YTFP - BACSU - GREMLIN Contacts

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YTFP - Uncharacterized protein YtfP

UniProt:	Q795R8	Sequences: MKQYDVIVIGGGPSGLMAAIAAGEQGAGVLLIDKGNKLGRKLAISGGGRCNVTNRLPVEEIIKHIPGNGRFLYSAFSEFNNEDIIKFFENLGIQLKEEDHGRMFPVTDKAQSVVDALLNRLKQLRVTIRTNEKIKSVLYEDGQAAGIVTNNGEMIHSQAVIIAVGGKSVPHTGSTGDGYEWAEAAGHTITELFPTEVPVTSGEPFIKQKTLQGLSLRDVAVSVLNKKGKPIITHKMDMLFTHFGLSGPAILRCSQFVVKELKKQPQVPIRIDLYPDINEETLFQKMYKELKEAPKKTIKNVLKPWMQERYLLFLLEKNGISPNVSFSELPKDPFRQFVRDCKQFTVLANGTLSLDKAFVTGGGVSVKEIDPKKMASKKMEGLYFCGEILDIHGYTGGYNITSALVTGRLAGLNAGQYARS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	420 (388)
Sequences:	3782 (2824)
Seq/√Len:	143.4

ECOLI - YHIN
BACSU - YTFP

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
272_D	342_K	4.814	1.00
369_I	389_L	3.716	1.00
187_H	376_S	3.515	1.00
80_N	83_D	3.397	1.00
368_E	378_K	3.302	1.00
324_V	333_P	3.153	1.00
11_G	38_L	3.082	1.00
5_D	158_Q	2.919	1.00
162_I	388_I	2.823	1.00
407_G	411_G	2.779	1.00
18_A	161_I	2.759	1.00
370_D	375_A	2.699	1.00
30_L	129_R	2.610	1.00
221_V	250_I	2.598	1.00
188_T	368_E	2.567	1.00
178_G	388_I	2.530	1.00
270_R	343_Q	2.513	1.00
235_K	276_D	2.498	1.00
161_I	414_A	2.478	1.00
5_D	28_G	2.430	1.00
268_P	345_T	2.409	1.00
7_I	155_I	2.338	1.00
220_A	233_T	2.333	1.00
187_H	378_K	2.280	1.00
93_I	116_A	2.278	1.00
43_A	114_V	2.205	1.00
364_V	384_F	2.174	1.00
145_A	379_M	2.047	1.00
220_A	235_K	2.027	1.00
52_V	95_L	2.019	1.00
408_R	412_L	2.009	1.00
7_I	32_I	2.007	1.00
7_I	157_S	1.995	1.00
188_T	365_S	1.992	1.00
86_K	90_N	1.982	1.00
120_R	123_Q	1.975	1.00
278_N	281_T	1.943	1.00
16_L	121_L	1.886	1.00
4_Y	30_L	1.884	1.00
38_L	128_I	1.882	1.00
84_I	88_F	1.879	1.00
14_S	385_C	1.844	1.00
136_S	184_A	1.826	1.00
34_K	133_K	1.801	1.00
85_I	95_L	1.773	1.00
84_I	404_L	1.769	1.00
21_A	24_E	1.751	1.00
93_I	113_V	1.744	1.00
195_T	361_G	1.729	1.00
149_T	155_I	1.727	1.00
111_Q	115_D	1.727	1.00
22_A	411_G	1.722	1.00
352_L	356_K	1.720	1.00
21_A	411_G	1.718	1.00
325_S	328_E	1.686	1.00
245_L	250_I	1.671	1.00
219_V	238_M	1.668	1.00
120_R	124_L	1.661	1.00
138_L	146_G	1.659	1.00
295_K	327_S	1.657	1.00
108_D	112_S	1.648	1.00
7_I	147_I	1.646	1.00
222_S	233_T	1.643	1.00
200_T	350_G	1.643	1.00
23_G	124_L	1.642	1.00
32_I	155_I	1.636	1.00
97_E	103_M	1.616	1.00
163_A	385_C	1.614	1.00
96_K	108_D	1.576	1.00
179_Y	360_T	1.573	1.00
83_D	86_K	1.568	1.00
193_F	361_G	1.568	1.00
24_E	120_R	1.561	1.00
