YISV - BACSU - GREMLIN Contacts

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YISV - Uncharacterized HTH-type transcriptional regulator YisV

UniProt:	Q796Q6	Sequences: MTLSQWQPSRKSDVPLHRQIEQYMKDKILHGEWAVGTKIPSQRTLADMFQVNRSTVTAAIDELTSQGLLEGRKGGGTKVVNSTWSVLTAEPPLDWSDYVRSGIHRANSSIIQAINQNEPRADIIRLGTGELSPDLVPADTIGRMFQQINPGVLSLGYEQPKGNRQLREAVADHLKGKKIHVSPSAILIVSGALQALQLISIGLLKRDSVILTEKPSYLQSLHVFQSAGMRLRGLPMDDEGVKAGLVSSNRKQYGGQLLYTIPSFHNPTGTVMSEQRRKEIISLSKKEQMPIIEDDAYGDLWFEEKPPQPLKAMDHEGNILYLGAFSKTVSPGLRIGWLAGPEPVIERLADIKMQTDYGSSGLSQWAAAEWLSQGYYEEHLTWVRRKLKERRDAAVHFLERYAGDIATWRIPAGGFYIWVTFHKNLPVSRFFYELLKRQVLVNPGYIYDGEDRNSIRLSYSYASLGDLETGIKAAAETARRLMMS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	484 (375)
Sequences:	18896 (13075)
Seq/√Len:	675.2

ECOLI - YDCR YJIR YBDL AVTA ALAC ALAA MALY
BACSU - YISV YDFD GABR YHDI YDEL YCXD YDEF PATA MTNE AAT2 YUGH AAT1 CBL AAT3 HIS8
HALSA - Q9HQK2 Q9HRX4 Q9HRM6 Q9HQW2 HIS8
SULSO - Y104 AAT Q97TY7 Q97YX5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
247_S	286_K	3.414	1.00
389_E	464_L	3.223	1.00
437_R	476_E	2.971	1.00
388_K	392_D	2.933	1.00
209_V	230_R	2.847	1.00
407_T	420_T	2.811	1.00
274_E	278_K	2.749	1.00
237_D	276_R	2.618	1.00
197_Q	201_I	2.495	1.00
469_T	473_A	2.457	1.00
208_S	256_Q	2.370	1.00
288_Q	318_N	2.339	1.00
393_A	468_E	2.307	1.00
147_Q	369_E	2.283	1.00
189_V	195_A	2.265	1.00
204_L	229_M	2.265	1.00
175_K	180_H	2.265	1.00
163_N	365_W	2.253	1.00
433_E	436_K	2.242	1.00
469_T	472_K	2.199	1.00
284_S	291_I	2.188	1.00
169_A	372_S	2.173	1.00
171_A	183_P	2.169	1.00
235_P	245_L	2.164	1.00
340_G	345_I	2.126	1.00
463_S	466_D	2.112	1.00
285_K	316_E	2.001	1.00
397_F	472_K	1.950	1.00
396_H	400_R	1.941	1.00
397_F	471_I	1.920	1.00
126_L	470_G	1.910	1.00
164_R	168_E	1.908	1.00
325_F	367_A	1.867	1.00
174_L	339_A	1.852	1.00
247_S	279_E	1.851	1.00
199_I	320_L	1.848	1.00
245_L	248_S	1.844	1.00
242_K	245_L	1.824	1.00
395_V	410_I	1.821	1.00
437_R	473_A	1.819	1.00
165_Q	368_A	1.813	1.00
278_K	282_S	1.807	1.00
257_L	292_I	1.758	1.00
393_A	464_L	1.746	1.00
399_E	408_W	1.743	1.00
395_V	399_E	1.714	1.00
169_A	172_D	1.699	1.00
273_S	276_R	1.697	1.00
292_I	322_L	1.679	1.00
279_E	282_S	1.677	1.00
338_L	348_L	1.676	1.00
245_L	249_N	1.674	1.00
244_G	279_E	1.673	1.00
401_Y	472_K	1.672	1.00
282_S	286_K	1.668	1.00
185_A	342_E	1.659	1.00
243_A	283_L	1.650	1.00
139_D	143_R	1.648	1.00
395_V	417_I	1.648	1.00
360_S	363_S	1.647	1.00
