GREMLIN Database
YBBJ - Uncharacterized N-acetyltransferase YbbJ
UniProt: Q45583 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 160 (140)
Sequences: 1387 (1055)
Seq/√Len: 89.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
99_K136_K3.3661.00
34_P87_S3.1881.00
52_I101_A3.1441.00
60_G88_L2.9431.00
54_K97_Y2.8011.00
27_D93_H2.8001.00
25_N28_K2.5901.00
49_P61_F2.5061.00
18_L58_P2.3891.00
18_L51_V2.3101.00
53_L58_P2.2951.00
24_T90_A2.2831.00
62_F105_L2.2781.00
8_S53_L2.2601.00
57_L92_H2.2071.00
52_I60_G2.1921.00
123_V152_E2.1041.00
39_S43_G2.0601.00
59_V97_Y2.0421.00
92_H95_K1.9591.00
88_L97_Y1.8381.00
123_V131_K1.8121.00
127_N130_A1.7871.00
131_K135_M1.7661.00
50_V108_F1.7601.00
21_F87_S1.7161.00
22_T90_A1.7081.00
32_S85_S1.6851.00
41_A49_P1.6421.00
6_S56_D1.4831.00
37_V85_S1.4751.00
102_M137_S1.4470.99
131_K141_D1.3770.99
83_L102_M1.3480.99
10_Y51_V1.3280.99
83_L121_L1.3240.99
121_L134_Y1.3160.99
37_V63_I1.2940.99
130_A133_L1.2870.99
23_L27_D1.2730.99
135_M141_D1.2430.98
50_V64_L1.2310.98
59_V101_A1.2310.98
47_R84_S1.2260.98
130_A134_Y1.2250.98
40_Q85_S1.2170.98
79_F117_D1.2120.98
121_L130_A1.1980.98
52_I88_L1.1960.98
100_K103_L1.1720.97
82_L120_I1.1660.97
122_A146_R1.1650.97
103_L107_A1.1640.97
81_L116_C1.1600.97
107_A110_S1.1590.97
34_P85_S1.1570.97
47_R65_H1.1540.97
8_S14_H1.1440.97
65_H82_L1.1330.97
106_P110_S1.1330.97
99_K103_L1.1240.97
19_Q35_K1.1230.97
34_P37_V1.1210.97
53_L56_D1.1100.96
86_L102_M1.1070.96
14_H53_L1.1010.96
37_V61_F1.0970.96
15_L19_Q1.0910.96
31_T87_S1.0850.96
11_K14_H1.0690.96
7_L101_A1.0650.96
106_P119_I1.0130.94
104_L107_A1.0120.94
21_F34_P0.9960.94
12_P45_Q0.9890.93
65_H84_S0.9880.93
5_I54_K0.9760.93
16_P36_E0.9710.93
7_L52_I0.9700.93
99_K133_L0.9500.92
86_L101_A0.9460.92
80_A118_E0.9430.92
118_E153_Q0.9200.91
59_V92_H0.9190.91
15_L43_G0.9120.90
144_R151_G0.9070.90
132_H135_M0.9060.90
63_I85_S0.9060.90
133_L137_S0.9030.90
109_V116_C0.9020.90
37_V87_S0.8960.89
77_N118_E0.8950.89
17_E57_L0.8930.89
29_R126_L0.8900.89
63_I84_S0.8870.89
32_S84_S0.8560.87
127_N133_L0.8560.87
121_L127_N0.8320.86
10_Y14_H0.8250.85
51_V58_P0.8200.85
60_G93_H0.8070.84
116_C119_I0.8000.83
98_A129_R0.7820.82
17_E58_P0.7740.81
54_K95_K0.7650.81
105_L109_V0.7640.80
64_L105_L0.7640.80
54_K100_K0.7620.80
54_K59_V0.7580.80
15_L36_E0.7500.79
124_N152_E0.7480.79
8_S11_K0.7400.78
64_L84_S0.7370.78