78_E	409_L	1.559	1.00
121_L	126_V	1.547	1.00
190_T	365_S	1.546	1.00
375_A	380_E	1.545	1.00
239_L	246_S	1.543	1.00
52_V	88_F	1.538	1.00
21_A	412_L	1.523	1.00
178_G	182_A	1.523	1.00
401_T	405_V	1.521	1.00
89_E	95_L	1.507	1.00
28_G	127_T	1.490	1.00
180_E	183_E	1.488	1.00
137_V	160_V	1.478	1.00
38_L	130_T	1.474	1.00
162_I	384_F	1.469	1.00
27_A	414_A	1.466	1.00
411_G	414_A	1.462	1.00
36_N	131_N	1.462	1.00
23_G	126_V	1.461	1.00
157_S	160_V	1.442	1.00
270_R	345_T	1.441	1.00
339_R	343_Q	1.439	1.00
170_P	355_D	1.439	1.00
384_F	388_I	1.438	1.00
166_G	360_T	1.420	1.00
129_R	155_I	1.414	1.00
91_L	120_R	1.413	1.00
149_T	152_G	1.408	1.00
283_F	335_R	1.400	1.00
277_I	285_K	1.392	1.00
39_G	114_V	1.387	1.00
38_L	118_L	1.377	1.00
73_Y	77_S	1.373	1.00
40_R	43_A	1.358	1.00
7_I	30_L	1.357	1.00
20_I	120_R	1.337	1.00
136_S	148_V	1.334	1.00
5_D	30_L	1.332	1.00
13_P	42_L	1.331	1.00
82_E	86_K	1.329	1.00
394_Y	398_Y	1.322	1.00
200_T	352_L	1.321	1.00
71_F	366_V	1.319	1.00
56_L	398_Y	1.312	1.00
78_E	412_L	1.310	1.00
16_L	118_L	1.309	1.00
133_K	150_N	1.306	1.00
199_V	348_A	1.302	1.00
81_N	405_V	1.287	1.00
85_I	103_M	1.276	1.00
36_N	40_R	1.274	1.00
75_A	409_L	1.270	1.00
176_G	180_E	1.265	1.00
110_A	114_V	1.262	1.00
118_L	122_K	1.255	1.00
297_T	300_N	1.252	1.00
24_E	124_L	1.249	1.00
16_L	38_L	1.237	1.00
273_L	344_F	1.232	1.00
115_D	118_L	1.225	1.00
177_D	181_W	1.204	1.00
268_P	347_L	1.203	1.00
6_V	159_A	1.203	1.00
162_I	182_A	1.200	1.00
203_E	347_L	1.200	1.00
219_V	249_A	1.199	1.00
17_M	407_G	1.191	1.00
9_I	162_I	1.189	1.00
96_K	107_T	1.179	1.00
221_V	271_I	1.175	1.00
132_E	149_T	1.160	1.00
107_T	112_S	1.156	1.00
171_H	355_D	1.153	0.99
195_T	392_H	1.150	0.99
139_Y	143_Q	1.146	0.99
245_L	346_V	1.146	0.99
409_L	413_N	1.139	0.99
94_Q	106_V	1.139	0.99
21_A	408_R	1.137	0.99
94_Q	112_S	1.137	0.99
30_L	127_T	1.135	0.99
137_V	181_W	1.127	0.99
374_M	410_A	1.127	0.99
195_T	255_Q	1.126	0.99
201_S	346_V	1.121	0.99
21_A	407_G	1.116	0.99
199_V	351_T	1.116	0.99
185_A	379_M	1.115	0.99
6_V	161_I	1.115	0.99
60_E	63_K	1.113	0.99
369_I	384_F	1.112	0.99
89_E	94_Q	1.112	0.99
49_R	98_E	1.110	0.99
159_A	414_A	1.109	0.99
52_V	113_V	1.108	0.99
88_F	113_V	1.106	0.99
400_I	404_L	1.099	0.99
53_T	103_M	1.096	0.99
241_T	246_S	1.095	0.99
245_L	269_I	1.093	0.99
20_I	124_L	1.089	0.99
139_Y	185_A	1.089	0.99
238_M	245_L	1.088	0.99
255_Q	392_H	1.073	0.99
139_Y	379_M	1.072	0.99
223_V	267_V	1.071	0.99
