YYCH - BACSU - GREMLIN Contacts

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YYCH - Two-component system YycF/YycG regulatory protein YycH

UniProt:	Q794W0	Sequences: MKRENIKTILLTVLVVISLVFTWGIWTFQPNFSEGSSSTESTVRVKHKIEKTTQKLSETVRPRDMFIHDDGAHYKVDDNALYEEIWSDLPHWDVKGIKDISDQYDKAGFKSWFYGIGGSEAKLDLQFSDTIPIDIFQTLFKWSNQSFEYSSFDHILIPFNETKANKKIYLVSYSKQLILEVTVESANYRNIMNDLKNRQSNMPAFSLFSIGSKKEFLLPNKPLTMDKKEFVTESIKTNTFKQALFSDPSIVREDSNYNNRNVLTDGISRLDVNLSQRQVQFQQRNLVQSTSYQTGELIKKSQKYLEDTGSWTDHYQFFNINDSQQLSFYIFMDQIPVINSTAKPFGATSAITVQWANDDILSYKRPNYSLGTNPIKTSETELMGGSEVKMLLSKQTAYDTDKIDQIFLAYQLVSTSTNDDPLVELEPVWAMKVNGKIVPITKDLLRKEGANSGVE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	455 (415)
Sequences:	464 (399)
Seq/√Len:	19.6

BACSU - YYCH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
4_E	7_K	4.252	1.00
308_T	365_R	4.065	1.00
68_H	124_D	3.949	1.00
310_S	365_R	3.211	1.00
404_D	432_K	2.996	0.99
388_V	431_M	2.942	0.99
89_L	92_W	2.767	0.99
301_S	328_F	2.753	0.98
9_I	123_L	2.661	0.98
132_P	306_E	2.609	0.98
411_Q	439_P	2.581	0.98
245_F	429_W	2.567	0.98
409_A	437_I	2.565	0.98
308_T	363_Y	2.559	0.98
68_H	73_H	2.545	0.97
409_A	430_A	2.511	0.97
11_L	18_S	2.498	0.97
338_I	409_A	2.481	0.97
59_T	302_Q	2.418	0.96
4_E	8_T	2.399	0.96
304_Y	360_I	2.383	0.96
105_D	191_I	2.375	0.96
13_V	17_I	2.372	0.96
195_L	408_L	2.349	0.96
23_W	27_T	2.343	0.96
59_T	408_L	2.305	0.95
430_A	437_I	2.301	0.95
8_T	60_V	2.296	0.95
281_F	304_Y	2.233	0.94
21_F	128_S	2.228	0.94
153_D	244_L	2.215	0.94
25_I	219_P	2.213	0.94
349_S	412_L	2.177	0.94
273_N	276_Q	2.142	0.93
133_I	170_L	2.141	0.93
48_K	59_T	2.140	0.93
400_T	403_I	2.134	0.93
6_I	10_L	2.093	0.92
167_K	180_E	2.056	0.92
50_E	54_Q	2.045	0.91
264_T	328_F	2.041	0.91
338_I	430_A	2.039	0.91
105_D	108_G	2.021	0.91
310_S	363_Y	2.013	0.91
20_V	24_G	1.990	0.90
65_M	123_L	1.977	0.90
224_T	379_E	1.941	0.89
169_Y	244_L	1.938	0.89
30_P	308_T	1.918	0.88
386_S	390_M	1.915	0.88
406_I	431_M	1.902	0.88
187_N	337_V	1.890	0.88
15_V	351_I	1.888	0.88
279_V	415_T	1.881	0.87
126_Q	154_H	1.867	0.87
140_F	266_G	1.865	0.87
30_P	365_R	1.864	0.87
232_T	337_V	1.849	0.86
109_F	173_Y	1.820	0.86
318_F	430_A	1.815	0.85
312_T	366_P	1.813	0.85
170_L	181_V	1.804	0.85
