YKTB - BACSU - GREMLIN Contacts

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YKTB - UPF0637 protein YktB

UniProt:	Q45498	Sequences: MTQMRFTEEDFNTFTIEGLDARMEVLKETVRPKLTALGEHFAPTLSALTGDEMFPHVAKHARRSVNPPADSWVAFANSKRGYKKLPHFQIGLWESHVFVWFAIIYESPIKEEYGKLLEVNQETITKNIPDSFVWSADHTKPGVHKQSEMDKEQLKTLFERLQTVKKAELLCGIQLQKEEVLNMNNQEFLQRIDDAFKQLAFLYRLTQKVTQA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	212 (202)
Sequences:	319 (265)
Seq/√Len:	18.7

BACSU - YKTB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
97_V	188_F	6.489	1.00
188_F	192_I	4.098	1.00
150_D	153_Q	3.396	1.00
143_V	174_Q	3.217	0.99
173_I	195_A	2.954	0.99
46_S	52_E	2.578	0.97
34_L	57_V	2.524	0.97
10_D	33_K	2.503	0.97
78_S	84_K	2.480	0.96
118_E	162_Q	2.385	0.96
78_S	85_L	2.269	0.94
5_R	185_N	2.267	0.94
136_A	157_L	2.250	0.94
173_I	191_R	2.249	0.94
179_E	182_N	2.230	0.94
27_K	31_R	2.160	0.93
94_E	141_P	2.038	0.90
12_N	177_K	1.946	0.88
180_V	183_M	1.946	0.88
118_E	159_E	1.940	0.88
37_L	41_F	1.922	0.87
176_Q	179_E	1.906	0.87
31_R	34_L	1.904	0.87
96_H	174_Q	1.890	0.86
55_P	73_V	1.876	0.86
134_W	169_L	1.818	0.84
26_L	57_V	1.736	0.81
26_L	71_S	1.732	0.81
41_F	73_V	1.696	0.79
131_S	173_I	1.694	0.79
34_L	101_F	1.688	0.79
101_F	113_Y	1.668	0.78
90_I	188_F	1.647	0.77
113_Y	117_L	1.618	0.76
180_V	187_E	1.614	0.76
6_F	71_S	1.604	0.75
176_Q	184_N	1.604	0.75
175_L	191_R	1.591	0.75
14_F	70_D	1.589	0.75
176_Q	180_V	1.587	0.75
90_I	160_R	1.574	0.74
89_Q	160_R	1.572	0.74
118_E	163_T	1.542	0.72
146_Q	171_C	1.528	0.72
155_K	159_E	1.487	0.70
53_M	77_N	1.477	0.69
95_S	161_L	1.474	0.69
16_I	25_V	1.464	0.68
128_I	146_Q	1.444	0.67
133_V	174_Q	1.443	0.67
13_T	64_S	1.423	0.66
26_L	30_V	1.413	0.65
77_N	85_L	1.413	0.65
27_K	30_V	1.411	0.65
120_N	123_T	1.391	0.64
99_V	173_I	1.385	0.64
79_K	195_A	1.382	0.64
42_A	55_P	1.374	0.63
13_T	16_I	1.352	0.62
48_L	197_K	1.342	0.61
31_R	35_T	1.336	0.61
70_D	92_L	1.327	0.60
180_V	184_N	1.303	0.59
179_E	183_M	1.300	0.59
78_S	153_Q	1.229	0.54
31_R	57_V	1.229	0.54
119_V	123_T	1.210	0.53
153_Q	156_T	1.209	0.53
27_K	139_T	1.205	0.53
39_E	99_V	1.196	0.52
159_E	163_T	1.194	0.52
89_Q	104_I	1.174	0.51
64_S	93_W	1.169	0.51
128_I	200_A	1.133	0.48
84_K	108_P	1.124	0.48
106_E	110_K	1.121	0.48
182_N	187_E	1.121	0.48
13_T	29_T	1.120	0.48
71_S	167_A	1.109	0.47
100_W	170_L	1.108	0.47
61_A	65_V	1.095	0.46
26_L	76_A	1.090	0.46
85_L	170_L	1.089	0.46
70_D	93_W	1.085	0.45
35_T	39_E	1.075	0.45
90_I	196_F	1.075	0.45
99_V	192_I	1.074	0.45
47_A	52_E	1.069	0.44
67_P	106_E	1.069	0.44
138_H	168_E	1.062	0.44
184_N	187_E	1.061	0.44
26_L	31_R	1.061	0.44
61_A	106_E	1.060	0.44