146_G	153_E	1.066	0.99
243_F	352_L	1.064	0.99
330_P	333_P	1.059	0.99
279_E	339_R	1.055	0.99
205_F	344_F	1.051	0.99
293_A	304_P	1.048	0.99
135_K	148_V	1.040	0.99
84_I	401_T	1.036	0.99
364_V	388_I	1.036	0.99
11_G	128_I	1.031	0.99
86_K	89_E	1.029	0.99
232_I	253_C	1.024	0.99
221_V	269_I	1.022	0.99
250_I	269_I	1.020	0.99
32_I	129_R	1.019	0.99
168_S	360_T	1.017	0.99
13_P	400_I	1.014	0.99
72_L	406_T	1.008	0.99
39_G	42_L	1.005	0.99
210_T	313_F	1.004	0.99
6_V	22_A	0.995	0.98
35_G	40_R	0.990	0.98
183_E	191_E	0.988	0.98
43_A	111_Q	0.987	0.98
402_S	406_T	0.986	0.98
283_F	287_Y	0.985	0.98
32_I	157_S	0.981	0.98
202_G	349_N	0.981	0.98
391_I	402_S	0.978	0.98
45_S	400_I	0.977	0.98
336_Q	339_R	0.976	0.98
121_L	128_I	0.973	0.98
71_F	371_P	0.963	0.98
79_F	84_I	0.961	0.98
6_V	27_A	0.960	0.98
138_L	148_V	0.958	0.98
389_L	406_T	0.955	0.98
333_P	336_Q	0.950	0.98
18_A	385_C	0.949	0.98
4_Y	158_Q	0.948	0.98
19_A	31_L	0.947	0.98
26_G	29_V	0.946	0.98
313_F	317_K	0.945	0.98
16_L	39_G	0.944	0.98
91_L	116_A	0.943	0.98
17_M	21_A	0.938	0.98
410_A	414_A	0.937	0.98
222_S	270_R	0.937	0.98
187_H	368_E	0.935	0.98
217_R	237_D	0.930	0.98
205_F	317_K	0.930	0.98
234_H	252_R	0.929	0.98
75_A	374_M	0.927	0.98
159_A	383_Y	0.925	0.98
132_E	155_I	0.925	0.98
286_M	338_V	0.924	0.98
215_S	239_L	0.923	0.98
182_A	384_F	0.923	0.98
280_E	284_Q	0.922	0.98
279_E	343_Q	0.918	0.97
5_D	27_A	0.917	0.97
87_F	91_L	0.915	0.97
30_L	158_Q	0.913	0.97
115_D	119_N	0.911	0.97
137_V	185_A	0.906	0.97
42_L	45_S	0.904	0.97
216_L	219_V	0.902	0.97
70_R	73_Y	0.900	0.97
192_L	360_T	0.900	0.97
88_F	95_L	0.897	0.97
391_I	406_T	0.896	0.97
135_K	150_N	0.896	0.97
4_Y	7_I	0.894	0.97
13_P	404_L	0.891	0.97
366_V	389_L	0.890	0.97
88_F	117_L	0.889	0.97
17_M	411_G	0.888	0.97
76_F	80_N	0.886	0.97
87_F	120_R	0.886	0.97
118_L	128_I	0.885	0.97
66_P	391_I	0.884	0.97
200_T	349_N	0.882	0.97
119_N	122_K	0.881	0.97
20_I	24_E	0.879	0.97
383_Y	413_N	0.873	0.97
4_Y	127_T	0.872	0.97
306_M	341_C	0.871	0.97
385_C	407_G	0.870	0.96
161_I	385_C	0.869	0.96
375_A	381_G	0.867	0.96
197_V	351_T	0.864	0.96
179_Y	192_L	0.863	0.96
211_L	310_Y	0.863	0.96
266_Q	347_L	0.862	0.96
335_R	339_R	0.860	0.96
68_N	366_V	0.858	0.96
31_L	121_L	0.858	0.96
55_R	97_E	0.851	0.96
167_K	354_L	0.844	0.96
162_I	181_W	0.840	0.96
224_L	270_R	0.838	0.96
199_V	250_I	0.837	0.96
53_T	401_T	0.837	0.96
85_I	89_E	0.836	0.96
405_V	408_R	0.836	0.96
216_L	238_M	0.831	0.95
140_E	146_G	0.830	0.95