7_K	14_L	1.796	0.85
152_F	170_L	1.768	0.84
8_T	14_L	1.746	0.83
281_F	378_S	1.745	0.83
22_T	28_F	1.740	0.83
230_F	332_M	1.738	0.83
316_Q	331_F	1.724	0.82
14_L	429_W	1.713	0.82
398_Y	403_I	1.686	0.81
7_K	219_P	1.676	0.80
7_K	245_F	1.672	0.80
305_L	310_S	1.667	0.80
168_I	299_K	1.638	0.79
13_V	296_E	1.590	0.77
7_K	60_V	1.578	0.76
240_F	301_S	1.576	0.76
60_V	284_R	1.574	0.76
56_L	331_F	1.571	0.76
129_D	317_F	1.565	0.75
318_F	338_I	1.562	0.75
18_S	21_F	1.544	0.74
22_T	171_V	1.539	0.74
295_G	317_F	1.515	0.73
407_F	437_I	1.513	0.73
98_K	317_F	1.511	0.73
127_F	425_L	1.502	0.72
8_T	219_P	1.496	0.72
30_P	304_Y	1.482	0.71
20_V	127_F	1.472	0.71
127_F	330_I	1.469	0.71
124_D	154_H	1.467	0.70
15_V	204_A	1.465	0.70
11_L	21_F	1.460	0.70
410_Y	425_L	1.455	0.70
331_F	336_P	1.451	0.70
155_I	293_Q	1.445	0.69
70_D	435_G	1.441	0.69
30_P	429_W	1.441	0.69
187_N	299_K	1.427	0.68
18_S	427_P	1.425	0.68
318_F	328_F	1.423	0.68
264_T	268_S	1.416	0.68
318_F	329_Y	1.411	0.67
131_I	317_F	1.402	0.67
94_V	168_I	1.401	0.67
76_V	82_Y	1.394	0.66
87_S	123_L	1.394	0.66
7_K	365_R	1.389	0.66
236_K	440_I	1.388	0.66
144_N	380_T	1.378	0.66
121_A	401_D	1.375	0.65
21_F	334_Q	1.373	0.65
411_Q	428_V	1.372	0.65
382_L	408_L	1.363	0.65
216_F	225_M	1.352	0.64
10_L	19_L	1.345	0.64
156_L	169_Y	1.344	0.64
10_L	155_I	1.341	0.63
114_Y	217_L	1.339	0.63
221_K	325_Q	1.328	0.63
135_I	187_N	1.313	0.62
71_G	157_I	1.312	0.62
321_N	435_G	1.310	0.61
54_Q	58_E	1.306	0.61
187_N	195_L	1.304	0.61
85_I	387_E	1.303	0.61
155_I	329_Y	1.301	0.61
349_S	366_P	1.301	0.61
228_K	333_D	1.301	0.61
132_P	385_G	1.294	0.61
153_D	416_S	1.290	0.60
47_H	50_E	1.287	0.60
22_T	243_A	1.284	0.60
245_F	365_R	1.280	0.60
71_G	185_S	1.279	0.60
142_W	337_V	1.272	0.59
404_D	435_G	1.268	0.59
75_K	205_F	1.266	0.59
402_K	434_N	1.264	0.59
228_K	298_I	1.261	0.58
15_V	30_P	1.249	0.58
9_I	435_G	1.239	0.57
318_F	407_F	1.218	0.56
8_T	373_N	1.213	0.55
312_T	330_I	1.206	0.55
332_M	425_L	1.205	0.55
168_I	191_I	1.199	0.55
67_I	92_W	1.197	0.54
123_L	187_N	1.196	0.54
9_I	300_K	1.194	0.54
30_P	310_S	1.194	0.54
303_K	334_Q	1.190	0.54
191_I	241_K	1.186	0.54
15_V	18_S	1.182	0.53
298_I	310_S	1.176	0.53
181_V	281_F	1.174	0.53
172_S	353_V	1.173	0.53
