YTCQ - BACSU - GREMLIN Contacts

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YTCQ - Putative ABC transporter peptide-binding protein YtcQ

UniProt:	Q795R2	Sequences: MGNKWRVLLIVLVLALGGVLAGCKGTDQSSAEGKAGPDSKVKLSWMAILYHQQPPKDRAIKEIEKLTNTELDITWVPDAVKEDRLNAALAAGNLPQIVTIQDIKNSSVMNAFRSGMFWEIGDYIKDYPNLNKMNKLINKNVTIDGKLYGIYRERPLSRQGIVIRKDWLDNLNLKTPKTLDELYEVAKAFTEDDPDKDGKDDTFGLADRNDLIYGAFKTIGSYEGMPTDWKESGGKFTPDFMTQEYKDTMNYMKKLRDNGYMNKDFPVTSKTQQQELFSQGKAGIYIGNMVDAVNLRDHASDKSMKLEIINRIKGPDGKERVWASGGHNGVFAFPKTSVKTEAELKRILAFFDRIAEEDVYSLMTYGIDGVHYNKGEDKTFTRKESQVKDWQTDIQPLSALIAIDKAYLKNTGDPLRTAYEELTEDNEKIIVSNPAESLYSASESERGDELKKIIDDATYKYMIGDITESQFDKEVEKWESSGGKQIIQEYEEAFKQAK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	498 (397)
Sequences:	24259 (19773)
Seq/√Len:	992.4

ECOLI - YCJN UGPB MALE YNJB YDCS POTF POTD
BACSU - YTCQ LIPO CYCB YESO ARAN YURO MDXE MSME
HALSA - Q9HHQ8 Q9HP00 Q9HR87 Q9HNZ3
SULSO - Q97YY1 Q97UF5 Q97UZ1 Q97ZC3 Q97VC2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
42_K	72_D	4.064	1.00
253_K	257_D	3.562	1.00
414_P	417_T	3.487	1.00
166_D	305_K	3.372	1.00
246_K	416_R	3.086	1.00
42_K	70_E	3.016	1.00
250_N	254_K	2.907	1.00
119_E	146_K	2.877	1.00
67_T	349_A	2.843	1.00
165_K	307_E	2.839	1.00
44_S	72_D	2.837	1.00
187_K	258_N	2.794	1.00
183_Y	254_K	2.769	1.00
165_K	169_D	2.723	1.00
118_W	340_T	2.644	1.00
57_D	61_K	2.604	1.00
254_K	258_N	2.582	1.00
178_T	181_E	2.520	1.00
163_I	307_E	2.518	1.00
62_E	65_K	2.464	1.00
416_R	420_E	2.439	1.00
69_T	346_R	2.384	1.00
63_I	349_A	2.381	1.00
80_V	83_D	2.374	1.00
64_E	70_E	2.372	1.00
420_E	424_E	2.337	1.00
142_T	147_L	2.289	1.00
349_A	352_D	2.264	1.00
339_K	346_R	2.259	1.00
135_K	139_K	2.250	1.00
243_Q	247_D	2.232	1.00
187_K	191_E	2.224	1.00
61_K	65_K	2.215	1.00
184_E	188_A	2.214	1.00
168_L	284_I	2.205	1.00
40_K	70_E	2.184	1.00
121_G	146_K	2.175	1.00
166_D	170_N	2.132	1.00
174_K	177_K	2.082	1.00
181_E	184_E	2.080	1.00
58_R	61_K	2.076	1.00
356_E	359_V	2.058	1.00
46_M	88_A	2.047	1.00
173_L	185_V	2.042	1.00
44_S	74_T	2.038	1.00
241_M	420_E	2.031	1.00
413_D	421_E	2.000	1.00
188_A	192_D	1.960	1.00
423_T	427_E	1.945	1.00
15_A	18_G	1.919	1.00
62_E	66_L	1.882	1.00
231_E	235_K	1.877	1.00
247_D	250_N	1.856	1.00
184_E	187_K	1.811	1.00
417_T	421_E	1.801	1.00
269_S	272_Q	1.801	1.00
62_E	353_R	1.798	1.00
139_K	142_T	1.797	1.00
64_E	67_T	1.786	1.00
123_Y	348_L	1.748	1.00
117_F	332_A	1.735	1.00
180_D	183_Y	1.719	1.00
16_L	19_V	1.709	1.00
250_N	415_L	1.696	1.00
41_V	346_R	1.684	1.00
98_V	334_P	1.666	1.00
