XYND - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

XYND - Arabinoxylan arabinofuranohydrolase

UniProt:	Q45071	Sequences: MRKKCSVCLWILVLLLSCLSGKSAYAATSTTIAKHIGNSNPLIDHHLGADPVALTYNGRVYIYMSSDDYEYNSNGTIKDNSFANLNRVFVISSADMVNWTDHGAIPVAGANGANGGRGIAKWAGASWAPSIAVKKINGKDKFFLYFANSGGGIGVLTADSPIGPWTDPIGKPLVTPSTPGMSGVVWLFDPAVFVDDDGTGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGSASTIDAPFMFEDSGLHKYNGTYYYSYCINFGGTHPADKPPGEIGYMTSSSPMGPFTYRGHFLKNPGAFFGGGGNNHHAVFNFKNEWYVVYHAQTVSSALFGAGKGYRSPHINKLVHNADGSIQEVAANYAGVTQISNLNPYNRVEAETFAWNGRILTEKSTAPGGPVNNQHVTSIQNGDWIAVGNADFGAGGARSFKANVASTLGGKIEVRLDSADGKLVGTLNVPSTGGAQTWREIETAVSGATGVHKVFFVFTGTGTGNLFNFDYWQFTQR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	513 (408)
Sequences:	3641 (2803)
Seq/√Len:	138.8

ECOLI - YAGH
BACSU - XYND XYNB EABN2 EABN1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
199_T	229_K	7.326	1.00
59_R	92_S	6.564	1.00
261_T	289_S	5.744	1.00
95_D	98_N	5.596	1.00
141_K	159_D	5.183	1.00
158_A	164_P	4.649	1.00
196_D	257_K	4.576	1.00
325_E	353_K	4.014	1.00
322_F	325_E	3.695	1.00
59_R	94_A	3.463	1.00
261_T	287_T	3.074	1.00
58_G	94_A	3.040	1.00
141_K	157_T	3.001	1.00
227_V	292_M	2.809	1.00
63_Y	165_W	2.785	1.00
446_G	450_V	2.778	1.00
319_V	354_L	2.730	1.00
229_K	238_V	2.718	1.00
242_S	292_M	2.439	1.00
397_T	402_A	2.370	1.00
105_I	144_L	2.358	1.00
291_P	295_F	2.357	1.00
321_N	324_N	2.324	1.00
287_T	361_S	2.288	1.00
88_V	144_L	2.278	1.00
231_G	236_S	2.241	1.00
60_V	322_F	2.149	1.00
446_G	449_E	2.146	1.00
259_N	360_G	2.135	1.00
265_S	285_Y	2.090	1.00
42_L	329_V	2.085	1.00
134_K	137_N	2.060	1.00
228_I	237_V	2.032	1.00
131_I	144_L	2.024	1.00
387_E	390_A	1.975	1.00
433_A	437_K	1.969	1.00
321_N	326_W	1.935	1.00
60_V	93_S	1.916	1.00
468_T	473_T	1.914	1.00
330_Y	352_N	1.903	1.00
63_Y	131_I	1.893	1.00
193_F	255_L	1.885	1.00
110_A	167_D	1.883	1.00
203_Y	295_F	1.859	1.00
231_G	234_M	1.814	1.00
55_T	58_G	1.806	1.00
108_A	111_N	1.792	1.00
290_S	295_F	1.771	1.00
231_G	235_T	1.766	1.00
391_W	397_T	1.755	1.00
92_S	100_T	1.736	1.00
328_V	364_E	1.696	1.00
88_V	146_F	1.690	1.00
408_N	422_A	1.682	1.00
56_Y	142_F	1.662	1.00
357_N	361_S	1.655	1.00
425_N	428_F	1.629	1.00
158_A	163_G	1.607	1.00
92_S	162_I	1.580	1.00
160_S	164_P	1.573	1.00
121_K	124_G	1.569	1.00
466_P	469_G	1.552	1.00
464_N	476_E	1.548	1.00
61_Y	162_I	1.545	1.00
203_Y	227_V	1.540	1.00
447_K	450_V	1.502	1.00
38_N	327_Y	1.501	1.00
258_Y	356_H	1.497	1.00
391_W	395_I	1.496	1.00
394_R	397_T	1.487	1.00
409_N	506_D	1.485	1.00
257_K	260_G	1.464	1.00
381_Y	509_Q	1.460	1.00
391_W	396_L	1.457	1.00
327_Y	353_K	1.456	1.00