60_V	131_I	1.170	0.53
56_L	233_E	1.167	0.53
20_V	32_F	1.167	0.53
269_R	429_W	1.165	0.52
138_T	441_T	1.161	0.52
227_K	378_S	1.159	0.52
240_F	366_P	1.153	0.52
241_K	270_L	1.152	0.52
58_E	390_M	1.139	0.51
133_I	326_L	1.138	0.51
75_K	335_I	1.137	0.51
64_D	113_F	1.133	0.50
392_L	409_A	1.133	0.50
70_D	107_A	1.129	0.50
110_K	357_N	1.123	0.50
333_D	338_I	1.122	0.50
311_W	365_R	1.118	0.49
31_N	406_I	1.113	0.49
85_I	214_K	1.112	0.49
152_F	301_S	1.111	0.49
241_K	252_R	1.110	0.49
150_S	179_L	1.106	0.49
123_L	276_Q	1.102	0.48
68_H	311_W	1.099	0.48
312_T	315_Y	1.095	0.48
82_Y	251_V	1.090	0.48
308_T	311_W	1.089	0.48
220_N	386_S	1.077	0.47
247_D	429_W	1.069	0.46
85_I	328_F	1.067	0.46
241_K	261_N	1.067	0.46
14_L	310_S	1.065	0.46
247_D	252_R	1.061	0.46
319_N	328_F	1.061	0.46
11_L	62_P	1.060	0.46
153_D	173_Y	1.052	0.45
132_P	365_R	1.051	0.45
413_V	426_E	1.051	0.45
400_T	440_I	1.046	0.45
191_I	210_I	1.040	0.44
30_P	360_I	1.029	0.44
11_L	14_L	1.027	0.44
124_D	311_W	1.027	0.44
8_T	12_T	1.022	0.43
228_K	254_D	1.020	0.43
52_T	394_K	1.019	0.43
279_V	367_N	1.018	0.43
229_E	424_E	1.014	0.43
360_I	408_L	1.013	0.43
4_E	429_W	1.010	0.42
68_H	218_L	1.005	0.42
109_F	119_S	0.999	0.42
392_L	416_S	0.998	0.42
57_S	388_V	0.995	0.42
265_D	268_S	0.987	0.41
433_V	436_K	0.985	0.41
251_V	270_L	0.985	0.41
248_P	265_D	0.982	0.41
284_R	308_T	0.979	0.41
283_Q	384_G	0.978	0.40
110_K	139_L	0.977	0.40
16_V	36_S	0.975	0.40
279_V	368_Y	0.972	0.40
367_N	431_M	0.971	0.40
13_V	89_L	0.970	0.40
4_E	306_E	0.970	0.40
136_F	195_L	0.969	0.40
15_V	285_N	0.966	0.40
306_E	310_S	0.964	0.40
281_F	310_S	0.963	0.40
136_F	152_F	0.957	0.39
8_T	317_F	0.955	0.39
405_Q	432_K	0.954	0.39
173_Y	298_I	0.953	0.39
256_N	430_A	0.952	0.39
105_D	259_N	0.951	0.39
132_P	263_L	0.951	0.39
15_V	374_P	0.950	0.39
49_I	152_F	0.949	0.39
268_S	287_V	0.945	0.38
60_V	218_L	0.944	0.38
76_V	271_D	0.944	0.38
217_L	429_W	0.943	0.38
354_Q	362_S	0.940	0.38
266_G	284_R	0.940	0.38
23_W	297_L	0.929	0.37
383_M	388_V	0.926	0.37
383_M	440_I	0.926	0.37
65_M	393_S	0.924	0.37
248_P	281_F	0.924	0.37
7_K	304_Y	0.920	0.37
7_K	11_L	0.919	0.37
12_T	32_F	0.918	0.37
64_D	367_N	0.914	0.37
206_S	220_N	0.911	0.36
64_D	84_E	0.910	0.36
245_F	251_V	0.908	0.36