183_Y	258_N	1.655	1.00
60_I	350_F	1.649	1.00
149_G	330_V	1.608	1.00
141_V	330_V	1.604	1.00
163_I	309_I	1.602	1.00
119_E	122_D	1.593	1.00
60_I	64_E	1.593	1.00
61_K	64_E	1.585	1.00
361_S	365_Y	1.580	1.00
424_E	428_K	1.577	1.00
183_Y	187_K	1.575	1.00
183_Y	255_L	1.569	1.00
206_A	282_A	1.549	1.00
337_S	340_T	1.541	1.00
190_T	204_G	1.524	1.00
63_I	67_T	1.519	1.00
187_K	260_Y	1.505	1.00
189_F	283_G	1.498	1.00
161_I	309_I	1.497	1.00
417_T	420_E	1.494	1.00
167_W	189_F	1.486	1.00
40_K	68_N	1.470	1.00
246_K	250_N	1.468	1.00
421_E	424_E	1.466	1.00
251_Y	255_L	1.462	1.00
407_Y	413_D	1.461	1.00
63_I	69_T	1.459	1.00
246_K	415_L	1.445	1.00
167_W	283_G	1.441	1.00
165_K	305_K	1.438	1.00
421_E	425_D	1.422	1.00
89_L	94_L	1.418	1.00
357_E	361_S	1.414	1.00
413_D	418_A	1.399	1.00
118_W	335_K	1.398	1.00
84_R	88_A	1.395	1.00
277_F	306_L	1.395	1.00
408_L	418_A	1.393	1.00
333_F	351_F	1.392	1.00
180_D	184_E	1.382	1.00
62_E	362_L	1.371	1.00
132_K	375_G	1.348	1.00
41_V	339_K	1.343	1.00
141_V	147_L	1.342	1.00
63_I	353_R	1.339	1.00
359_V	362_L	1.338	1.00
112_F	148_Y	1.332	1.00
186_A	284_I	1.326	1.00
97_I	351_F	1.325	1.00
171_L	189_F	1.325	1.00
407_Y	412_G	1.309	1.00
337_S	347_I	1.307	1.00
161_I	284_I	1.291	1.00
254_K	257_D	1.288	1.00
176_P	181_E	1.284	1.00
58_R	62_E	1.278	1.00
276_L	281_K	1.276	1.00
183_Y	251_Y	1.275	1.00
375_G	378_K	1.274	1.00
47_A	73_I	1.271	1.00
241_M	423_T	1.268	1.00
244_E	247_D	1.267	1.00
250_N	416_R	1.266	1.00
251_Y	254_K	1.254	1.00
173_L	188_A	1.248	1.00
69_T	349_A	1.245	1.00
60_I	73_I	1.233	1.00
394_I	397_L	1.230	1.00
420_E	423_T	1.225	1.00
13_V	17_G	1.223	1.00
180_D	315_P	1.222	1.00
100_I	332_A	1.220	1.00
122_D	125_K	1.214	1.00
160_G	308_I	1.211	1.00
77_P	80_V	1.210	1.00
96_Q	337_S	1.206	1.00
63_I	350_F	1.204	1.00
190_T	260_Y	1.201	1.00
182_L	186_A	1.200	1.00
186_A	260_Y	1.191	1.00
167_W	202_T	1.188	1.00
177_K	181_E	1.186	1.00
167_W	171_L	1.182	1.00
373_N	376_E	1.168	1.00
346_R	349_A	1.167	1.00
333_F	348_L	1.161	1.00
353_R	359_V	1.161	1.00
425_D	428_K	1.159	1.00
424_E	427_E	1.159	1.00
404_D	413_D	1.156	1.00
362_L	366_G	1.147	1.00
118_W	337_S	1.143	1.00
341_E	346_R	1.139	1.00
413_D	417_T	1.137	1.00
12_L	15_A	1.132	1.00
185_V	188_A	1.125	1.00
350_F	354_I	1.121	1.00
168_L	173_L	1.116	1.00
202_T	281_K	1.114	1.00
334_P	337_S	1.114	1.00
112_F	143_I	1.113	1.00
129_N	132_K	1.110	1.00
12_L	18_G	1.110	1.00
169_D	175_T	1.104	1.00
17_G	20_L	1.103	1.00
43_L	350_F	1.102	1.00
404_D	407_Y	1.098	1.00
8_L	15_A	1.098	1.00
168_L	185_V	1.097	1.00
