YBBP - BACSU - GREMLIN Contacts

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YBBP - Uncharacterized protein YbbP

UniProt:	Q45589	Sequences: MAFEDIPFLQYLGNAVDILLVWYVIYKLIMVIRGTKAVQLLKGIVVIVLVRMASQYLGLSTLQWLMDQAITWGFLAIIIIFQPELRRALEQLGRGRFFSRSGTPVEEAQQKTIEAITKAINYMAKRRIGALLTIERDTGMGDYIETGIPLNAKVSSELLINIFIPNTPLHDGAVIMKNNEIAAAACYLPLSESPFISKELGTRHRAAVGISEVTDSLTIIVSEETGGVSVAKNGDLHRELTEEALKEMLEAEFKKNTRDTSSNRWYWRGKKNG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	273 (249)
Sequences:	1522 (1074)
Seq/√Len:	68.1

BACSU - YBBP YOJJ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
207_A	220_I	7.353	1.00
159_L	174_V	5.474	1.00
151_N	180_E	5.199	1.00
210_I	218_T	4.386	1.00
183_A	186_C	3.848	1.00
135_E	177_K	3.788	1.00
121_N	228_V	3.585	1.00
143_Y	175_I	3.547	1.00
133_T	210_I	3.028	1.00
23_Y	27_K	2.985	1.00
112_T	154_V	2.896	1.00
116_I	134_I	2.879	1.00
128_I	165_P	2.874	1.00
211_S	218_T	2.758	1.00
241_T	244_A	2.733	1.00
27_K	30_M	2.715	1.00
191_S	196_I	2.710	1.00
75_L	79_I	2.700	1.00
161_N	167_T	2.643	1.00
231_A	236_L	2.592	1.00
11_Y	14_N	2.523	1.00
114_E	246_K	2.474	1.00
173_A	188_L	2.467	1.00
134_I	219_I	2.331	1.00
17_D	21_V	2.114	1.00
190_L	202_T	2.103	1.00
200_L	238_R	2.056	1.00
122_Y	160_I	2.037	1.00
237_H	248_M	1.939	1.00
152_A	158_L	1.922	1.00
120_I	219_I	1.904	1.00
133_T	188_L	1.869	1.00
119_A	123_M	1.869	1.00
177_K	182_A	1.858	1.00
124_A	225_T	1.823	1.00
191_S	208_V	1.738	1.00
196_I	208_V	1.711	1.00
54_S	63_Q	1.694	1.00
232_K	252_E	1.693	1.00
219_I	245_L	1.654	0.99
133_T	218_T	1.602	0.99
117_T	245_L	1.601	0.99
75_L	78_I	1.599	0.99
199_E	238_R	1.597	0.99
40_L	85_L	1.591	0.99
20_L	62_L	1.570	0.99
120_I	132_L	1.531	0.99
164_I	167_T	1.510	0.99
120_I	124_A	1.485	0.99
153_K	180_E	1.473	0.99
130_A	221_V	1.468	0.99
71_T	75_L	1.464	0.99
10_Q	15_A	1.450	0.98
230_V	248_M	1.441	0.98
118_K	156_S	1.407	0.98
120_I	228_V	1.403	0.98
248_M	251_A	1.375	0.98
128_I	164_I	1.373	0.98
10_Q	14_N	1.346	0.97
120_I	245_L	1.340	0.97
187_Y	202_T	1.336	0.97
110_Q	250_E	1.327	0.97
132_L	176_M	1.326	0.97
24_V	62_L	1.321	0.97
161_N	166_N	1.292	0.97
43_G	93_G	1.286	0.97
117_T	246_K	1.274	0.96
113_I	250_E	1.248	0.96
117_T	242_E	1.225	0.96
143_Y	213_V	1.219	0.95
13_G	59_L	1.218	0.95
121_N	242_E	1.213	0.95
148_I	157_E	1.201	0.95
218_T	231_A	1.198	0.95
220_I	231_A	1.189	0.95
143_Y	214_T	1.186	0.95
160_I	164_I	1.181	0.95
136_R	217_L	1.177	0.94