138_T	174_S	0.901	0.36
269_R	368_Y	0.899	0.36
7_K	205_F	0.898	0.36
17_I	151_S	0.897	0.36
314_H	332_M	0.895	0.35
383_M	387_E	0.893	0.35
66_F	242_Q	0.891	0.35
252_R	304_Y	0.890	0.35
131_I	136_F	0.890	0.35
244_L	370_L	0.887	0.35
20_V	357_N	0.884	0.35
174_S	392_L	0.879	0.35
15_V	80_A	0.876	0.34
35_G	76_V	0.875	0.34
304_Y	308_T	0.874	0.34
15_V	304_Y	0.872	0.34
266_G	332_M	0.867	0.34
67_I	71_G	0.867	0.34
16_V	172_S	0.867	0.34
30_P	363_Y	0.867	0.34
422_L	425_L	0.863	0.34
131_I	229_E	0.862	0.34
18_S	22_T	0.862	0.34
62_P	309_G	0.861	0.34
18_S	392_L	0.860	0.33
259_N	317_F	0.860	0.33
129_D	153_D	0.860	0.33
124_D	367_N	0.853	0.33
181_V	381_E	0.852	0.33
49_I	431_M	0.852	0.33
230_F	295_G	0.849	0.33
308_T	356_A	0.845	0.33
261_N	270_L	0.845	0.33
64_D	337_V	0.844	0.33
332_M	373_N	0.841	0.32
26_W	312_T	0.837	0.32
304_Y	363_Y	0.830	0.32
99_D	111_S	0.829	0.32
99_D	177_L	0.827	0.32
12_T	82_Y	0.822	0.31
15_V	253_E	0.820	0.31
64_D	334_Q	0.817	0.31
77_D	157_I	0.809	0.31
11_L	22_T	0.806	0.30
26_W	244_L	0.806	0.30
202_M	245_F	0.804	0.30
179_L	425_L	0.804	0.30
29_Q	440_I	0.802	0.30
89_L	393_S	0.800	0.30
301_S	360_I	0.800	0.30
166_K	183_V	0.799	0.30
61_R	127_F	0.799	0.30
279_V	366_P	0.798	0.30
152_F	158_P	0.797	0.30
376_K	415_T	0.794	0.30
170_L	173_Y	0.794	0.30
122_K	156_L	0.792	0.30
141_K	331_F	0.792	0.30
22_T	313_D	0.788	0.29
309_G	336_P	0.784	0.29
20_V	193_N	0.783	0.29
248_P	363_Y	0.783	0.29
87_S	198_R	0.780	0.29
172_S	370_L	0.780	0.29
168_I	325_Q	0.779	0.29
25_I	240_F	0.779	0.29
14_L	245_F	0.778	0.29
337_V	383_M	0.776	0.29
268_S	367_N	0.776	0.29
22_T	398_Y	0.776	0.29
240_F	319_N	0.775	0.29
7_K	308_T	0.773	0.29
311_W	429_W	0.770	0.29
284_R	365_R	0.770	0.29
76_V	268_S	0.768	0.28
190_N	323_S	0.764	0.28
306_E	315_Y	0.762	0.28
388_V	437_I	0.761	0.28
179_L	381_E	0.760	0.28
193_N	425_L	0.760	0.28
250_I	403_I	0.759	0.28
14_L	30_P	0.759	0.28
225_M	433_V	0.759	0.28
125_L	392_L	0.758	0.28
16_V	381_E	0.756	0.28
59_T	386_S	0.755	0.28
277_R	367_N	0.754	0.28
127_F	172_S	0.754	0.28
108_G	112_W	0.750	0.27
261_N	337_V	0.750	0.27
22_T	26_W	0.747	0.27
15_V	238_N	0.745	0.27
393_S	406_I	0.743	0.27
310_S	330_I	0.741	0.27
403_I	434_N	0.739	0.27
304_Y	365_R	0.739	0.27
25_I	379_E	0.739	0.27