370_A	373_T	1.456	1.00
92_S	102_H	1.449	1.00
204_A	228_I	1.448	1.00
466_P	472_Q	1.440	1.00
407_V	507_Y	1.439	1.00
250_F	266_Y	1.421	1.00
126_S	146_F	1.403	1.00
460_V	480_A	1.392	1.00
260_G	289_S	1.386	1.00
265_S	283_I	1.385	1.00
194_V	200_G	1.380	1.00
88_V	126_S	1.379	1.00
288_S	295_F	1.369	1.00
230_L	235_T	1.367	1.00
258_Y	360_G	1.361	1.00
227_V	244_I	1.359	1.00
201_Y	292_M	1.356	1.00
288_S	294_P	1.348	1.00
375_I	378_L	1.344	1.00
399_K	402_A	1.335	1.00
379_N	382_N	1.335	1.00
227_V	291_P	1.335	1.00
443_T	446_G	1.334	1.00
386_A	389_F	1.328	1.00
356_H	362_I	1.326	1.00
155_V	235_T	1.324	1.00
56_Y	133_V	1.319	1.00
197_D	257_K	1.318	1.00
231_G	238_V	1.313	1.00
313_G	333_Q	1.298	1.00
158_A	162_I	1.290	1.00
285_Y	362_I	1.289	1.00
256_H	265_S	1.281	1.00
414_S	419_D	1.281	1.00
137_N	198_G	1.280	1.00
437_K	440_V	1.258	1.00
283_I	317_H	1.249	1.00
229_K	239_G	1.247	1.00
53_A	329_V	1.243	1.00
56_Y	59_R	1.242	1.00
283_I	328_V	1.241	1.00
106_P	156_L	1.240	1.00
193_F	262_Y	1.239	1.00
289_S	296_T	1.238	1.00
468_T	472_Q	1.238	1.00
395_I	398_E	1.236	1.00
408_N	412_V	1.226	1.00
106_P	126_S	1.226	1.00
257_K	262_Y	1.225	1.00
380_P	384_V	1.225	1.00
366_A	369_Y	1.223	1.00
447_K	451_R	1.218	1.00
446_G	451_R	1.216	1.00
54_L	142_F	1.214	1.00
434_R	437_K	1.198	1.00
412_V	419_D	1.197	1.00
384_V	389_F	1.196	1.00
382_N	387_E	1.196	1.00
144_L	156_L	1.196	1.00
382_N	390_A	1.195	1.00
357_N	363_Q	1.195	1.00
426_A	429_G	1.187	1.00
287_T	296_T	1.183	1.00
368_N	371_G	1.179	1.00
384_V	387_E	1.179	1.00
434_R	438_A	1.176	1.00
332_A	350_H	1.176	1.00
160_S	165_W	1.169	0.99
391_W	402_A	1.169	0.99
130_S	191_A	1.165	0.99
203_Y	255_L	1.165	0.99
389_F	397_T	1.163	0.99
89_F	104_A	1.162	0.99
256_H	319_V	1.159	0.99
64_M	252_D	1.151	0.99
195_D	257_K	1.149	0.99
396_L	399_K	1.146	0.99
422_A	427_D	1.144	0.99
462_T	476_E	1.140	0.99
378_L	382_N	1.137	0.99
228_I	241_A	1.136	0.99
203_Y	291_P	1.132	0.99
393_G	397_T	1.126	0.99
387_E	391_W	1.124	0.99
206_G	226_R	1.123	0.99
382_N	393_G	1.123	0.99
466_P	474_W	1.123	0.99
391_W	394_R	1.119	0.99
466_P	473_T	1.116	0.99
255_L	295_F	1.115	0.99
433_A	438_A	1.090	0.99
410_Q	414_S	1.085	0.99
449_E	466_P	1.084	0.99
333_Q	343_G	1.084	0.99
132_A	194_V	1.082	0.99
433_A	440_V	1.082	0.99
424_G	428_F	1.078	0.99
432_G	437_K	1.071	0.99
88_V	156_L	1.068	0.99
285_Y	301_F	1.067	0.99
133_V	138_G	1.066	0.99
233_D	236_S	1.065	0.99
63_Y	161_P	1.064	0.99
448_I	451_R	1.064	0.99
230_L	238_V	1.061	0.99
49_A	67_D	1.057	0.99
93_S	96_M	1.056	0.99
129_P	144_L	1.056	0.99
111_N	156_L	1.054	0.99
389_F	393_G	1.054	0.99
367_A	370_A	1.051	0.99