113_I	253_F	1.173	0.94
211_S	234_G	1.153	0.94
227_G	239_E	1.139	0.93
36_K	90_E	1.125	0.93
174_V	184_A	1.114	0.93
154_V	176_M	1.108	0.92
57_L	119_A	1.104	0.92
116_I	219_I	1.101	0.92
40_L	90_E	1.099	0.92
42_K	90_E	1.096	0.92
244_A	247_E	1.095	0.92
208_V	236_L	1.089	0.92
72_W	75_L	1.088	0.92
12_L	16_V	1.084	0.92
39_Q	42_K	1.080	0.92
39_Q	138_T	1.073	0.91
16_V	57_L	1.063	0.91
178_N	230_V	1.062	0.91
115_A	118_K	1.056	0.91
118_K	157_E	1.054	0.90
29_I	72_W	1.046	0.90
85_L	95_G	1.044	0.90
134_I	253_F	1.036	0.90
161_N	164_I	1.035	0.90
119_A	160_I	1.028	0.89
115_A	156_S	1.025	0.89
69_A	74_F	1.025	0.89
27_K	71_T	1.022	0.89
148_I	198_K	1.020	0.89
152_A	181_I	1.015	0.89
50_V	53_A	1.007	0.88
148_I	185_A	1.003	0.88
66_M	104_P	1.002	0.88
35_T	43_G	1.001	0.88
187_Y	218_T	1.000	0.88
52_M	55_Q	0.999	0.88
120_I	123_M	0.996	0.88
36_K	43_G	0.983	0.87
217_L	252_E	0.978	0.87
72_W	84_E	0.978	0.87
217_L	232_K	0.976	0.87
143_Y	157_E	0.975	0.87
191_S	212_E	0.973	0.87
149_P	182_A	0.971	0.86
78_I	85_L	0.968	0.86
11_Y	58_G	0.962	0.86
246_K	250_E	0.939	0.85
90_E	94_R	0.939	0.85
113_I	249_L	0.936	0.84
122_Y	128_I	0.934	0.84
161_N	168_P	0.932	0.84
31_V	37_A	0.909	0.83
47_I	127_R	0.907	0.82
210_I	216_S	0.904	0.82
14_N	73_G	0.893	0.81
122_Y	126_R	0.889	0.81
144_I	182_A	0.886	0.81
69_A	72_W	0.886	0.81
14_N	22_W	0.877	0.80
208_V	211_S	0.874	0.80
188_L	202_T	0.873	0.80
61_T	64_W	0.872	0.80
46_V	62_L	0.869	0.80
174_V	181_I	0.868	0.80
116_I	120_I	0.865	0.79
22_W	72_W	0.864	0.79
111_K	115_A	0.862	0.79
54_S	91_Q	0.853	0.78
41_L	45_V	0.852	0.78
13_G	16_V	0.848	0.78
83_P	90_E	0.848	0.78
24_V	97_F	0.847	0.78
134_I	176_M	0.847	0.78
133_T	173_A	0.843	0.78
34_G	139_G	0.843	0.78
90_E	142_D	0.842	0.78
81_F	89_L	0.822	0.76
125_K	191_S	0.821	0.76
21_V	73_G	0.818	0.75
112_T	179_N	0.818	0.75
250_E	254_K	0.812	0.75
179_N	210_I	0.809	0.75
39_Q	139_G	0.808	0.75
25_I	29_I	0.808	0.75
200_L	236_L	0.807	0.74
13_G	58_G	0.804	0.74
50_V	66_M	0.803	0.74
85_L	184_A	0.802	0.74
50_V	62_L	0.801	0.74
150_L	180_E	0.799	0.74
81_F	189_P	0.797	0.74
136_R	253_F	0.784	0.72
76_A	85_L	0.783	0.72
18_I	162_I	0.779	0.72
73_G	78_I	0.776	0.72
132_L	219_I	0.776	0.72
230_V	245_L	0.775	0.71
169_L	184_A	0.772	0.71
139_G	145_E	0.762	0.70
20_L	157_E	0.757	0.70
55_Q	63_Q	0.755	0.69
121_N	240_L	0.755	0.69
28_L	191_S	0.751	0.69
31_V	39_Q	0.746	0.69
68_Q	78_I	0.746	0.69
45_V	49_L	0.742	0.68
42_K	83_P	0.742	0.68