177_L	406_I	0.739	0.27
11_L	245_F	0.736	0.27
121_A	435_G	0.736	0.27
65_M	378_S	0.734	0.27
10_L	14_L	0.731	0.27
225_M	352_T	0.731	0.27
21_F	177_L	0.730	0.26
234_S	276_Q	0.729	0.26
6_I	94_V	0.728	0.26
43_V	142_W	0.728	0.26
167_K	307_D	0.727	0.26
59_T	402_K	0.725	0.26
23_W	426_E	0.723	0.26
60_V	359_D	0.722	0.26
34_E	270_L	0.719	0.26
105_D	110_K	0.718	0.26
61_R	316_Q	0.718	0.26
106_K	111_S	0.718	0.26
124_D	385_G	0.718	0.26
329_Y	367_N	0.717	0.26
71_G	161_E	0.716	0.26
318_F	432_K	0.716	0.26
3_R	409_A	0.715	0.26
170_L	251_V	0.715	0.26
19_L	167_K	0.715	0.26
139_L	438_V	0.715	0.26
149_Y	222_P	0.712	0.26
58_E	275_S	0.712	0.26
315_Y	363_Y	0.711	0.26
123_L	296_E	0.710	0.25
168_I	334_Q	0.706	0.25
403_I	433_V	0.706	0.25
254_D	437_I	0.706	0.25
120_E	266_G	0.705	0.25
229_E	437_I	0.703	0.25
17_I	113_F	0.702	0.25
392_L	427_P	0.701	0.25
111_S	435_G	0.701	0.25
79_N	187_N	0.700	0.25
71_G	288_Q	0.698	0.25
206_S	386_S	0.696	0.25
197_N	381_E	0.696	0.25
91_H	378_S	0.694	0.25
19_L	215_E	0.693	0.25
73_H	124_D	0.692	0.25
382_L	427_P	0.692	0.25
130_T	384_G	0.692	0.25
152_F	199_Q	0.692	0.25
189_R	328_F	0.687	0.24
25_I	224_T	0.687	0.24
149_Y	279_V	0.687	0.24
70_D	419_D	0.687	0.24
22_T	409_A	0.686	0.24
338_I	437_I	0.683	0.24
277_R	361_L	0.683	0.24
33_S	314_H	0.682	0.24
352_T	404_D	0.680	0.24
351_I	429_W	0.680	0.24
99_D	317_F	0.679	0.24
304_Y	310_S	0.678	0.24
9_I	21_F	0.678	0.24
87_S	90_P	0.674	0.24
6_I	136_F	0.673	0.24
106_K	401_D	0.671	0.24
52_T	59_T	0.668	0.23
11_L	429_W	0.668	0.23
132_P	429_W	0.668	0.23
331_F	423_V	0.668	0.23
225_M	273_N	0.667	0.23
11_L	427_P	0.665	0.23
131_I	146_S	0.663	0.23
232_T	352_T	0.656	0.23
131_I	360_I	0.656	0.23
124_D	305_L	0.653	0.23
121_A	328_F	0.652	0.23
4_E	22_T	0.652	0.23
216_F	234_S	0.650	0.23
94_V	353_V	0.649	0.23
138_T	399_D	0.648	0.23
6_I	358_D	0.648	0.23
171_V	312_T	0.648	0.23
158_P	169_Y	0.647	0.23
254_D	425_L	0.647	0.23
306_E	365_R	0.647	0.23
263_L	331_F	0.647	0.23
243_A	281_F	0.642	0.22
275_S	303_K	0.642	0.22
92_W	412_L	0.639	0.22
152_F	430_A	0.636	0.22
7_K	30_P	0.636	0.22
86_W	262_V	0.636	0.22
309_G	330_I	0.635	0.22
82_Y	430_A	0.633	0.22
56_L	172_S	0.630	0.22
4_E	11_L	0.627	0.22
132_P	363_Y	0.626	0.22
66_F	405_Q	0.626	0.22
153_D	236_K	0.626	0.22
