_C	178_G	1.221	0.99
55_S	68_R	1.217	0.99
21_Q	67_E	1.200	0.99
131_C	136_Q	1.197	0.99
74_R	87_P	1.192	0.99
5_T	51_P	1.192	0.99
80_S	110_V	1.191	0.99
174_L	223_V	1.189	0.99
14_L	121_L	1.188	0.99
204_K	207_S	1.179	0.99
228_D	231_E	1.172	0.99
110_V	114_K	1.169	0.99
106_R	109_K	1.166	0.99
17_A	172_R	1.164	0.99
102_V	112_L	1.158	0.99
185_P	190_D	1.153	0.99
225_K	231_E	1.151	0.99
209_I	249_F	1.151	0.99
73_M	193_Y	1.133	0.99
45_S	259_S	1.114	0.99
84_E	88_S	1.113	0.99
74_R	194_S	1.104	0.99
184_E	191_V	1.101	0.99
11_R	15_T	1.100	0.99
203_C	243_P	1.095	0.99
141_F	267_L	1.087	0.99
68_R	224_S	1.085	0.99
82_F	91_Q	1.083	0.99
90_L	93_N	1.081	0.99
200_V	215_A	1.074	0.99
132_Q	135_N	1.072	0.99
225_K	239_K	1.070	0.99
185_P	191_V	1.063	0.99
125_F	206_L	1.059	0.99
5_T	122_A	1.042	0.98
129_Q	208_D	1.033	0.98
47_Q	259_S	1.029	0.98
120_V	178_G	1.026	0.98
15_T	20_Y	1.019	0.98
103_M	112_L	1.013	0.98
138_Q	270_V	1.009	0.98
254_S	257_N	0.994	0.98
54_L	69_I	0.989	0.98
5_T	195_Y	0.982	0.98
129_Q	140_Y	0.974	0.97
43_N	128_W	0.973	0.97
9_L	173_L	0.963	0.97
263_T	266_C	0.962	0.97
13_V	16_R	0.957	0.97
201_D	211_H	0.954	0.97
120_V	197_I	0.949	0.97
200_V	243_P	0.946	0.97
110_V	181_D	0.945	0.97
203_C	208_D	0.944	0.97
175_T	223_V	0.940	0.97
233_S	236_E	0.918	0.96
10_P	13_V	0.915	0.96
222_A	225_K	0.907	0.96
248_T	269_P	0.907	0.96
91_Q	94_T	0.903	0.96
87_P	192_L	0.895	0.96
84_E	93_N	0.894	0.96
202_S	205_G	0.892	0.96
80_S	181_D	0.892	0.96
9_L	13_V	0.891	0.96
38_Y	72_P	0.889	0.96
1_M	4_R	0.886	0.96
90_L	94_T	0.886	0.96
130_R	137_R	0.882	0.95
112_L	238_L	0.881	0.95
143_Y	171_W	0.875	0.95
225_K	236_E	0.874	0.95
51_P	72_P	0.868	0.95
77_L	181_D	0.864	0.95
206_L	209_I	0.858	0.95
250_H	269_P	0.848	0.94
116_R	180_F	0.840	0.94
20_Y	70_I	0.840	0.94
253_S	261_N	0.839	0.94
219_G	223_V	0.839	0.94
84_E	90_L	0.836	0.94
127_E	210_H	0.832	0.94
56_R	69_I	0.832	0.94
8_H	123_D	0.832	0.94
261_N	266_C	0.830	0.94
94_T	111_P	0.827	0.94
121_L	195_Y	0.827	0.94
82_F	93_N	0.818	0.93
131_C	135_N	0.811	0.93
205_G	208_D	0.804	0.93
38_Y	51_P	0.803	0.93
125_F	205_G	0.802	0.93
9_L	14_L	0.794	0.92
252_V	256_V	0.794	0.92
102_V	238_L	0.791	0.92
185_P	188_G	0.785	0.92
78_V	91_Q	0.783	0.92
95_T	259_S	0.777	0.91
130_R	211_H	0.775	0.91
94_T	196_T	0.765	0.91
133_G	136_Q	0.759	0.90
5_T	197_I	0.758	0.90
100_D	201_D	0.758	0.90
6_S	267_L	0.757	0.90
18_C	53_L	0.752	0.90
204_K	244_T	0.747	0.90
49_N	74_R	0.747	0.90
198_I	215_A	0.746	0.90
222_A	242_H	0.745	0.90
264_P	268_A	0.742	0.89
177_A	215_A	0.740	0.89
4_R	128_W	0.737	0.89
18_C	223_V	0.733	0.89
14_L	173_L	0.730	0.89
129_Q	138_Q	0.727	0.88
125_F	208_D	0.723	0.88
144_F	173_L	0.722	0.88
7_C	41_S	0.720	0.88
180_F	193_Y	0.716	0.88
205_G	249_F	0.715	0.88
261_N	265_E	0.715	0.88
252_V	267_L	0.711	0.87
46_P	128_W	0.705	0.87
84_E	91_Q	0.702	0.87
6_S	124_G	0.702	0.87
95_T	257_N	0.701	0.87
4_R	43_N	0.699	0.86
206_L	249_F	0.698	0.86
218_D	246_N	0.698	0.86
94_T	98_R	0.688	0.85
103_M	113_G	0.686	0.85
232_V	237_A	0.685	0.85
201_D	207_S	0.679	0.85
218_D	223_V	0.677	0.85
54_L	182_C	0.676	0.84
205_G	245_E	0.676	0.84
112_L	241_I	0.673	0.84
102_V	179_I	0.671	0.84
56_R	67_E	0.668	0.84
77_L	94_T	0.664	0.83
101_T	105_K	0.663	0.83
77_L	196_T	0.663	0.83
8_H	141_F	0.660	0.83
99_S	200_V	0.653	0.82