61_T	165_P	0.741	0.68
118_K	242_E	0.735	0.67
136_R	232_K	0.731	0.67
20_L	27_K	0.728	0.67
128_I	160_I	0.723	0.66
51_R	73_G	0.715	0.65
18_I	134_I	0.715	0.65
126_R	160_I	0.713	0.65
200_L	225_T	0.713	0.65
29_I	218_T	0.712	0.65
146_T	186_C	0.710	0.65
140_M	183_A	0.710	0.65
25_I	247_E	0.707	0.64
244_A	248_M	0.705	0.64
219_I	249_L	0.702	0.64
89_L	128_I	0.702	0.64
79_I	141_G	0.702	0.64
88_A	202_T	0.699	0.64
76_A	225_T	0.698	0.63
44_I	79_I	0.698	0.63
237_H	244_A	0.690	0.63
51_R	63_Q	0.690	0.63
54_S	185_A	0.686	0.62
116_I	124_A	0.686	0.62
112_T	116_I	0.685	0.62
47_I	77_I	0.685	0.62
14_N	59_L	0.683	0.62
87_R	188_L	0.681	0.62
240_L	244_A	0.681	0.62
132_L	174_V	0.679	0.61
162_I	174_V	0.671	0.60
127_R	166_N	0.670	0.60
90_E	161_N	0.670	0.60
105_V	256_N	0.669	0.60
12_L	52_M	0.666	0.60
80_I	92_L	0.666	0.60
40_L	87_R	0.665	0.60
32_I	212_E	0.665	0.60
37_A	82_Q	0.665	0.60
28_L	58_G	0.663	0.59
186_C	199_E	0.662	0.59
76_A	84_E	0.661	0.59
36_K	94_R	0.659	0.59
104_P	120_I	0.659	0.59
148_I	167_T	0.658	0.59
51_R	70_I	0.658	0.59
149_P	153_K	0.655	0.59
227_G	238_R	0.655	0.59
45_V	63_Q	0.654	0.58
35_T	84_E	0.650	0.58
115_A	119_A	0.648	0.58
106_E	235_D	0.648	0.58
147_G	186_C	0.643	0.57
11_Y	19_L	0.643	0.57
34_G	37_A	0.643	0.57
141_G	145_E	0.636	0.56
169_L	183_A	0.636	0.56
29_I	210_I	0.635	0.56
135_E	200_L	0.634	0.56
144_I	175_I	0.633	0.56
59_L	165_P	0.632	0.56
21_V	62_L	0.630	0.56
38_V	48_V	0.627	0.55
48_V	55_Q	0.627	0.55
36_K	138_T	0.626	0.55
21_V	25_I	0.623	0.55
37_A	78_I	0.622	0.55
91_Q	95_G	0.622	0.55
35_T	64_W	0.621	0.55
68_Q	71_T	0.617	0.54
193_S	212_E	0.617	0.54
116_I	132_L	0.616	0.54
119_A	208_V	0.616	0.54
109_Q	154_V	0.615	0.54
70_I	77_I	0.615	0.54
21_V	26_Y	0.614	0.54
150_L	184_A	0.613	0.54
117_T	132_L	0.612	0.53
56_Y	60_S	0.611	0.53
167_T	185_A	0.610	0.53
183_A	188_L	0.610	0.53
131_L	193_S	0.608	0.53
84_E	189_P	0.608	0.53
89_L	135_E	0.608	0.53
14_N	18_I	0.604	0.52
41_L	80_I	0.601	0.52
42_K	84_E	0.597	0.52
233_N	240_L	0.597	0.52
16_V	45_V	0.595	0.51
136_R	252_E	0.593	0.51
17_D	62_L	0.593	0.51
24_V	65_L	0.593	0.51
116_I	255_K	0.591	0.51
119_A	150_L	0.591	0.51
82_Q	92_L	0.588	0.51
139_G	214_T	0.586	0.50
123_M	165_P	0.586	0.50
127_R	140_M	0.585	0.50
17_D	31_V	0.585	0.50
237_H	240_L	0.584	0.50
213_V	218_T	0.583	0.50
29_I	61_T	0.580	0.50
161_N	199_E	0.580	0.50
82_Q	87_R	0.580	0.50
25_I	193_S	0.573	0.49
29_I	80_I	0.572	0.49