41_V	68_N	1.097	1.00
174_K	181_E	1.097	1.00
272_Q	275_E	1.096	1.00
404_D	421_E	1.095	1.00
182_L	284_I	1.091	1.00
97_I	347_I	1.091	1.00
203_F	263_K	1.088	1.00
348_L	352_D	1.074	1.00
253_K	408_L	1.073	1.00
350_F	353_R	1.071	1.00
64_E	68_N	1.070	1.00
408_L	415_L	1.069	1.00
167_W	170_N	1.068	1.00
341_E	349_A	1.067	1.00
85_L	98_V	1.064	1.00
115_G	335_K	1.061	1.00
138_N	142_T	1.056	1.00
164_R	304_M	1.056	1.00
16_L	20_L	1.052	1.00
166_D	304_M	1.049	1.00
170_N	202_T	1.040	1.00
94_L	334_P	1.037	1.00
45_W	331_F	1.037	1.00
182_L	205_L	1.036	1.00
173_L	189_F	1.033	1.00
379_T	382_R	1.030	1.00
275_E	279_Q	1.026	1.00
11_V	15_A	1.025	1.00
399_A	403_I	1.022	1.00
171_L	192_D	1.019	1.00
71_L	350_F	1.018	1.00
418_A	422_L	1.014	1.00
89_L	116_M	1.011	1.00
63_I	346_R	0.996	1.00
358_D	361_S	0.994	1.00
13_V	19_V	0.994	1.00
6_R	18_G	0.988	1.00
247_D	251_Y	0.986	1.00
164_R	167_W	0.984	1.00
335_K	340_T	0.983	1.00
149_G	332_A	0.983	1.00
12_L	16_L	0.983	1.00
60_I	71_L	0.970	1.00
97_I	350_F	0.969	1.00
186_A	204_G	0.963	1.00
333_F	347_I	0.961	1.00
313_K	316_D	0.957	1.00
222_Y	227_T	0.955	1.00
188_A	191_E	0.947	1.00
253_K	415_L	0.941	1.00
11_V	18_G	0.941	1.00
62_E	358_D	0.940	1.00
66_L	358_D	0.939	1.00
14_L	17_G	0.937	1.00
250_N	253_K	0.936	1.00
23_C	26_T	0.936	1.00
400_L	425_D	0.934	1.00
129_N	352_D	0.933	1.00
19_V	22_G	0.932	1.00
98_V	332_A	0.930	1.00
121_G	125_K	0.929	1.00
169_D	305_K	0.929	1.00
128_P	131_N	0.928	1.00
407_Y	421_E	0.927	1.00
294_N	297_D	0.925	1.00
183_Y	260_Y	0.924	1.00
166_D	169_D	0.923	1.00
11_V	17_G	0.921	1.00
96_Q	339_K	0.921	1.00
84_R	87_A	0.917	1.00
15_A	19_V	0.916	1.00
276_L	282_A	0.911	1.00
82_E	107_S	0.910	1.00
171_L	188_A	0.903	1.00
185_V	284_I	0.903	1.00
58_R	366_G	0.902	1.00
23_C	27_D	0.901	1.00
222_Y	245_Y	0.901	1.00
124_I	147_L	0.901	1.00
59_A	62_E	0.900	1.00
92_G	336_T	0.890	1.00
13_V	16_L	0.879	1.00
362_L	365_Y	0.874	1.00
259_G	263_K	0.873	1.00
46_M	76_V	0.872	1.00
225_M	247_D	0.870	1.00
121_G	142_T	0.869	1.00
287_G	291_D	0.869	1.00
163_I	175_T	0.868	1.00
12_L	19_V	0.866	1.00
87_A	91_A	0.862	1.00
414_P	418_A	0.861	1.00
403_I	407_Y	0.861	1.00
240_F	245_Y	0.855	1.00
314_G	317_G	0.855	1.00
246_K	419_Y	0.852	1.00
96_Q	338_V	0.851	1.00
121_G	147_L	0.851	1.00
255_L	260_Y	0.848	1.00
112_F	117_F	0.848	1.00
403_I	425_D	0.847	1.00
8_L	11_V	0.846	1.00
98_V	117_F	0.843	1.00
14_L	18_G	0.843	1.00
43_L	346_R	0.841	1.00
239_D	242_T	0.841	1.00
138_N	147_L	0.841	1.00
117_F	148_Y	0.838	1.00
118_W	334_P	0.838	1.00
58_R	362_L	0.835	1.00
385_S	389_D	0.834	1.00