34_K	177_D	0.827	0.95
365_S	368_E	0.825	0.95
6_V	414_A	0.825	0.95
32_I	132_E	0.825	0.95
283_F	334_F	0.824	0.95
225_N	267_V	0.823	0.95
25_Q	412_L	0.822	0.95
129_R	151_N	0.821	0.95
167_K	192_L	0.820	0.95
283_F	286_M	0.819	0.95
296_K	304_P	0.817	0.95
141_D	144_A	0.815	0.95
300_N	303_K	0.812	0.95
274_Y	341_C	0.807	0.95
11_G	33_D	0.806	0.95
31_L	126_V	0.806	0.95
368_E	376_S	0.804	0.95
369_I	374_M	0.802	0.94
31_L	38_L	0.802	0.94
215_S	237_D	0.801	0.94
298_I	320_I	0.801	0.94
139_Y	144_A	0.801	0.94
282_L	338_V	0.798	0.94
376_S	382_L	0.797	0.94
19_A	126_V	0.790	0.94
129_R	153_E	0.786	0.94
286_M	334_F	0.785	0.94
187_H	379_M	0.783	0.94
33_D	130_T	0.783	0.94
52_V	103_M	0.782	0.94
282_L	306_M	0.782	0.94
160_V	381_G	0.779	0.94
212_Q	242_H	0.776	0.93
100_H	236_M	0.773	0.93
223_V	253_C	0.772	0.93
119_N	123_Q	0.771	0.93
216_L	310_Y	0.770	0.93
8_V	18_A	0.764	0.93
66_P	72_L	0.764	0.93
135_K	153_E	0.761	0.93
376_S	384_F	0.759	0.93
318_N	340_D	0.759	0.93
215_S	248_P	0.759	0.93
148_V	153_E	0.759	0.93
49_R	108_D	0.757	0.93
98_E	102_R	0.756	0.93
298_I	315_L	0.755	0.93
40_R	171_H	0.754	0.92
324_V	328_E	0.754	0.92
297_T	325_S	0.753	0.92
114_V	118_L	0.753	0.92
145_A	185_A	0.753	0.92
379_M	382_L	0.751	0.92
144_A	156_H	0.746	0.92
18_A	411_G	0.742	0.92
24_E	90_N	0.741	0.92
358_F	395_T	0.741	0.92
27_A	159_A	0.739	0.92
58_V	81_N	0.737	0.92
72_L	402_S	0.737	0.92
9_I	134_I	0.737	0.92
223_V	257_V	0.734	0.91
50_C	88_F	0.732	0.91
178_G	364_V	0.732	0.91
16_L	31_L	0.731	0.91
239_L	248_P	0.731	0.91
285_K	288_K	0.731	0.91
20_I	87_F	0.727	0.91
8_V	29_V	0.727	0.91
317_K	340_D	0.723	0.91
68_N	71_F	0.722	0.91
234_H	249_A	0.720	0.91
28_G	158_Q	0.720	0.91
30_L	155_I	0.718	0.91
214_L	307_Q	0.717	0.90
22_A	29_V	0.715	0.90
217_R	235_K	0.715	0.90
99_D	237_D	0.714	0.90
199_V	257_V	0.712	0.90
27_A	411_G	0.711	0.90
192_L	354_L	0.711	0.90
4_Y	28_G	0.711	0.90
189_I	192_L	0.708	0.90
129_R	132_E	0.707	0.90
32_I	147_I	0.703	0.90
29_V	126_V	0.702	0.90
188_T	376_S	0.701	0.89
198_P	243_F	0.701	0.89
353_S	356_K	0.697	0.89
314_L	318_N	0.696	0.89
336_Q	340_D	0.695	0.89
9_I	388_I	0.693	0.89
340_D	345_T	0.693	0.89
93_I	107_T	0.690	0.89
375_A	383_Y	0.690	0.89
18_A	407_G	0.690	0.89
37_K	114_V	0.690	0.89
269_I	348_A	0.689	0.89
210_T	316_E	0.688	0.89
72_L	75_A	0.687	0.89
240_F	311_L	0.686	0.88
224_L	267_V	0.685	0.88
292_E	304_P	0.683	0.88
255_Q	361_G	0.682	0.88
298_I	329_L	0.681	0.88
272_D	275_P	0.679	0.88