103_T	106_E	0.571	0.49
150_L	169_L	0.570	0.48
49_L	152_A	0.569	0.48
56_Y	67_D	0.569	0.48
65_L	72_W	0.568	0.48
124_A	239_E	0.566	0.48
77_I	80_I	0.566	0.48
158_L	184_A	0.565	0.48
219_I	230_V	0.564	0.48
89_L	93_G	0.564	0.48
146_T	187_Y	0.562	0.47
51_R	78_I	0.561	0.47
83_P	86_R	0.560	0.47
43_G	81_F	0.560	0.47
32_I	37_A	0.559	0.47
43_G	89_L	0.559	0.47
184_A	210_I	0.558	0.47
228_V	245_L	0.557	0.47
89_L	130_A	0.555	0.47
127_R	161_N	0.552	0.46
126_R	165_P	0.552	0.46
219_I	228_V	0.551	0.46
146_T	225_T	0.551	0.46
216_S	231_A	0.549	0.46
169_L	205_R	0.549	0.46
151_N	182_A	0.548	0.46
11_Y	53_A	0.547	0.46
45_V	216_S	0.547	0.46
197_S	238_R	0.547	0.46
85_L	192_E	0.546	0.46
116_I	241_T	0.545	0.45
123_M	148_I	0.543	0.45
81_F	93_G	0.540	0.45
22_W	61_T	0.539	0.45
147_G	183_A	0.538	0.45
40_L	69_A	0.537	0.45
227_G	240_L	0.532	0.44
22_W	133_T	0.532	0.44
87_R	145_E	0.531	0.44
55_Q	152_A	0.529	0.44
124_A	147_G	0.529	0.44
241_T	257_T	0.528	0.43
15_A	235_D	0.528	0.43
66_M	217_L	0.527	0.43
248_M	252_E	0.526	0.43
69_A	137_D	0.526	0.43
31_V	38_V	0.525	0.43
140_M	214_T	0.525	0.43
144_I	211_S	0.525	0.43
154_V	255_K	0.524	0.43
88_A	190_L	0.523	0.43
28_L	137_D	0.521	0.43
241_T	256_N	0.521	0.43
116_I	176_M	0.519	0.42
157_E	165_P	0.519	0.42
148_I	160_I	0.519	0.42
24_V	96_R	0.519	0.42
88_A	197_S	0.518	0.42
34_G	68_Q	0.518	0.42
66_M	74_F	0.516	0.42
69_A	76_A	0.514	0.42
145_E	156_S	0.514	0.42
176_M	181_I	0.512	0.42
55_Q	58_G	0.511	0.41
85_L	96_R	0.511	0.41
63_Q	66_M	0.511	0.41
73_G	214_T	0.510	0.41
103_T	258_R	0.509	0.41
46_V	49_L	0.509	0.41
229_S	237_H	0.508	0.41
107_E	178_N	0.507	0.41
123_M	149_P	0.507	0.41
12_L	258_R	0.506	0.41
117_T	120_I	0.505	0.41
71_T	139_G	0.505	0.41
148_I	187_Y	0.504	0.41
32_I	35_T	0.504	0.41
143_Y	210_I	0.503	0.41
69_A	73_G	0.502	0.40
97_F	236_L	0.502	0.40
62_L	178_N	0.502	0.40
166_N	193_S	0.502	0.40
184_A	205_R	0.500	0.40

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4rv7A	1	0.5897	100	0.392	Contact Map
2fb5A	3	0.6813	100	0.473	Contact Map
3c1yA	5	0.6154	100	0.531	Contact Map
3k6eA	2	0.5641	24.6	0.968	Contact Map
1yavA	2	0.5018	22.6	0.969	Contact Map
3hzqA	3	0.1429	12.1	0.972	Contact Map
4mewA	1	0.4615	9.3	0.974	Contact Map
4xnvA	1	0.3223	8.7	0.974	Contact Map
2emqA	2	0.4982	8.5	0.974	Contact Map
1vz0A	3	0.4396	7.4	0.975	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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