263_Y	285_Y	1.050	0.99
370_A	374_Q	1.050	0.99
406_P	423_V	1.042	0.99
103_G	164_P	1.042	0.99
411_H	421_I	1.041	0.99
317_H	328_V	1.039	0.99
395_I	402_A	1.039	0.99
406_P	508_W	1.037	0.99
408_N	421_I	1.035	0.99
432_G	438_A	1.035	0.99
396_L	402_A	1.033	0.99
247_P	282_E	1.032	0.99
230_L	234_M	1.031	0.99
381_Y	384_V	1.026	0.99
384_V	393_G	1.020	0.99
432_G	435_S	1.019	0.99
117_R	120_A	1.017	0.99
227_V	295_F	1.015	0.99
66_S	89_F	1.015	0.99
228_I	239_G	1.009	0.98
145_Y	202_L	1.005	0.98
329_V	351_I	0.998	0.98
379_N	384_V	0.997	0.98
287_T	356_H	0.996	0.98
47_L	91_I	0.996	0.98
382_N	385_E	0.982	0.98
258_Y	321_N	0.978	0.98
478_E	482_S	0.977	0.98
395_I	401_T	0.976	0.98
102_H	162_I	0.973	0.98
288_S	293_G	0.970	0.98
393_G	399_K	0.969	0.98
318_A	329_V	0.967	0.98
406_P	422_A	0.961	0.98
66_S	87_R	0.958	0.98
268_I	284_G	0.955	0.98
366_A	372_V	0.947	0.98
393_G	402_A	0.946	0.98
355_V	363_Q	0.945	0.98
414_S	421_I	0.941	0.98
354_L	362_I	0.939	0.98
425_N	429_G	0.937	0.98
411_H	422_A	0.930	0.97
392_N	396_L	0.927	0.97
314_N	332_A	0.926	0.97
238_V	241_A	0.926	0.97
365_V	368_N	0.925	0.97
484_A	490_V	0.916	0.97
408_N	411_H	0.915	0.97
290_S	294_P	0.911	0.97
147_A	153_I	0.907	0.97
101_D	104_A	0.907	0.97
478_E	481_V	0.906	0.97
386_A	390_A	0.901	0.97
404_G	408_N	0.901	0.97
38_N	97_V	0.900	0.97
55_T	321_N	0.900	0.97
145_Y	234_M	0.897	0.97
366_A	370_A	0.895	0.97
326_W	356_H	0.893	0.97
389_F	399_K	0.889	0.97
394_R	398_E	0.889	0.97
436_F	439_N	0.888	0.97
368_N	373_T	0.884	0.96
239_G	244_I	0.884	0.96
158_A	165_W	0.879	0.96
287_T	298_R	0.877	0.96
382_N	389_F	0.874	0.96
497_T	501_N	0.866	0.96
445_G	449_E	0.866	0.96
147_A	190_P	0.866	0.96
366_A	373_T	0.865	0.96
412_V	421_I	0.864	0.96
385_E	389_F	0.863	0.96
239_G	242_S	0.859	0.96
491_F	505_F	0.858	0.96
406_P	410_Q	0.854	0.96
352_N	364_E	0.853	0.96
393_G	396_L	0.851	0.96
134_K	138_G	0.848	0.96
414_S	422_A	0.846	0.95
282_E	305_P	0.844	0.95
412_V	417_N	0.843	0.95
492_F	505_F	0.840	0.95
390_A	393_G	0.837	0.95
63_Y	105_I	0.835	0.95
115_G	119_I	0.835	0.95
193_F	197_D	0.834	0.95
393_G	398_E	0.832	0.95
303_K	306_G	0.830	0.95
405_G	411_H	0.830	0.95
134_K	194_V	0.826	0.95
53_A	318_A	0.824	0.95
253_S	264_Y	0.824	0.95
389_F	392_N	0.824	0.95
408_N	414_S	0.822	0.95
290_S	293_G	0.821	0.95
385_E	506_D	0.819	0.95
119_I	122_W	0.818	0.95
400_S	403_P	0.818	0.95
258_Y	326_W	0.818	0.95
445_G	450_V	0.818	0.95
156_L	168_P	0.817	0.95
394_R	402_A	0.817	0.95
301_F	362_I	0.817	0.95
103_G	107_V	0.814	0.94
63_Y	144_L	0.807	0.94
195_D	198_G	0.807	0.94
148_N	151_G	0.807	0.94
395_I	400_S	0.803	0.94
146_F	156_L	0.803	0.94