406_T	410_A	0.679	0.88
75_A	373_K	0.678	0.88
221_V	253_C	0.678	0.88
17_M	408_R	0.677	0.88
221_V	249_A	0.677	0.88
283_F	338_V	0.677	0.88
315_L	318_N	0.676	0.88
277_I	281_T	0.675	0.88
370_D	377_K	0.675	0.88
6_V	158_Q	0.674	0.88
132_E	152_G	0.673	0.87
132_E	151_N	0.673	0.87
137_V	144_A	0.671	0.87
370_D	373_K	0.669	0.87
197_V	357_A	0.667	0.87
279_E	283_F	0.667	0.87
88_F	93_I	0.666	0.87
22_A	414_A	0.666	0.87
23_G	26_G	0.665	0.87
17_M	79_F	0.664	0.87
121_L	125_R	0.663	0.87
169_V	172_T	0.658	0.86
292_E	301_V	0.657	0.86
21_A	25_Q	0.657	0.86
19_A	121_L	0.653	0.86
385_C	389_L	0.653	0.86
299_K	308_E	0.651	0.86
302_L	337_F	0.649	0.86
198_P	352_L	0.648	0.85
200_T	243_F	0.646	0.85
33_D	128_I	0.646	0.85
78_E	408_R	0.645	0.85
274_Y	306_M	0.643	0.85
52_V	93_I	0.642	0.85
296_K	301_V	0.642	0.85
59_E	73_Y	0.639	0.85
401_T	404_L	0.637	0.84
181_W	184_A	0.637	0.84
32_I	149_T	0.636	0.84
176_G	360_T	0.635	0.84
202_G	205_F	0.635	0.84
50_C	113_V	0.634	0.84
294_P	301_V	0.633	0.84
278_N	284_Q	0.633	0.84
135_K	146_G	0.632	0.84
10_G	15_G	0.632	0.84
4_Y	159_A	0.631	0.84
207_K	240_F	0.630	0.84
90_N	123_Q	0.630	0.84
405_V	409_L	0.629	0.84
139_Y	145_A	0.629	0.84
338_V	342_K	0.628	0.84
57_P	60_E	0.625	0.83
249_A	253_C	0.623	0.83
298_I	318_N	0.622	0.83
34_K	175_T	0.621	0.83
58_V	77_S	0.620	0.83
12_G	15_G	0.619	0.83
275_P	342_K	0.618	0.83
271_I	346_V	0.616	0.82
311_L	315_L	0.616	0.82
281_T	284_Q	0.612	0.82
201_S	348_A	0.612	0.82
301_V	326_F	0.612	0.82
31_L	124_L	0.610	0.82
240_F	273_L	0.608	0.82
331_K	334_F	0.607	0.82
176_G	179_Y	0.607	0.82
71_F	75_A	0.606	0.81
100_H	237_D	0.606	0.81
44_I	172_T	0.604	0.81
179_Y	182_A	0.602	0.81
207_K	210_T	0.600	0.81
188_T	378_K	0.599	0.81
220_A	272_D	0.597	0.80
385_C	410_A	0.595	0.80
140_E	145_A	0.595	0.80
166_G	174_S	0.594	0.80
318_N	337_F	0.594	0.80
235_K	249_A	0.593	0.80
293_A	296_K	0.592	0.80
216_L	273_L	0.591	0.80
9_I	177_D	0.590	0.80
75_A	405_V	0.585	0.79
27_A	158_Q	0.585	0.79
94_Q	108_D	0.585	0.79
78_E	413_N	0.585	0.79
222_S	343_Q	0.583	0.79
44_I	47_G	0.581	0.79
314_L	317_K	0.580	0.79
18_A	414_A	0.580	0.79
58_V	63_K	0.579	0.78
308_E	312_L	0.579	0.78
9_I	164_V	0.577	0.78
197_V	353_S	0.575	0.78
30_L	157_S	0.575	0.78
44_I	171_H	0.575	0.78
137_V	145_A	0.574	0.78
140_E	144_A	0.572	0.78
63_K	69_G	0.572	0.78
288_K	292_E	0.570	0.77
277_I	282_L	0.570	0.77
91_L	123_Q	0.569	0.77
224_L	268_P	0.569	0.77
199_V	254_S	0.569	0.77
136_S	139_Y	0.569	0.77
17_M	87_F	0.569	0.77