10_L	323_S	0.626	0.22
22_T	186_A	0.625	0.22
236_K	435_G	0.625	0.22
168_I	368_Y	0.624	0.22
376_K	390_M	0.624	0.22
39_T	70_D	0.624	0.22
125_L	133_I	0.624	0.22
281_F	376_K	0.623	0.21
270_L	382_L	0.621	0.21
265_D	385_G	0.621	0.21
58_E	173_Y	0.619	0.21
315_Y	412_L	0.617	0.21
213_K	288_Q	0.617	0.21
349_S	397_A	0.616	0.21
89_L	139_L	0.616	0.21
160_N	192_M	0.615	0.21
33_S	413_V	0.614	0.21
229_E	301_S	0.614	0.21
7_K	429_W	0.613	0.21
37_S	98_K	0.613	0.21
178_I	382_L	0.613	0.21
311_W	385_G	0.612	0.21
48_K	354_Q	0.611	0.21
71_G	408_L	0.611	0.21
134_D	157_I	0.610	0.21
308_T	412_L	0.609	0.21
249_S	265_D	0.609	0.21
272_V	425_L	0.608	0.21
42_T	423_V	0.608	0.21
258_N	262_V	0.605	0.21
26_W	437_I	0.602	0.21
37_S	85_I	0.602	0.21
64_D	75_K	0.601	0.21
374_P	428_V	0.601	0.21
134_D	176_Q	0.600	0.20
124_D	245_F	0.600	0.20
262_V	284_R	0.599	0.20
14_L	304_Y	0.599	0.20
205_F	297_L	0.599	0.20
64_D	263_L	0.598	0.20
26_W	249_S	0.597	0.20
244_L	348_T	0.596	0.20
401_D	441_T	0.594	0.20
139_L	383_M	0.593	0.20
39_T	134_D	0.593	0.20
105_D	303_K	0.591	0.20
201_N	317_F	0.591	0.20
294_T	318_F	0.590	0.20
179_L	416_S	0.590	0.20
84_E	376_K	0.589	0.20
154_H	365_R	0.589	0.20
19_L	136_F	0.587	0.20
63_R	334_Q	0.586	0.20
136_F	350_A	0.585	0.20
70_D	386_S	0.585	0.20
39_T	42_T	0.584	0.20
300_K	339_N	0.583	0.20
189_R	321_N	0.583	0.20
297_L	355_W	0.583	0.20
381_E	391_L	0.581	0.20
67_I	213_K	0.580	0.20
244_L	298_I	0.579	0.20
198_R	362_S	0.577	0.20
58_E	100_I	0.576	0.20
85_I	184_E	0.576	0.20
176_Q	259_N	0.576	0.20
153_D	337_V	0.576	0.20
242_Q	328_F	0.575	0.19
301_S	423_V	0.574	0.19
338_I	433_V	0.573	0.19
270_L	368_Y	0.573	0.19
35_G	57_S	0.573	0.19
399_D	402_K	0.572	0.19
258_N	390_M	0.572	0.19
225_M	272_V	0.572	0.19
281_F	370_L	0.571	0.19
400_T	406_I	0.571	0.19
388_V	406_I	0.571	0.19
311_W	363_Y	0.571	0.19
126_Q	218_L	0.570	0.19
155_I	168_I	0.567	0.19
18_S	429_W	0.567	0.19
29_Q	312_T	0.567	0.19
18_S	265_D	0.566	0.19
245_F	298_I	0.566	0.19
125_L	390_M	0.565	0.19
7_K	18_S	0.565	0.19
142_W	362_S	0.565	0.19
35_G	356_A	0.565	0.19
404_D	436_K	0.565	0.19
191_I	194_D	0.558	0.19
323_S	340_S	0.557	0.19
304_Y	309_G	0.557	0.19
25_I	86_W	0.557	0.19
186_A	408_L	0.557	0.19
169_Y	326_L	0.556	0.19