103_I	206_T	1.055	0.44
25_V	97_V	1.050	0.43
182_N	188_F	1.045	0.43
61_A	170_L	1.041	0.43
134_W	146_Q	1.036	0.42
15_T	175_L	1.020	0.41
93_W	141_P	1.010	0.41
91_G	98_F	1.006	0.41
37_L	196_F	0.997	0.40
44_T	193_D	0.989	0.40
119_V	147_S	0.989	0.40
55_P	75_F	0.988	0.40
37_L	73_V	0.985	0.39
18_G	89_Q	0.970	0.38
101_F	107_S	0.967	0.38
30_V	65_V	0.967	0.38
30_V	57_V	0.966	0.38
77_N	84_K	0.966	0.38
160_R	164_V	0.950	0.37
118_E	158_F	0.938	0.37
10_D	170_L	0.936	0.36
115_K	162_Q	0.930	0.36
99_V	175_L	0.927	0.36
114_G	162_Q	0.924	0.36
84_K	100_W	0.923	0.36
10_D	106_E	0.923	0.36
49_T	200_A	0.922	0.36
96_H	104_I	0.919	0.35
8_E	177_K	0.913	0.35
152_E	159_E	0.894	0.34
66_N	106_E	0.892	0.34
13_T	20_D	0.889	0.34
31_R	38_G	0.882	0.33
95_S	141_P	0.874	0.33
159_E	162_Q	0.873	0.33
51_D	204_R	0.870	0.33
115_K	119_V	0.868	0.33
108_P	166_K	0.866	0.33
114_G	158_F	0.863	0.32
113_Y	161_L	0.862	0.32
28_E	44_T	0.861	0.32
59_K	196_F	0.858	0.32
101_F	201_F	0.857	0.32
125_T	128_I	0.856	0.32
38_G	73_V	0.850	0.32
70_D	84_K	0.845	0.31
149_M	197_K	0.836	0.31
142_G	147_S	0.834	0.31
12_N	183_M	0.829	0.31
178_E	183_M	0.828	0.30
31_R	73_V	0.820	0.30
97_V	192_I	0.817	0.30
70_D	78_S	0.815	0.30
66_N	70_D	0.808	0.29
191_R	194_D	0.808	0.29
75_F	90_I	0.807	0.29
34_L	134_W	0.803	0.29
38_G	75_F	0.797	0.29
86_P	102_A	0.786	0.28
134_W	173_I	0.785	0.28
187_E	190_Q	0.778	0.28
27_K	55_P	0.777	0.28
66_N	99_V	0.774	0.28
18_G	104_I	0.772	0.28
5_R	53_M	0.765	0.27
107_S	161_L	0.763	0.27
44_T	197_K	0.762	0.27
41_F	75_F	0.761	0.27
158_F	169_L	0.758	0.27
88_F	110_K	0.754	0.27
158_F	195_A	0.754	0.27
12_N	15_T	0.751	0.27
134_W	171_C	0.751	0.27
34_L	55_P	0.749	0.26
51_D	77_N	0.746	0.26
7_T	185_N	0.745	0.26
109_I	116_L	0.744	0.26
5_R	192_I	0.744	0.26
61_A	102_A	0.736	0.26
19_L	168_E	0.729	0.25
103_I	161_L	0.729	0.25
4_M	126_K	0.726	0.25
127_N	154_L	0.722	0.25
90_I	193_D	0.722	0.25
123_T	127_N	0.713	0.25
19_L	138_H	0.712	0.25
59_K	86_P	0.708	0.24
181_L	184_N	0.705	0.24
134_W	158_F	0.702	0.24
36_A	52_E	0.702	0.24
175_L	182_N	0.700	0.24
102_A	170_L	0.699	0.24
27_K	35_T	0.699	0.24
30_V	157_L	0.697	0.24
33_K	106_E	0.697	0.24
150_D	202_L	0.690	0.24
99_V	109_I	0.689	0.24
20_D	127_N	0.689	0.24
16_I	21_A	0.681	0.23
90_I	97_V	0.680	0.23
104_I	114_G	0.678	0.23
14_F	78_S	0.678	0.23
17_E	112_E	0.675	0.23
190_Q	194_D	0.673	0.23
76_A	79_K	0.661	0.22
117_L	166_K	0.659	0.22
146_Q	169_L	0.658	0.22
10_D	91_G	0.657	0.22
37_L	55_P	0.656	0.22
31_R	89_Q	0.655	0.22
85_L	143_V	0.654	0.22
104_I	161_L	0.653	0.22
41_F	90_I	0.652	0.22
132_F	198_Q	0.652	0.22
98_F	106_E	0.651	0.22
14_F	17_E	0.650	0.22
10_D	59_K	0.647	0.22