202_G	347_L	0.569	0.77
56_L	101_G	0.568	0.77
179_Y	189_I	0.568	0.77
20_I	411_G	0.568	0.77
99_D	236_M	0.567	0.77
111_Q	114_V	0.564	0.77
293_A	301_V	0.563	0.77
313_F	316_E	0.563	0.77
215_S	242_H	0.563	0.77
76_F	83_D	0.562	0.76
239_L	251_L	0.561	0.76
47_G	50_C	0.559	0.76
282_L	342_K	0.558	0.76
71_F	74_S	0.555	0.76
306_M	311_L	0.555	0.76
146_G	156_H	0.555	0.76
367_K	377_K	0.554	0.75
79_F	87_F	0.553	0.75
8_V	414_A	0.551	0.75
329_L	334_F	0.548	0.75
359_V	393_G	0.547	0.74
197_V	350_G	0.545	0.74
57_P	64_H	0.545	0.74
374_M	406_T	0.545	0.74
11_G	39_G	0.544	0.74
20_I	121_L	0.544	0.74
281_T	285_K	0.544	0.74
22_A	407_G	0.543	0.74
104_F	248_P	0.541	0.74
221_V	238_M	0.540	0.74
5_D	157_S	0.539	0.73
35_G	39_G	0.539	0.73
205_F	346_V	0.538	0.73
70_R	74_S	0.537	0.73
40_R	114_V	0.535	0.73
37_K	43_A	0.534	0.73
94_Q	107_T	0.534	0.73
98_E	108_D	0.533	0.73
173_G	176_G	0.533	0.73
310_Y	313_F	0.532	0.72
187_H	369_I	0.531	0.72
7_I	145_A	0.530	0.72
96_K	106_V	0.530	0.72
279_E	342_K	0.530	0.72
301_V	305_W	0.527	0.72
57_P	82_E	0.524	0.71
393_G	402_S	0.522	0.71
214_L	309_R	0.522	0.71
211_L	214_L	0.522	0.71
180_E	184_A	0.521	0.71
74_S	371_P	0.521	0.71
55_R	82_E	0.520	0.71
16_L	20_I	0.520	0.71
159_A	381_G	0.519	0.71
331_K	335_R	0.519	0.71
238_M	249_A	0.518	0.70
134_I	137_V	0.518	0.70
134_I	147_I	0.518	0.70
373_K	409_L	0.516	0.70
27_A	410_A	0.515	0.70
302_L	311_L	0.514	0.70
66_P	394_Y	0.514	0.70
172_T	175_T	0.514	0.70
239_L	242_H	0.513	0.70
314_L	340_D	0.511	0.69
31_L	128_I	0.511	0.69
207_K	314_L	0.510	0.69
172_T	176_G	0.510	0.69
242_H	248_P	0.509	0.69
310_Y	318_N	0.508	0.69
162_I	178_G	0.508	0.69
143_Q	146_G	0.507	0.69
299_K	312_L	0.507	0.69
272_D	276_D	0.507	0.69
139_Y	380_E	0.507	0.69
178_G	181_W	0.506	0.69
35_G	172_T	0.506	0.69
55_R	81_N	0.505	0.69
109_K	112_S	0.504	0.68
198_P	251_L	0.503	0.68
64_H	394_Y	0.503	0.68
140_E	156_H	0.502	0.68
66_P	195_T	0.500	0.68

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3v76A	2	0.9214	100	0.381	Contact Map
2i0zA	1	0.981	100	0.403	Contact Map
4cnkA	2	0.931	100	0.445	Contact Map
2gqfA	4	0.9452	100	0.508	Contact Map
3nlcA	1	0.9262	100	0.7	Contact Map
3cesA	2	0.7857	100	0.702	Contact Map
4at0A	2	0.9071	100	0.737	Contact Map
1jnrA	2	0.9119	100	0.755	Contact Map
2wdqA	1	0.8405	100	0.757	Contact Map
3cp8A	2	0.8333	100	0.769	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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