45_W	97_I	0.827	1.00
118_W	333_F	0.825	1.00
243_Q	246_K	0.822	1.00
238_P	427_E	0.821	1.00
46_M	95_P	0.820	1.00
301_D	304_M	0.819	1.00
68_N	349_A	0.818	1.00
9_L	16_L	0.817	1.00
8_L	12_L	0.817	1.00
404_D	422_L	0.810	1.00
125_K	131_N	0.808	1.00
385_S	388_K	0.807	1.00
6_R	19_V	0.806	1.00
357_E	375_G	0.806	1.00
41_V	69_T	0.805	1.00
135_K	374_K	0.805	1.00
88_A	93_N	0.802	1.00
8_L	18_G	0.799	1.00
190_T	259_G	0.795	1.00
118_W	123_Y	0.791	1.00
358_D	362_L	0.784	1.00
333_F	337_S	0.782	1.00
76_V	84_R	0.782	1.00
8_L	19_V	0.782	1.00
152_R	331_F	0.779	1.00
388_K	392_T	0.776	1.00
168_L	189_F	0.776	1.00
175_T	181_E	0.773	1.00
97_I	331_F	0.773	1.00
83_D	87_A	0.771	1.00
186_A	190_T	0.770	1.00
175_T	309_I	0.770	1.00
43_L	347_I	0.765	1.00
391_Q	394_I	0.764	1.00
302_K	306_L	0.763	1.00
162_V	287_G	0.761	1.00
361_S	379_T	0.755	1.00
228_D	232_S	0.753	1.00
249_M	419_Y	0.752	1.00
64_E	71_L	0.749	1.00
62_E	359_V	0.749	1.00
393_D	396_P	0.747	1.00
406_A	410_N	0.747	1.00
347_I	351_F	0.747	1.00
118_W	122_D	0.745	1.00
300_S	303_S	0.744	1.00
14_L	19_V	0.743	1.00
6_R	16_L	0.741	1.00
59_A	353_R	0.737	1.00
135_K	138_N	0.733	1.00
66_L	353_R	0.732	1.00
23_C	28_Q	0.730	1.00
20_L	23_C	0.728	1.00
275_E	278_S	0.728	1.00
11_V	14_L	0.726	1.00
385_S	392_T	0.725	1.00
133_M	355_A	0.723	1.00
142_T	145_G	0.723	1.00
386_Q	389_D	0.723	1.00
6_R	15_A	0.722	1.00
171_L	185_V	0.721	1.00
54_P	57_D	0.718	1.00
404_D	425_D	0.716	1.00
22_G	25_G	0.709	1.00
361_S	376_E	0.708	1.00
315_P	318_K	0.707	1.00
404_D	418_A	0.706	1.00
133_M	138_N	0.705	1.00
179_L	183_Y	0.700	1.00
40_K	67_T	0.700	1.00
175_T	185_V	0.700	1.00
393_D	397_L	0.700	1.00
390_W	394_I	0.700	1.00
262_N	276_L	0.699	1.00
395_Q	398_S	0.696	1.00
9_L	13_V	0.695	1.00
38_D	68_N	0.691	1.00
10_I	17_G	0.691	1.00
170_N	192_D	0.690	1.00
415_L	419_Y	0.689	1.00
203_F	262_N	0.688	1.00
249_M	418_A	0.686	1.00
122_D	348_L	0.686	1.00
378_K	382_R	0.686	1.00
185_V	189_F	0.685	1.00
23_C	29_S	0.685	1.00
390_W	397_L	0.684	1.00
119_E	148_Y	0.683	1.00
171_L	283_G	0.682	1.00
171_L	202_T	0.682	1.00
179_L	251_Y	0.678	1.00
43_L	337_S	0.677	1.00
313_K	317_G	0.675	1.00
190_T	203_F	0.675	1.00
394_I	398_S	0.674	1.00
9_L	12_L	0.674	1.00
392_T	395_Q	0.673	1.00
39_S	68_N	0.672	1.00
6_R	17_G	0.669	1.00
9_L	15_A	0.669	1.00
242_T	245_Y	0.666	1.00
187_K	190_T	0.665	1.00
136_L	139_K	0.665	1.00
231_E	234_G	0.663	1.00
134_N	374_K	0.663	1.00
227_T	245_Y	0.662	1.00
189_F	202_T	0.661	1.00
163_I	168_L	0.657	1.00
89_L	334_P	0.656	1.00
271_T	274_Q	0.655	1.00
164_R	305_K	0.653	1.00