145_F	366_A	1.640	1.00
172_D	372_S	1.639	1.00
394_A	471_I	1.636	1.00
214_K	235_P	1.625	1.00
161_K	349_A	1.621	1.00
386_K	389_E	1.618	1.00
393_A	397_F	1.611	1.00
397_F	468_E	1.610	1.00
427_V	445_Y	1.610	1.00
250_R	283_L	1.594	1.00
192_A	322_L	1.592	1.00
165_Q	372_S	1.583	1.00
296_A	324_A	1.579	1.00
209_V	232_R	1.576	1.00
394_A	417_I	1.570	1.00
395_V	408_W	1.542	1.00
274_E	308_Q	1.536	1.00
243_A	279_E	1.534	1.00
200_S	224_F	1.533	1.00
168_E	172_D	1.533	1.00
168_E	183_P	1.532	1.00
369_E	373_Q	1.532	1.00
303_E	412_A	1.521	1.00
426_P	429_R	1.520	1.00
441_V	455_I	1.517	1.00
142_G	146_Q	1.510	1.00
247_S	251_K	1.508	1.00
181_V	339_A	1.506	1.00
247_S	287_E	1.501	1.00
433_E	477_T	1.498	1.00
429_R	433_E	1.486	1.00
170_V	188_I	1.479	1.00
434_L	474_A	1.476	1.00
161_K	167_R	1.476	1.00
386_K	464_L	1.467	1.00
250_R	289_M	1.460	1.00
397_F	400_R	1.455	1.00
274_E	313_M	1.436	1.00
399_E	410_I	1.434	1.00
284_S	289_M	1.429	1.00
420_T	454_S	1.428	1.00
214_K	233_G	1.427	1.00
169_A	368_A	1.421	1.00
282_S	285_K	1.419	1.00
397_F	475_A	1.412	1.00
224_F	229_M	1.408	1.00
352_K	356_D	1.405	1.00
335_I	367_A	1.398	1.00
211_L	234_L	1.396	1.00
320_L	340_G	1.390	1.00
211_L	255_G	1.379	1.00
429_R	432_Y	1.368	1.00
210_I	224_F	1.359	1.00
309_P	312_A	1.324	1.00
386_K	390_R	1.322	1.00
391_R	395_V	1.316	1.00
209_V	254_G	1.315	1.00
170_V	186_I	1.304	1.00
239_E	276_R	1.303	1.00
466_D	469_T	1.293	1.00
199_I	292_I	1.291	1.00
392_D	396_H	1.274	1.00
418_W	444_G	1.274	1.00
397_F	401_Y	1.270	1.00
400_R	475_A	1.269	1.00
194_Q	356_D	1.266	1.00
206_R	228_G	1.259	1.00
210_I	257_L	1.259	1.00
146_Q	151_G	1.258	1.00
396_H	468_E	1.247	1.00
276_R	279_E	1.244	1.00
182_S	342_E	1.244	1.00
472_K	476_E	1.244	1.00
166_L	188_I	1.241	1.00
144_M	369_E	1.239	1.00
179_I	311_K	1.238	1.00
431_F	441_V	1.230	1.00
200_S	204_L	1.230	1.00
167_R	171_A	1.226	1.00
283_L	287_E	1.225	1.00
275_Q	279_E	1.218	1.00
202_G	351_I	1.218	1.00
369_E	372_S	1.218	1.00
468_E	472_K	1.214	1.00
203_L	257_L	1.212	1.00
184_S	342_E	1.209	1.00
143_R	146_Q	1.206	1.00
211_L	246_V	1.205	1.00
171_A	186_I	1.204	1.00
186_I	339_A	1.202	1.00
328_T	376_Y	1.202	1.00
283_L	289_M	1.200	1.00
464_L	468_E	1.199	1.00
368_A	372_S	1.184	1.00
278_K	313_M	1.183	1.00
143_R	147_Q	1.179	1.00
275_Q	278_K	1.171	1.00
322_L	338_L	1.169	1.00
195_A	322_L	1.162	1.00
239_E	273_S	1.161	1.00
400_R	468_E	1.160	1.00
407_T	422_H	1.159	1.00
170_V	337_W	1.157	1.00
260_T	280_I	1.150	1.00
165_Q	365_W	1.147	1.00
