YERC - BACSU - GREMLIN Contacts

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YERC - Uncharacterized protein YerC

UniProt:	Q7BVT7	Sequences: MQIDKLRGKELDQLFNSILSLKDLEECYRFFDDLCTINEIQSLAQRLEVARMLREGNTYHKIETETGASTATISRVKRCLNYGNDAYEMALDRVKETETESSSK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	104 (93)
Sequences:	636 (394)
Seq/√Len:	40.9

BACSU - YERC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
16_N	24_L	6.519	1.00
18_I	31_F	3.216	1.00
15_F	31_F	2.952	1.00
54_R	88_E	2.912	1.00
35_C	43_L	2.592	1.00
79_C	91_L	2.299	1.00
12_D	28_Y	2.125	0.99
14_L	34_L	2.087	0.99
27_C	31_F	2.083	0.99
19_L	27_C	1.944	0.99
26_E	93_R	1.921	0.99
58_T	63_E	1.899	0.99
13_Q	48_E	1.874	0.98
63_E	70_T	1.796	0.98
8_G	11_L	1.735	0.97
13_Q	51_R	1.714	0.97
20_S	90_A	1.712	0.97
49_V	68_A	1.698	0.97
15_F	27_C	1.666	0.97
22_K	93_R	1.628	0.96
15_F	18_I	1.389	0.91
55_E	95_K	1.375	0.91
60_H	77_K	1.329	0.89
45_Q	68_A	1.319	0.89
60_H	63_E	1.307	0.88
26_E	89_M	1.269	0.87
16_N	20_S	1.239	0.85
32_D	82_Y	1.195	0.83
34_L	43_L	1.187	0.83
9_K	65_E	1.161	0.81
54_R	95_K	1.158	0.81
61_K	65_E	1.155	0.81
17_S	47_L	1.154	0.81
11_L	60_H	1.152	0.81
13_Q	47_L	1.147	0.81
88_E	92_D	1.146	0.80
10_E	38_N	1.089	0.77
38_N	43_L	1.083	0.77
37_I	82_Y	1.063	0.75
10_E	48_E	1.057	0.75
17_S	30_F	1.035	0.73
57_N	65_E	1.034	0.73
9_K	97_T	1.016	0.72
29_R	89_M	0.999	0.71
89_M	93_R	0.999	0.71
21_L	30_F	0.991	0.70
32_D	84_N	0.985	0.69
18_I	27_C	0.972	0.68
74_S	78_R	0.969	0.68
36_T	86_A	0.964	0.68
11_L	48_E	0.952	0.67
45_Q	49_V	0.948	0.66
20_S	24_L	0.937	0.66
16_N	97_T	0.934	0.65
37_I	80_L	0.923	0.64
79_C	84_N	0.909	0.63
26_E	30_F	0.908	0.63
40_I	79_C	0.900	0.62
68_A	76_V	0.894	0.62
54_R	80_L	0.881	0.61
68_A	74_S	0.851	0.58
40_I	61_K	0.844	0.57
50_A	70_T	0.841	0.57
51_R	55_E	0.817	0.55
20_S	94_V	0.816	0.55
45_Q	74_S	0.812	0.54
35_C	71_A	0.789	0.52
7_R	11_L	0.784	0.52
14_L	61_K	0.776	0.51
8_G	32_D	0.773	0.51
10_E	44_A	0.768	0.50
48_E	65_E	0.756	0.49
21_L	27_C	0.756	0.49
36_T	87_Y	0.745	0.48
6_L	78_R	0.744	0.48
76_V	80_L	0.743	0.48
45_Q	50_A	0.735	0.47
16_N	25_E	0.727	0.47
34_L	37_I	0.726	0.46
29_R	85_D	0.725	0.46
38_N	61_K	0.707	0.45
57_N	61_K	0.706	0.45
35_C	40_I	0.705	0.45
22_K	97_T	0.700	0.44
19_L	22_K	0.696	0.44
47_L	50_A	0.687	0.43
63_E	76_V	0.678	0.42
17_S	20_S	0.663	0.41
89_M	92_D	0.659	0.40
13_Q	52_M	0.655	0.40
55_E	96_E	0.652	0.40
69_S	72_T	0.646	0.39
37_I	71_A	0.645	0.39
41_Q	47_L	0.643	0.39
17_S	89_M	0.643	0.39
44_A	94_V	0.636	0.38
63_E	77_K	0.634	0.38
17_S	90_A	0.626	0.37
49_V	81_N	0.626	0.37
11_L	44_A	0.616	0.37
18_I	93_R	0.611	0.36
66_T	71_A	0.611	0.36
47_L	51_R	0.605	0.36
13_Q	16_N	0.597	0.35
20_S	23_D	0.592	0.35
8_G	77_K	0.591	0.34
71_A	74_S	0.584	0.34
9_K	13_Q	0.583	0.34
76_V	85_D	0.583	0.34
44_A	58_T	0.571	0.33
42_S	68_A	0.571	0.33
47_L	77_K	0.570	0.33
77_K	81_N	0.568	0.33
72_T	87_Y	0.561	0.32
45_Q	83_G	0.556	0.32
47_L	94_V	0.547	0.31
50_A	74_S	0.542	0.31
25_E	34_L	0.541	0.30
79_C	88_E	0.540	0.30
20_S	54_R	0.533	0.30
43_L	76_V	0.531	0.30
13_Q	77_K	0.530	0.30
29_R	79_C	0.526	0.29
32_D	79_C	0.526	0.29
84_N	91_L	0.524	0.29
34_L	90_A	0.521	0.29
14_L	35_C	0.519	0.29
22_K	88_E	0.514	0.28
34_L	81_N	0.514	0.28
34_L	60_H	0.514	0.28
56_G	62_I	0.512	0.28
64_T	78_R	0.512	0.28
79_C	87_Y	0.512	0.28
20_S	97_T	0.510	0.28
40_I	44_A	0.510	0.28
18_I	30_F	0.508	0.28
49_V	66_T	0.507	0.28
15_F	44_A	0.504	0.28
50_A	63_E	0.504	0.28
38_N	58_T	0.500	0.27

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3frwA	2	0.9423	99.9	0.407	Contact Map
3korA	2	0.9519	99.4	0.674	Contact Map
1jhgA	2	0.9519	98.8	0.747	Contact Map
1tc3C	1	0.4808	94.8	0.863	Contact Map
1u78A	1	0.6538	92	0.876	Contact Map
3iwfA	2	0.7212	91.3	0.879	Contact Map
4ivnA	2	0.6731	91.1	0.879	Contact Map
2m8eA	1	0.5481	90.8	0.88	Contact Map
1u2wA	2	0.8462	89.2	0.884	Contact Map
4fcyA	4	0.6923	88.7	0.885	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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