243_A	248_P	0.556	0.19
30_P	311_W	0.555	0.19
22_T	302_Q	0.553	0.19
281_F	410_Y	0.552	0.19
222_P	381_E	0.552	0.19
233_E	351_I	0.550	0.18
20_V	281_F	0.549	0.18
207_L	403_I	0.548	0.18
89_L	380_T	0.547	0.18
168_I	273_N	0.547	0.18
92_W	183_V	0.545	0.18
87_S	98_K	0.545	0.18
210_I	327_S	0.545	0.18
29_Q	412_L	0.544	0.18
17_I	36_S	0.544	0.18
357_N	371_G	0.543	0.18
59_T	188_Y	0.542	0.18
331_F	430_A	0.542	0.18
13_V	242_Q	0.540	0.18
228_K	233_E	0.540	0.18
291_S	423_V	0.540	0.18
348_T	353_V	0.539	0.18
29_Q	366_P	0.538	0.18
17_I	296_E	0.534	0.18
197_N	401_D	0.533	0.18
231_V	432_K	0.532	0.18
15_V	433_V	0.531	0.18
253_E	302_Q	0.531	0.18
223_L	382_L	0.531	0.18
54_Q	191_I	0.530	0.18
165_N	187_N	0.530	0.18
427_P	437_I	0.529	0.18
91_H	377_T	0.529	0.18
13_V	48_K	0.528	0.18
287_V	367_N	0.528	0.18
160_N	289_S	0.528	0.18
7_K	315_Y	0.528	0.18
98_K	197_N	0.527	0.18
8_T	315_Y	0.526	0.18
132_P	311_W	0.525	0.18
218_L	265_D	0.525	0.18
161_E	206_S	0.524	0.17
138_T	298_I	0.524	0.17
12_T	185_S	0.523	0.17
88_D	92_W	0.523	0.17
75_K	82_Y	0.521	0.17
81_L	173_Y	0.520	0.17
109_F	263_L	0.520	0.17
4_E	251_V	0.519	0.17
137_Q	180_E	0.519	0.17
85_I	340_S	0.519	0.17
312_T	337_V	0.518	0.17
340_S	408_L	0.518	0.17
269_R	360_I	0.518	0.17
98_K	184_E	0.518	0.17
249_S	414_S	0.517	0.17
38_S	349_S	0.516	0.17
64_D	139_L	0.516	0.17
178_I	213_K	0.514	0.17
8_T	424_E	0.513	0.17
32_F	216_F	0.511	0.17
43_V	280_Q	0.510	0.17
235_I	315_Y	0.510	0.17
275_S	387_E	0.510	0.17
362_S	404_D	0.509	0.17
21_F	321_N	0.507	0.17
86_W	181_V	0.507	0.17
11_L	15_V	0.506	0.17
18_S	370_L	0.505	0.17
184_E	263_L	0.503	0.17
83_E	353_V	0.502	0.17
245_F	330_I	0.502	0.17
4_E	412_L	0.502	0.17
374_P	408_L	0.501	0.17
4_E	244_L	0.500	0.17

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2fgtA	1	0.8	100	0.286	Contact Map
2o3oA	2	0.5099	99.9	0.771	Contact Map
4k90B	1	0.3604	96	0.932	Contact Map
3nqzA	1	0.3363	78.4	0.954	Contact Map
2mc7A	1	0.0659	10.8	0.973	Contact Map
5ajdB	1	0.1121	7.7	0.975	Contact Map
2j5lA	1	0	5.7	0.976	Contact Map
4pj0Y	1	0.0637	5	0.977	Contact Map
1m56D	1	0.0484	4.9	0.977	Contact Map
2l6wA	2	0.0725	4	0.978	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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