183_Y	186_A	0.653	1.00
46_M	74_T	0.650	1.00
419_Y	423_T	0.649	1.00
190_T	202_T	0.646	1.00
391_Q	395_Q	0.645	1.00
223_E	228_D	0.644	1.00
59_A	359_V	0.642	1.00
340_T	348_L	0.640	1.00
123_Y	341_E	0.640	1.00
403_I	406_A	0.640	1.00
23_C	30_S	0.638	1.00
249_M	408_L	0.637	1.00
302_K	305_K	0.636	1.00
10_I	13_V	0.635	1.00
122_D	126_D	0.635	1.00
189_F	284_I	0.631	1.00
419_Y	422_L	0.631	1.00
384_E	388_K	0.631	1.00
17_G	21_A	0.630	1.00
59_A	354_I	0.629	1.00
164_R	280_G	0.629	1.00
271_T	275_E	0.629	1.00
247_D	314_G	0.628	1.00
192_D	202_T	0.627	1.00
94_L	336_T	0.627	1.00
300_S	304_M	0.627	1.00
41_V	67_T	0.627	1.00
101_Q	106_S	0.626	1.00
223_E	226_P	0.626	1.00
6_R	9_L	0.626	1.00
384_E	387_V	0.625	1.00
122_D	146_K	0.624	1.00
45_W	60_I	0.624	1.00
416_R	419_Y	0.622	1.00
225_M	251_Y	0.622	1.00
400_L	422_L	0.621	1.00
374_K	378_K	0.621	1.00
9_L	19_V	0.621	1.00
376_E	379_T	0.620	1.00
45_W	350_F	0.619	1.00
43_L	339_K	0.619	1.00
242_T	246_K	0.619	1.00
155_P	329_G	0.619	1.00
231_E	239_D	0.618	1.00
26_T	29_S	0.618	1.00
268_T	276_L	0.618	1.00
18_G	21_A	0.617	1.00
168_L	175_T	0.617	1.00
67_T	350_F	0.616	1.00
375_G	379_T	0.615	1.00
293_V	297_D	0.613	1.00
273_Q	285_Y	0.611	1.00
81_K	85_L	0.610	1.00
108_V	149_G	0.610	1.00
404_D	408_L	0.609	1.00
66_L	356_E	0.609	1.00
10_I	14_L	0.606	1.00
27_D	30_S	0.605	1.00
374_K	377_D	0.605	1.00
248_T	252_M	0.603	1.00
128_P	132_K	0.603	1.00
118_W	348_L	0.596	1.00
82_E	110_N	0.595	1.00
125_K	128_P	0.595	1.00
100_I	111_A	0.594	1.00
296_R	306_L	0.594	1.00
388_K	394_I	0.594	1.00
40_K	69_T	0.592	1.00
405_K	409_K	0.592	1.00
357_E	373_N	0.591	1.00
256_R	261_M	0.591	1.00
392_T	396_P	0.590	1.00
118_W	336_T	0.588	1.00
206_A	273_Q	0.588	1.00
390_W	393_D	0.587	1.00
7_V	18_G	0.586	1.00
130_L	138_N	0.586	1.00
22_G	26_T	0.585	1.00
220_G	223_E	0.584	1.00
210_D	269_S	0.583	1.00
108_V	112_F	0.582	1.00
10_I	16_L	0.581	1.00
422_L	426_N	0.581	1.00
176_P	284_I	0.579	1.00
173_L	176_P	0.578	1.00
169_D	172_N	0.577	1.00
86_N	110_N	0.577	1.00
162_V	308_I	0.576	1.00
191_E	202_T	0.576	1.00
6_R	12_L	0.575	1.00
7_V	14_L	0.574	1.00
64_E	69_T	0.574	1.00
110_N	114_S	0.572	1.00
67_T	353_R	0.572	1.00
124_I	348_L	0.571	1.00
162_V	292_A	0.571	1.00
389_D	393_D	0.570	1.00
179_L	224_G	0.569	1.00
377_D	380_F	0.568	1.00
418_A	421_E	0.568	1.00
132_K	373_N	0.567	1.00
74_T	84_R	0.566	1.00
391_Q	397_L	0.565	1.00
390_W	395_Q	0.565	1.00
13_V	18_G	0.565	1.00
78_D	82_E	0.564	1.00
25_G	28_Q	0.564	1.00
48_I	81_K	0.564	1.00
67_T	346_R	0.563	1.00
123_Y	340_T	0.562	1.00