203_C	247_I	0.652	0.82
104_E	107_S	0.652	0.82
202_S	207_S	0.649	0.82
54_L	180_F	0.644	0.82
78_V	194_S	0.644	0.82
118_C	180_F	0.643	0.81
215_A	237_A	0.641	0.81
45_S	48_S	0.635	0.81
87_P	194_S	0.635	0.81
73_M	195_Y	0.634	0.81
110_V	116_R	0.633	0.80
3_G	46_P	0.633	0.80
123_D	141_F	0.630	0.80
236_E	239_K	0.628	0.80
3_G	128_W	0.627	0.80
53_L	119_V	0.622	0.79
222_A	240_L	0.622	0.79
252_V	266_C	0.618	0.79
49_N	72_P	0.618	0.79
43_N	46_P	0.617	0.79
200_V	213_M	0.613	0.78
130_R	254_S	0.613	0.78
121_L	173_L	0.613	0.78
15_T	22_D	0.612	0.78
93_N	199_T	0.609	0.78
217_L	223_V	0.609	0.78
244_T	247_I	0.607	0.78
251_A	270_V	0.606	0.77
6_S	266_C	0.606	0.77
126_Y	266_C	0.605	0.77
203_C	213_M	0.604	0.77
22_D	36_D	0.603	0.77
124_G	143_Y	0.601	0.77
80_S	116_R	0.600	0.77
77_L	111_P	0.597	0.76
45_S	95_T	0.596	0.76
255_V	261_N	0.596	0.76
5_T	176_M	0.596	0.76
225_K	228_D	0.588	0.75
186_P	189_G	0.587	0.75
204_K	208_D	0.586	0.75
23_R	70_I	0.584	0.75
125_F	216_I	0.584	0.75
106_R	111_P	0.583	0.75
94_T	199_T	0.582	0.75
201_D	242_H	0.580	0.74
184_E	190_D	0.579	0.74
119_V	174_L	0.576	0.74
202_S	249_F	0.574	0.74
97_C	196_T	0.572	0.73
15_T	23_R	0.570	0.73
53_L	121_L	0.570	0.73
3_G	43_N	0.568	0.73
15_T	21_Q	0.566	0.73
3_G	95_T	0.565	0.72
8_H	38_Y	0.563	0.72
215_A	243_P	0.560	0.72
137_R	254_S	0.558	0.72
20_Y	68_R	0.557	0.71
208_D	249_F	0.556	0.71
203_C	216_I	0.556	0.71
114_K	232_V	0.555	0.71
80_S	83_K	0.553	0.71
96_N	210_H	0.550	0.70
130_R	135_N	0.549	0.70
4_R	46_P	0.549	0.70
84_E	194_S	0.549	0.70
114_K	181_D	0.546	0.70
137_R	258_N	0.545	0.70
69_I	193_Y	0.545	0.70
131_C	138_Q	0.542	0.69
90_L	196_T	0.542	0.69
250_H	267_L	0.542	0.69
171_W	248_T	0.541	0.69
84_E	95_T	0.540	0.69
80_S	107_S	0.540	0.69
144_F	246_N	0.539	0.69
51_P	195_Y	0.539	0.69
184_E	193_Y	0.538	0.69
123_D	180_F	0.538	0.69
178_G	196_T	0.537	0.69
57_L	66_S	0.531	0.68
234_T	239_K	0.529	0.67
46_P	97_C	0.529	0.67
228_D	233_S	0.526	0.67
55_S	138_Q	0.526	0.67
55_S	66_S	0.525	0.67
144_F	216_I	0.524	0.67
139_P	173_L	0.522	0.66
126_Y	205_G	0.521	0.66
198_I	225_K	0.520	0.66
12_D	16_R	0.520	0.66
213_M	243_P	0.519	0.66
187_E	270_V	0.517	0.66
74_R	192_L	0.517	0.66
254_S	261_N	0.515	0.65
76_G	95_T	0.515	0.65
139_P	254_S	0.513	0.65
6_S	126_Y	0.513	0.65
130_R	136_Q	0.513	0.65
75_W	97_C	0.512	0.65
52_V	71_A	0.512	0.65
113_G	137_R	0.511	0.65
200_V	203_C	0.510	0.65
12_D	15_T	0.509	0.65
94_T	105_K	0.509	0.65
113_G	232_V	0.508	0.64
203_C	244_T	0.507	0.64
259_S	266_C	0.507	0.64
220_E	268_A	0.507	0.64
251_A	269_P	0.506	0.64
92_F	199_T	0.506	0.64
138_Q	257_N	0.505	0.64
183_W	186_P	0.505	0.64
8_H	11_R	0.502	0.63
205_G	211_H	0.501	0.63
174_L	216_I	0.501	0.63
87_P	228_D	0.500	0.63
19_A	68_R	0.500	0.63

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2icu_A	1	0.7437	100	0.227	Contact Map
2bdv_A	1	0.7437	100	0.228	Contact Map
2f20_A	1	0.8123	100	0.237	Contact Map
2aeg_A	1	0.7365	100	0.278	Contact Map
1zn6_A	1	0.7148	100	0.31	Contact Map
2jd3_A	1	0.3249	23.7	0.963	Contact Map
5dgg_A	1	0.1877	5.8	0.972	Contact Map
2ovr_B	1	0.2491	4.6	0.973	Contact Map
2b3g_B	1	0.0866	4.5	0.973	Contact Map
3epw_A	1	0.2058	4.1	0.974	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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