221_L	225_Q	1.144	1.00
401_Y	475_A	1.144	1.00
381_T	385_R	1.143	1.00
237_D	242_K	1.140	1.00
220_S	259_Y	1.139	1.00
347_R	350_D	1.138	1.00
314_D	317_G	1.133	1.00
202_G	348_L	1.133	1.00
241_V	258_L	1.126	1.00
164_R	167_R	1.123	1.00
385_R	388_K	1.119	1.00
154_S	365_W	1.115	1.00
194_Q	352_K	1.114	1.00
251_K	287_E	1.112	1.00
308_Q	313_M	1.109	1.00
164_R	183_P	1.106	1.00
101_S	205_K	1.105	1.00
176_G	377_E	1.102	1.00
139_D	142_G	1.099	1.00
323_G	337_W	1.099	1.00
381_T	384_R	1.096	1.00
394_A	467_L	1.093	1.00
340_G	348_L	1.093	1.00
205_K	208_S	1.091	1.00
185_A	345_I	1.089	1.00
140_T	144_M	1.087	1.00
258_L	289_M	1.086	1.00
135_L	386_K	1.085	1.00
201_I	227_A	1.084	1.00
199_I	348_L	1.083	1.00
428_S	445_Y	1.081	1.00
187_L	345_I	1.080	1.00
301_W	307_P	1.072	1.00
173_H	377_E	1.068	1.00
374_G	378_E	1.064	1.00
162_G	167_R	1.063	1.00
187_L	348_L	1.059	1.00
437_R	477_T	1.057	1.00
138_A	142_G	1.056	1.00
391_R	459_Y	1.053	1.00
291_I	310_L	1.048	1.00
204_L	210_I	1.036	1.00
121_A	438_Q	1.030	1.00
430_F	455_I	1.030	1.00
426_P	452_R	1.028	1.00
439_V	474_A	1.026	1.00
209_V	255_G	1.024	1.00
104_H	107_N	1.021	1.00
320_L	338_L	1.015	1.00
281_I	313_M	1.011	1.00
224_F	231_L	1.008	1.00
352_K	359_S	1.006	1.00
281_I	291_I	1.002	1.00
285_K	315_H	0.999	1.00
345_I	349_A	0.994	1.00
173_H	299_D	0.990	1.00
303_E	391_R	0.986	1.00
144_M	148_I	0.980	1.00
190_S	194_Q	0.975	1.00
131_L	387_L	0.969	1.00
285_K	318_N	0.964	1.00
163_N	368_A	0.963	1.00
401_Y	471_I	0.960	1.00
314_D	318_N	0.958	1.00
234_L	249_N	0.952	1.00
311_K	321_Y	0.951	1.00
213_E	265_H	0.945	1.00
174_L	321_Y	0.944	1.00
393_A	396_H	0.943	1.00
295_D	298_G	0.941	1.00
192_A	324_A	0.940	1.00
122_D	438_Q	0.940	1.00
241_V	276_R	0.940	1.00
234_L	241_V	0.937	1.00
385_R	389_E	0.932	1.00
434_L	441_V	0.929	1.00
439_V	473_A	0.929	1.00
290_P	320_L	0.928	1.00
211_L	249_N	0.927	1.00
301_W	304_E	0.926	1.00
427_V	453_N	0.919	1.00
120_R	438_Q	0.918	1.00
346_E	350_D	0.917	1.00
198_L	348_L	0.917	1.00
290_P	318_N	0.917	1.00
420_T	453_N	0.913	1.00
222_H	225_Q	0.912	1.00
171_A	181_V	0.910	1.00
281_I	319_I	0.909	1.00
430_F	477_T	0.909	1.00
242_K	276_R	0.903	1.00
220_S	224_F	0.903	1.00
126_L	467_L	0.899	1.00
433_E	437_R	0.897	1.00
113_A	116_Q	0.889	1.00
169_A	371_L	0.887	1.00
240_G	276_R	0.885	1.00
197_Q	355_T	0.883	1.00
101_S	104_H	0.881	1.00
394_A	457_L	0.880	1.00
274_E	306_P	0.879	1.00
168_E	372_S	0.875	1.00
396_H	399_E	0.873	1.00
141_I	145_F	0.873	1.00
392_D	410_I	0.873	1.00