107_S	110_N	0.562	1.00
38_D	41_V	0.561	1.00
253_K	256_R	0.559	1.00
43_L	96_Q	0.558	1.00
292_A	296_R	0.558	1.00
20_L	25_G	0.557	1.00
278_S	298_H	0.556	1.00
155_P	328_N	0.555	1.00
228_D	231_E	0.554	1.00
59_A	362_L	0.553	1.00
276_L	279_Q	0.553	1.00
174_K	185_V	0.552	1.00
115_G	118_W	0.552	1.00
341_E	348_L	0.551	1.00
6_R	20_L	0.551	1.00
399_A	402_A	0.550	1.00
43_L	97_I	0.550	1.00
109_M	113_R	0.550	1.00
82_E	101_Q	0.550	1.00
8_L	16_L	0.549	1.00
427_E	430_I	0.549	1.00
161_I	286_I	0.549	1.00
116_M	119_E	0.548	1.00
21_A	25_G	0.546	1.00
180_D	251_Y	0.546	1.00
204_G	260_Y	0.542	1.00
24_K	27_D	0.541	1.00
238_P	423_T	0.541	1.00
63_I	71_L	0.539	1.00
44_S	88_A	0.537	1.00
186_A	255_L	0.537	1.00
189_F	192_D	0.536	1.00
338_V	341_E	0.535	1.00
26_T	30_S	0.535	1.00
394_I	401_I	0.535	1.00
19_V	23_C	0.534	1.00
252_M	256_R	0.533	1.00
407_Y	411_T	0.533	1.00
123_Y	126_D	0.532	1.00
112_F	115_G	0.531	1.00
313_K	318_K	0.530	1.00
415_L	418_A	0.530	1.00
268_T	272_Q	0.529	1.00
121_G	348_L	0.529	1.00
74_T	88_A	0.529	1.00
11_V	16_L	0.528	1.00
108_V	117_F	0.527	1.00
202_T	283_G	0.527	1.00
425_D	429_I	0.527	1.00
389_D	394_I	0.527	1.00
408_L	413_D	0.526	1.00
88_A	95_P	0.524	1.00
44_S	96_Q	0.522	1.00
331_F	354_I	0.522	1.00
356_E	360_Y	0.520	1.00
294_N	298_H	0.520	1.00
120_I	351_F	0.520	1.00
400_L	404_D	0.519	1.00
28_Q	31_A	0.519	1.00
328_N	331_F	0.518	1.00
120_I	333_F	0.517	1.00
31_A	37_P	0.517	1.00
172_N	192_D	0.517	1.00
83_D	86_N	0.517	1.00
109_M	143_I	0.516	1.00
80_V	84_R	0.515	1.00
169_D	307_E	0.515	1.00
57_D	60_I	0.514	1.00
392_T	398_S	0.511	1.00
100_I	117_F	0.511	1.00
393_D	398_S	0.511	1.00
177_K	313_K	0.510	1.00
240_F	426_N	0.509	1.00
390_W	396_P	0.508	1.00
392_T	397_L	0.508	1.00
141_V	149_G	0.508	1.00
12_L	17_G	0.508	1.00
101_Q	327_H	0.507	1.00
18_G	22_G	0.505	1.00
383_K	386_Q	0.505	1.00
348_L	351_F	0.503	1.00
222_Y	248_T	0.502	1.00
56_K	59_A	0.502	1.00
6_R	21_A	0.501	1.00
6_R	22_G	0.501	1.00
232_S	235_K	0.500	1.00
111_A	117_F	0.500	1.00
132_K	374_K	0.500	1.00
21_A	24_K	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ombA	1	0.9016	100	0.266	Contact Map
4r2fA	1	0.7309	100	0.312	Contact Map
4r9fA	1	0.7369	100	0.323	Contact Map
3uorA	1	0.759	100	0.327	Contact Map
4mfiA	1	0.753	100	0.339	Contact Map
4r6kA	1	0.741	100	0.339	Contact Map
3vxbA	1	0.7349	100	0.341	Contact Map
3a09A	1	0.9076	100	0.349	Contact Map
4r6hA	1	0.747	100	0.359	Contact Map
2w7yA	1	0.7088	100	0.364	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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