92_L	174_Q	0.646	0.22
145_K	155_K	0.643	0.22
107_S	141_P	0.641	0.22
141_P	161_L	0.641	0.22
38_G	55_P	0.641	0.22
103_I	107_S	0.637	0.21
8_E	39_E	0.635	0.21
8_E	181_L	0.633	0.21
197_K	204_R	0.630	0.21
202_L	205_L	0.628	0.21
28_E	115_K	0.626	0.21
33_K	105_Y	0.626	0.21
33_K	170_L	0.624	0.21
16_I	44_T	0.622	0.21
34_L	102_A	0.617	0.21
15_T	94_E	0.617	0.21
115_K	122_E	0.616	0.20
70_D	106_E	0.613	0.20
179_E	184_N	0.613	0.20
35_T	73_V	0.611	0.20
96_H	141_P	0.610	0.20
119_V	126_K	0.609	0.20
183_M	192_I	0.609	0.20
154_L	204_R	0.605	0.20
39_E	131_S	0.603	0.20
64_S	69_A	0.603	0.20
101_F	161_L	0.602	0.20
65_V	69_A	0.602	0.20
23_M	88_F	0.601	0.20
90_I	192_I	0.599	0.20
36_A	69_A	0.599	0.20
48_L	53_M	0.598	0.20
158_F	171_C	0.598	0.20
25_V	114_G	0.594	0.20
128_I	195_A	0.593	0.20
10_D	61_A	0.591	0.19
145_K	163_T	0.589	0.19
105_Y	110_K	0.588	0.19
13_T	35_T	0.585	0.19
35_T	100_W	0.585	0.19
104_I	172_G	0.583	0.19
49_T	84_K	0.582	0.19
38_G	204_R	0.578	0.19
4_M	123_T	0.578	0.19
160_R	167_A	0.577	0.19
8_E	117_L	0.577	0.19
27_K	59_K	0.573	0.19
134_W	157_L	0.573	0.19
55_P	84_K	0.572	0.19
111_E	120_N	0.571	0.19
17_E	150_D	0.571	0.19
40_H	124_I	0.568	0.19
92_L	97_V	0.568	0.19
96_H	170_L	0.566	0.19
112_E	193_D	0.559	0.18
100_W	166_K	0.558	0.18
123_T	183_M	0.556	0.18
9_E	169_L	0.553	0.18
39_E	155_K	0.551	0.18
31_R	104_I	0.549	0.18
130_D	133_V	0.547	0.18
31_R	101_F	0.547	0.18
15_T	184_N	0.544	0.18
26_L	120_N	0.544	0.18
126_K	190_Q	0.540	0.18
92_L	160_R	0.539	0.18
12_N	29_T	0.539	0.18
47_A	75_F	0.537	0.17
121_Q	152_E	0.535	0.17
12_N	122_E	0.534	0.17
135_S	164_V	0.533	0.17
144_H	167_A	0.529	0.17
120_N	153_Q	0.528	0.17
30_V	45_L	0.528	0.17
31_R	55_P	0.527	0.17
57_V	163_T	0.527	0.17
57_V	94_E	0.524	0.17
178_E	198_Q	0.523	0.17
86_P	170_L	0.520	0.17
192_I	201_F	0.519	0.17
53_M	103_I	0.518	0.17
120_N	205_L	0.518	0.17
12_N	167_A	0.516	0.17
178_E	187_E	0.511	0.17
86_P	138_H	0.509	0.16
19_L	86_P	0.508	0.16
73_V	103_I	0.507	0.16
132_F	182_N	0.505	0.16
44_T	53_M	0.505	0.16
84_K	170_L	0.504	0.16
181_L	194_D	0.502	0.16
95_S	122_E	0.501	0.16
33_K	59_K	0.500	0.16

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2a8eA	1	0.9906	100	0.047	Contact Map
3mqzA	1	0.9245	100	0.144	Contact Map
1lypA	1	0.1509	29.5	0.965	Contact Map
2bmmA	1	0.5189	27.5	0.966	Contact Map
2qrwA	7	0.5236	20.9	0.968	Contact Map
2xykA	1	0.5425	18.8	0.968	Contact Map
3aq9A	1	0.5094	17.7	0.969	Contact Map
1o6dA	2	0.6179	15.5	0.97	Contact Map
3j7ya	1	0.1792	12	0.971	Contact Map
4h7wA	1	0.5094	10.3	0.972	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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