281_I	314_D	0.872	1.00
132_S	390_R	0.870	1.00
431_F	443_P	0.870	1.00
405_I	422_H	0.866	1.00
172_D	175_K	0.865	1.00
428_S	432_Y	0.865	1.00
225_Q	231_L	0.862	1.00
419_V	457_L	0.859	1.00
444_G	454_S	0.853	1.00
427_V	443_P	0.851	1.00
325_F	337_W	0.849	1.00
418_W	454_S	0.845	1.00
247_S	283_L	0.844	1.00
173_H	177_K	0.842	1.00
406_A	419_V	0.835	1.00
141_I	148_I	0.835	1.00
236_M	265_H	0.833	1.00
444_G	447_Y	0.831	1.00
434_L	477_T	0.830	1.00
200_S	259_Y	0.828	1.00
148_I	366_A	0.826	1.00
212_T	224_F	0.825	1.00
165_Q	168_E	0.822	1.00
173_H	176_G	0.818	1.00
311_K	314_D	0.814	1.00
329_V	367_A	0.813	1.00
174_L	337_W	0.813	1.00
430_F	434_L	0.811	1.00
182_S	185_A	0.809	1.00
193_L	219_Q	0.808	1.00
250_R	287_E	0.808	1.00
281_I	310_L	0.803	1.00
190_S	360_S	0.801	1.00
244_G	248_S	0.798	1.00
110_I	113_A	0.798	1.00
246_V	283_L	0.788	1.00
195_A	338_L	0.786	1.00
382_W	385_R	0.785	1.00
439_V	470_G	0.785	1.00
391_R	410_I	0.781	1.00
243_A	276_R	0.780	1.00
200_S	227_A	0.776	1.00
473_A	477_T	0.772	1.00
398_L	408_W	0.769	1.00
473_A	476_E	0.769	1.00
255_G	289_M	0.767	1.00
427_V	431_F	0.767	1.00
191_G	334_R	0.766	1.00
211_L	258_L	0.763	1.00
264_F	413_G	0.757	1.00
394_A	397_F	0.757	1.00
425_L	430_F	0.756	1.00
435_L	440_L	0.748	1.00
140_T	143_R	0.747	1.00
142_G	145_F	0.747	1.00
251_K	255_G	0.746	1.00
190_S	359_S	0.735	1.00
177_K	298_G	0.732	1.00
204_L	208_S	0.732	1.00
102_G	105_R	0.732	1.00
246_V	280_I	0.731	1.00
239_E	275_Q	0.731	1.00
258_L	283_L	0.730	1.00
393_A	467_L	0.727	1.00
379_H	383_V	0.726	1.00
309_P	321_Y	0.726	1.00
235_P	242_K	0.723	1.00
176_G	299_D	0.720	1.00
265_H	268_T	0.720	1.00
194_Q	198_L	0.717	1.00
320_L	344_V	0.715	1.00
401_Y	405_I	0.713	1.00
277_R	313_M	0.713	1.00
272_M	277_R	0.712	1.00
469_T	476_E	0.711	1.00
246_V	258_L	0.711	1.00
110_I	114_I	0.708	1.00
382_W	386_K	0.707	1.00
187_L	340_G	0.707	1.00
335_I	359_S	0.705	1.00
342_E	346_E	0.705	1.00
432_Y	435_L	0.705	1.00
188_I	335_I	0.702	1.00
406_A	421_F	0.701	1.00
204_L	257_L	0.701	1.00
427_V	452_R	0.699	1.00
167_R	183_P	0.699	1.00
290_P	344_V	0.696	1.00
171_A	182_S	0.694	1.00
140_T	375_Y	0.692	1.00
145_F	149_N	0.691	1.00
163_N	361_G	0.690	1.00
125_R	440_L	0.689	1.00
383_V	387_L	0.689	1.00
210_I	229_M	0.688	1.00
126_L	457_L	0.686	1.00
142_G	149_N	0.685	1.00
389_E	393_A	0.684	1.00
422_H	453_N	0.683	1.00
465_G	468_E	0.682	1.00
391_R	411_P	0.682	1.00
285_K	314_D	0.681	1.00
378_E	381_T	0.681	1.00
148_I	369_E	0.679	1.00
377_E	381_T	0.678	1.00