44_I47_R0.7340.78
10_Y98_A0.7190.76
128_I132_H0.7130.76
82_L122_A0.7050.75
77_N80_A0.7040.75
83_L86_L0.7040.75
124_N153_Q0.7010.75
82_L151_G0.6980.74
66_A115_W0.6940.74
30_F124_N0.6930.74
13_E17_E0.6910.73
115_W129_R0.6890.73
137_S148_G0.6870.73
34_P61_F0.6760.72
39_S42_L0.6670.71
141_D145_R0.6670.71
85_S149_P0.6550.69
118_E143_G0.6500.69
31_T121_L0.6450.68
47_R63_I0.6430.68
83_L137_S0.6380.67
5_I97_Y0.6380.67
103_L106_P0.6330.67
133_L136_K0.6330.67
26_D95_K0.6320.67
141_D152_E0.6310.67
39_S44_I0.6280.66
107_A111_G0.6260.66
6_S104_L0.6250.66
145_R152_E0.6230.66
65_H146_R0.6220.65
82_L121_L0.6180.65
48_Y112_Y0.6170.65
88_L93_H0.6140.64
17_E20_S0.6140.64
31_T49_P0.6050.63
18_L34_P0.6040.63
98_A149_P0.6030.63
26_D29_R0.6020.63
80_A144_R0.6000.63
99_K105_L0.6000.63
50_V82_L0.6000.63
5_I59_V0.5990.63
46_D67_S0.5890.61
89_T139_F0.5880.61
17_E54_K0.5850.61
55_D111_G0.5840.61
15_L44_I0.5800.60
14_H98_A0.5750.59
124_N151_G0.5730.59
10_Y58_P0.5720.59
50_V62_F0.5720.59
18_L86_L0.5680.59
64_L123_V0.5650.58
17_E103_L0.5640.58
31_T85_S0.5630.58
23_L34_P0.5590.57
65_H105_L0.5590.57
22_T35_K0.5580.57
31_T124_N0.5540.57
29_R141_D0.5540.57
10_Y18_L0.5510.56
5_I52_I0.5510.56
77_N120_I0.5510.56
15_L39_S0.5480.56
33_L55_D0.5470.56
52_I97_Y0.5440.55
5_I100_K0.5410.55
34_P38_L0.5390.55
7_L104_L0.5390.55
38_L98_A0.5380.54
54_K92_H0.5360.54
146_R152_E0.5350.54
48_Y64_L0.5340.54
123_V130_A0.5330.54
95_K126_L0.5320.54
12_P43_G0.5310.54
32_S40_Q0.5310.54
108_F112_Y0.5310.54
55_D128_I0.5300.53
21_F58_P0.5290.53
49_P63_I0.5270.53
129_R132_H0.5220.52
125_H152_E0.5210.52
27_D129_R0.5200.52
9_F20_S0.5180.52
62_F83_L0.5180.52
35_K39_S0.5180.52
19_Q87_S0.5170.52
29_R56_D0.5150.51
8_S57_L0.5140.51
103_L137_S0.5140.51
67_S84_S0.5130.51
46_D111_G0.5120.51
31_T63_I0.5120.51
15_L119_I0.5020.50
12_P15_L0.5000.49
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2fl4A 2 0.9125 99.8 0.554 Contact Map
3fixA 2 0.8938 99.8 0.577 Contact Map
4qc6A 1 0.9938 99.8 0.584 Contact Map
3kkwA 1 0.925 99.8 0.584 Contact Map
1tiqA 1 0.9563 99.8 0.585 Contact Map
2r7hA 2 0.9125 99.8 0.585 Contact Map
2qmlA 2 0.9812 99.8 0.586 Contact Map
1s3zA 2 0.9187 99.8 0.586 Contact Map
3tthA 5 0.9313 99.8 0.587 Contact Map
1nslA 3 0.9437 99.8 0.587 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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