409_N	507_Y	0.800	0.94
415_I	419_D	0.799	0.94
108_A	167_D	0.797	0.94
367_A	374_Q	0.793	0.94
63_Y	129_P	0.793	0.94
389_F	394_R	0.793	0.94
396_L	400_S	0.792	0.94
65_S	129_P	0.792	0.94
422_A	438_A	0.792	0.94
116_G	119_I	0.791	0.94
443_T	447_K	0.789	0.93
319_V	326_W	0.784	0.93
393_G	401_T	0.784	0.93
54_L	131_I	0.784	0.93
201_Y	229_K	0.783	0.93
105_I	156_L	0.776	0.93
91_I	101_D	0.773	0.93
463_L	466_P	0.773	0.93
369_Y	373_T	0.771	0.93
225_A	266_Y	0.769	0.93
96_M	329_V	0.766	0.92
437_K	441_A	0.764	0.92
404_G	407_V	0.764	0.92
474_W	478_E	0.763	0.92
429_G	434_R	0.760	0.92
375_I	379_N	0.760	0.92
406_P	414_S	0.760	0.92
49_A	347_R	0.758	0.92
63_Y	90_V	0.754	0.92
366_A	371_G	0.753	0.92
155_V	230_L	0.753	0.92
428_F	432_G	0.751	0.92
322_F	327_Y	0.749	0.92
412_V	418_G	0.749	0.92
387_E	397_T	0.747	0.91
157_T	166_T	0.747	0.91
159_D	164_P	0.743	0.91
95_D	99_W	0.743	0.91
256_H	318_A	0.742	0.91
311_G	350_H	0.741	0.91
380_P	383_R	0.739	0.91
326_W	354_L	0.738	0.91
313_G	343_G	0.735	0.91
421_I	427_D	0.734	0.91
64_M	91_I	0.734	0.91
130_S	254_G	0.731	0.91
137_N	143_F	0.728	0.90
296_T	361_S	0.727	0.90
281_G	315_N	0.727	0.90
42_L	53_A	0.727	0.90
199_T	238_V	0.726	0.90
409_N	422_A	0.725	0.90
52_V	316_H	0.724	0.90
394_R	488_H	0.722	0.90
410_Q	503_F	0.722	0.90
88_V	129_P	0.719	0.90
50_D	128_A	0.718	0.90
227_V	255_L	0.717	0.90
134_K	200_G	0.715	0.90
225_A	253_S	0.714	0.90
433_A	436_F	0.713	0.89
153_I	202_L	0.713	0.89
435_S	440_V	0.710	0.89
443_T	450_V	0.709	0.89
427_D	433_A	0.709	0.89
191_A	203_Y	0.707	0.89
327_Y	351_I	0.706	0.89
59_R	102_H	0.699	0.89
321_N	325_E	0.698	0.88
137_N	141_K	0.698	0.88
167_D	172_P	0.695	0.88
55_T	59_R	0.695	0.88
57_N	92_S	0.694	0.88
267_C	281_G	0.694	0.88
258_Y	261_T	0.693	0.88
422_A	428_F	0.692	0.88
383_R	506_D	0.691	0.88
448_I	455_A	0.691	0.88
407_V	422_A	0.691	0.88
447_K	452_L	0.690	0.88
376_S	380_P	0.689	0.88
134_K	143_F	0.688	0.88
378_L	388_T	0.687	0.88
133_V	137_N	0.686	0.88
133_V	142_F	0.685	0.88
432_G	440_V	0.685	0.88
376_S	379_N	0.684	0.87
188_F	253_S	0.681	0.87
382_N	386_A	0.681	0.87
397_T	401_T	0.681	0.87
407_V	410_Q	0.678	0.87
416_Q	419_D	0.678	0.87
475_R	478_E	0.673	0.87
314_N	330_Y	0.673	0.87
247_P	297_Y	0.671	0.86
420_W	492_F	0.671	0.86
130_S	318_A	0.668	0.86
410_Q	422_A	0.667	0.86
379_N	383_R	0.666	0.86
404_G	414_S	0.666	0.86
469_G	472_Q	0.665	0.86
255_L	291_P	0.665	0.86
132_A	192_V	0.664	0.86
435_S	438_A	0.662	0.86
360_G	363_Q	0.660	0.86
430_A	434_R	0.660	0.86
415_I	418_G	0.659	0.85
291_P	294_P	0.659	0.85
391_W	403_P	0.659	0.85
91_I	252_D	0.658	0.85
409_N	414_S	0.656	0.85
406_P	409_N	0.655	0.85