173_H	298_G	0.677	1.00
472_K	475_A	0.676	1.00
310_L	319_I	0.675	1.00
158_E	163_N	0.675	1.00
147_Q	373_Q	0.674	1.00
103_I	106_A	0.673	1.00
263_S	295_D	0.673	1.00
397_F	467_L	0.673	1.00
390_R	464_L	0.672	1.00
462_A	466_D	0.672	1.00
195_A	336_G	0.669	1.00
188_I	364_Q	0.667	1.00
303_E	388_K	0.667	1.00
431_F	435_L	0.666	1.00
106_A	109_S	0.660	1.00
181_V	185_A	0.659	1.00
145_F	148_I	0.658	1.00
401_Y	468_E	0.658	1.00
203_L	290_P	0.657	1.00
105_R	108_S	0.656	1.00
149_N	369_E	0.654	1.00
196_L	223_V	0.652	1.00
421_F	455_I	0.651	1.00
244_G	247_S	0.650	1.00
209_V	253_Y	0.648	1.00
213_E	241_V	0.648	1.00
258_L	291_I	0.648	1.00
163_N	364_Q	0.647	1.00
158_E	361_G	0.647	1.00
200_S	257_L	0.646	1.00
124_I	462_A	0.646	1.00
432_Y	436_K	0.646	1.00
258_L	284_S	0.645	1.00
301_W	306_P	0.645	1.00
124_I	473_A	0.645	1.00
250_R	284_S	0.645	1.00
316_E	319_I	0.643	1.00
192_A	296_A	0.641	1.00
102_G	106_A	0.641	1.00
198_L	352_K	0.639	1.00
201_I	355_T	0.638	1.00
365_W	369_E	0.635	1.00
314_D	319_I	0.635	1.00
241_V	272_M	0.633	1.00
241_V	246_V	0.632	1.00
158_E	358_G	0.631	1.00
308_Q	312_A	0.631	1.00
212_T	231_L	0.627	1.00
189_V	336_G	0.627	1.00
129_G	416_Y	0.626	1.00
196_L	292_I	0.625	1.00
311_K	319_I	0.624	1.00
274_E	312_A	0.619	1.00
243_A	280_I	0.618	1.00
103_I	107_N	0.616	1.00
427_V	455_I	0.614	1.00
123_I	438_Q	0.612	1.00
398_L	419_V	0.611	1.00
293_E	310_L	0.608	1.00
302_F	459_Y	0.606	1.00
379_H	382_W	0.606	1.00
243_A	247_S	0.605	1.00
107_N	110_I	0.603	1.00
187_L	349_A	0.603	1.00
109_S	112_Q	0.601	1.00
389_E	392_D	0.600	1.00
104_H	108_S	0.600	1.00
327_K	334_R	0.599	1.00
209_V	251_K	0.598	1.00
281_I	315_H	0.598	1.00
303_E	410_I	0.597	1.00
238_D	407_T	0.596	1.00
188_I	359_S	0.596	1.00
237_D	245_L	0.594	1.00
441_V	457_L	0.593	1.00
144_M	366_A	0.592	1.00
200_S	229_M	0.590	1.00
420_T	452_R	0.590	1.00
144_M	147_Q	0.586	1.00
236_M	270_T	0.585	1.00
272_M	276_R	0.584	1.00
363_S	366_A	0.582	1.00
238_D	409_R	0.581	1.00
212_T	233_G	0.581	1.00
335_I	363_S	0.580	1.00
232_R	249_N	0.578	1.00
378_E	382_W	0.578	1.00
108_S	112_Q	0.576	1.00
170_V	325_F	0.574	1.00
248_S	251_K	0.573	1.00
212_T	221_L	0.573	1.00
431_F	455_I	0.572	1.00
263_S	271_V	0.572	1.00
341_P	344_V	0.572	1.00
384_R	388_K	0.572	1.00
272_M	280_I	0.571	1.00
107_N	111_I	0.571	1.00
326_S	334_R	0.570	1.00
199_I	322_L	0.567	1.00
197_Q	227_A	0.567	1.00
122_D	466_D	0.565	1.00
146_Q	149_N	0.565	1.00
346_E	349_A	0.565	1.00
394_A	459_Y	0.565	1.00