261_T	288_S	0.655	0.85
265_S	354_L	0.652	0.85
267_C	317_H	0.652	0.85
412_V	422_A	0.651	0.85
100_T	376_S	0.651	0.85
407_V	509_Q	0.649	0.85
55_T	320_F	0.646	0.84
422_A	425_N	0.645	0.84
261_T	296_T	0.645	0.84
288_S	292_M	0.645	0.84
495_T	503_F	0.644	0.84
319_V	328_V	0.643	0.84
153_I	190_P	0.643	0.84
203_Y	253_S	0.643	0.84
195_D	291_P	0.642	0.84
392_N	395_I	0.640	0.84
196_D	260_G	0.639	0.84
451_R	464_N	0.638	0.84
380_P	387_E	0.637	0.83
89_F	101_D	0.637	0.83
55_T	322_F	0.636	0.83
254_G	318_A	0.636	0.83
130_S	203_Y	0.636	0.83
442_S	446_G	0.635	0.83
328_V	352_N	0.634	0.83
442_S	445_G	0.632	0.83
443_T	449_E	0.632	0.83
195_D	262_Y	0.632	0.83
204_A	241_A	0.631	0.83
390_A	394_R	0.631	0.83
406_P	421_I	0.630	0.83
156_L	165_W	0.630	0.83
202_L	252_D	0.630	0.83
118_G	121_K	0.630	0.83
463_L	478_E	0.629	0.83
436_F	441_A	0.629	0.83
300_H	303_K	0.628	0.83
436_F	440_V	0.628	0.83
107_V	164_P	0.628	0.83
365_V	373_T	0.625	0.82
283_I	286_M	0.625	0.82
374_Q	377_N	0.624	0.82
449_E	455_A	0.623	0.82
90_V	162_I	0.620	0.82
394_R	399_K	0.619	0.82
153_I	187_L	0.619	0.82
199_T	232_P	0.619	0.82
52_V	254_G	0.619	0.82
120_A	123_A	0.618	0.82
185_V	237_V	0.615	0.81
245_D	248_F	0.614	0.81
457_G	462_T	0.613	0.81
117_R	122_W	0.613	0.81
200_G	232_P	0.611	0.81
261_T	361_S	0.610	0.81
326_W	362_I	0.609	0.81
317_H	329_V	0.609	0.81
404_G	410_Q	0.609	0.81
53_A	320_F	0.608	0.81
405_G	457_G	0.607	0.80
298_R	357_N	0.606	0.80
491_F	508_W	0.604	0.80
425_N	430_A	0.604	0.80
202_L	228_I	0.604	0.80
50_D	347_R	0.603	0.80
383_R	509_Q	0.601	0.80
474_W	482_S	0.599	0.80
461_G	480_A	0.599	0.80
426_A	490_V	0.598	0.79
158_A	161_P	0.598	0.79
225_A	264_Y	0.597	0.79
435_S	439_N	0.597	0.79
298_R	361_S	0.596	0.79
419_D	422_A	0.596	0.79
415_I	421_I	0.595	0.79
298_R	363_Q	0.595	0.79
395_I	403_P	0.594	0.79
93_S	99_W	0.594	0.79
330_Y	350_H	0.593	0.79
407_V	419_D	0.592	0.79
138_G	141_K	0.591	0.79
405_G	408_N	0.591	0.79
407_V	423_V	0.588	0.78
145_Y	155_V	0.587	0.78
377_N	381_Y	0.587	0.78
397_T	400_S	0.587	0.78
449_E	495_T	0.585	0.78
430_A	435_S	0.583	0.78
157_T	168_P	0.582	0.78
334_T	348_S	0.582	0.78
382_N	388_T	0.580	0.77
394_R	400_S	0.579	0.77
145_Y	192_V	0.578	0.77
443_T	451_R	0.578	0.77
237_V	240_S	0.578	0.77
420_W	435_S	0.578	0.77
368_N	374_Q	0.577	0.77
65_S	127_W	0.577	0.77
469_G	473_T	0.577	0.77
445_G	448_I	0.576	0.77
367_A	372_V	0.575	0.77
191_A	254_G	0.575	0.77
387_E	392_N	0.574	0.77
410_Q	438_A	0.573	0.77
192_V	202_L	0.573	0.77
147_A	186_W	0.573	0.77
65_S	281_G	0.572	0.76
146_F	154_G	0.572	0.76
88_V	105_I	0.571	0.76
367_A	373_T	0.567	0.76
384_V	390_A	0.567	0.76
92_S	101_D	0.567	0.76
61_Y	142_F	0.567	0.76
193_F	291_P	0.566	0.76
43_I	62_I	0.565	0.76
391_W	401_T	0.565	0.76
444_L	447_K	0.564	0.75
365_V	369_Y	0.563	0.75
424_G	427_D	0.561	0.75
404_G	421_I	0.561	0.75
264_Y	286_M	0.560	0.75
193_F	199_T	0.560	0.75
301_F	305_P	0.560	0.75
269_N	315_N	0.559	0.75
371_G	374_Q	0.558	0.75
462_T	480_A	0.558	0.75
428_F	434_R	0.557	0.75
392_N	397_T	0.556	0.74
398_E	402_A	0.556	0.74
404_G	422_A	0.556	0.74
443_T	448_I	0.555	0.74
398_E	403_P	0.555	0.74
438_A	441_A	0.555	0.74
63_Y	88_V	0.555	0.74
389_F	395_I	0.555	0.74
42_L	62_I	0.553	0.74
407_V	411_H	0.553	0.74
375_I	380_P	0.550	0.74
393_G	400_S	0.550	0.74
442_S	447_K	0.549	0.73
100_T	162_I	0.549	0.73
159_D	162_I	0.547	0.73
409_N	421_I	0.547	0.73
331_H	348_S	0.545	0.73
99_W	262_Y	0.545	0.73
304_N	314_N	0.545	0.73
160_S	163_G	0.544	0.73
469_G	474_W	0.542	0.73
420_W	425_N	0.541	0.72
226_R	243_T	0.541	0.72
387_E	395_I	0.540	0.72
380_P	390_A	0.540	0.72
119_I	123_A	0.539	0.72
226_R	241_A	0.539	0.72
430_A	433_A	0.539	0.72
205_G	226_R	0.538	0.72
479_T	482_S	0.537	0.72
427_D	487_V	0.535	0.72
409_N	413_T	0.535	0.72
456_D	461_G	0.534	0.71
420_W	423_V	0.533	0.71
147_A	155_V	0.533	0.71
396_L	401_T	0.532	0.71
50_D	65_S	0.531	0.71
120_A	124_G	0.530	0.71
86_N	346_Y	0.529	0.71
90_V	105_I	0.528	0.71
126_S	147_A	0.526	0.70
450_V	454_S	0.523	0.70
66_S	86_N	0.523	0.70
389_F	396_L	0.521	0.70
137_N	232_P	0.520	0.69
378_L	384_V	0.519	0.69
265_S	318_A	0.519	0.69
449_E	468_T	0.519	0.69
382_N	392_N	0.517	0.69
202_L	237_V	0.517	0.69
407_V	412_V	0.516	0.69
367_A	371_G	0.516	0.69
488_H	491_F	0.515	0.69
384_V	388_T	0.514	0.69
354_L	364_E	0.513	0.68
432_G	436_F	0.513	0.68
225_A	268_I	0.513	0.68
447_K	466_P	0.513	0.68
502_L	506_D	0.513	0.68
444_L	450_V	0.512	0.68
57_N	94_A	0.512	0.68
356_H	361_S	0.512	0.68
279_P	333_Q	0.511	0.68
411_H	416_Q	0.511	0.68
62_I	349_P	0.510	0.68
404_G	411_H	0.510	0.68
387_E	396_L	0.508	0.68
394_R	403_P	0.507	0.68
68_D	86_N	0.507	0.68
200_G	230_L	0.506	0.67
456_D	460_V	0.504	0.67
253_S	269_N	0.503	0.67
49_A	349_P	0.502	0.67
256_H	356_H	0.502	0.67
331_H	334_T	0.500	0.66
399_K	403_P	0.500	0.66

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3c7fA	1	0.9493	100	0.289	Contact Map
3c2uA	3	0.8285	100	0.4	Contact Map
1yrzA	1	0.8226	100	0.402	Contact Map
2exhA	3	0.8265	100	0.411	Contact Map
1yifA	3	0.8265	100	0.412	Contact Map
3zxkA	1	0.7895	100	0.432	Contact Map
2x8sA	1	0.7427	100	0.449	Contact Map
4kc7A	1	0.7427	100	0.49	Contact Map
4kcaA	2	0.8538	100	0.491	Contact Map
4novA	1	0.5595	100	0.498	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0124 seconds.