157_Y	327_K	0.565	1.00
365_W	368_A	0.564	1.00
264_F	301_W	0.564	1.00
375_Y	378_E	0.562	1.00
297_Y	416_Y	0.562	1.00
193_L	217_Y	0.560	1.00
216_S	221_L	0.560	1.00
198_L	351_I	0.557	1.00
263_S	277_R	0.557	1.00
343_P	346_E	0.557	1.00
113_A	432_Y	0.556	1.00
249_N	253_Y	0.555	1.00
445_Y	452_R	0.553	1.00
293_E	321_Y	0.552	1.00
221_L	233_G	0.551	1.00
405_I	408_W	0.549	1.00
137_P	140_T	0.548	1.00
260_T	272_M	0.547	1.00
366_A	369_E	0.547	1.00
179_I	309_P	0.547	1.00
398_L	406_A	0.547	1.00
421_F	427_V	0.546	1.00
166_L	170_V	0.546	1.00
199_I	257_L	0.546	1.00
181_V	311_K	0.545	1.00
425_L	433_E	0.545	1.00
279_E	283_L	0.544	1.00
201_I	351_I	0.543	1.00
340_G	344_V	0.543	1.00
295_D	321_Y	0.543	1.00
409_R	420_T	0.541	1.00
144_M	375_Y	0.541	1.00
191_G	336_G	0.541	1.00
380_L	384_R	0.540	1.00
124_I	469_T	0.540	1.00
427_V	430_F	0.539	1.00
100_R	103_I	0.539	1.00
387_L	460_S	0.537	1.00
289_M	318_N	0.537	1.00
280_I	310_L	0.536	1.00
264_F	297_Y	0.534	1.00
362_L	366_A	0.533	1.00
140_T	145_F	0.533	1.00
408_W	417_I	0.532	1.00
359_S	363_S	0.531	1.00
150_P	153_L	0.530	1.00
102_G	107_N	0.529	1.00
167_R	184_S	0.528	1.00
361_G	365_W	0.527	1.00
264_F	271_V	0.526	1.00
197_Q	223_V	0.526	1.00
168_E	171_A	0.525	1.00
344_V	348_L	0.524	0.99
209_V	256_Q	0.524	0.99
281_I	316_E	0.522	0.99
193_L	223_V	0.521	0.99
338_L	345_I	0.519	0.99
111_I	115_N	0.519	0.99
420_T	423_K	0.518	0.99
204_L	256_Q	0.516	0.99
398_L	471_I	0.516	0.99
145_F	362_L	0.515	0.99
418_W	456_R	0.513	0.99
373_Q	377_E	0.513	0.99
200_S	223_V	0.512	0.99
299_D	328_T	0.512	0.99
217_Y	294_D	0.511	0.99
439_V	477_T	0.511	0.99
112_Q	115_N	0.511	0.99
127_G	440_L	0.510	0.99
250_R	255_G	0.507	0.99
407_T	423_K	0.507	0.99
284_S	287_E	0.507	0.99
142_G	148_I	0.506	0.99
398_L	457_L	0.503	0.99
144_M	370_W	0.503	0.99
124_I	470_G	0.502	0.99
106_A	110_I	0.502	0.99
298_G	323_G	0.501	0.99
302_F	388_K	0.501	0.99
232_R	255_G	0.501	0.99
216_S	236_M	0.500	0.99
171_A	175_K	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4tv7A	2	0.9339	100	0.316	Contact Map
3pplA	2	0.7996	100	0.404	Contact Map
3f6tA	2	0.8802	100	0.419	Contact Map
3qguA	2	0.7955	100	0.434	Contact Map
3ez1A	2	0.781	100	0.442	Contact Map
2r2nA	2	0.8058	100	0.45	Contact Map
4je5A	2	0.8202	100	0.45	Contact Map
1vp4A	2	0.8285	100	0.457	Contact Map
2x5fA	2	0.8244	100	0.461	Contact Map
3d6kA	2	0.7851	100	0.463	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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