GREMLIN Database
SRFAC - Surfactin synthase subunit 3
UniProt: Q08787 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 1275 (1028)
Sequences: 17113 (14205)
Seq/√Len: 443.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
609_P626_I4.9281.00
883_Y921_H4.4371.00
806_L846_A4.0211.00
516_V542_L3.8381.00
69_V83_L3.6051.00
514_G608_D3.5531.00
514_G815_K3.3341.00
628_T815_K3.3101.00
274_D305_R3.2301.00
312_I320_R3.1721.00
544_V553_I3.1421.00
1022_P1025_L2.8651.00
496_D536_K2.8561.00
559_D614_Y2.8321.00
748_K766_V2.8211.00
42_K138_S2.8201.00
505_R509_H2.7471.00
649_T674_R2.7281.00
496_D599_D2.7161.00
847_R855_E2.6611.00
500_N536_K2.6241.00
464_K472_E2.6231.00
219_R410_D2.5721.00
803_V857_A2.5721.00
791_L807_C2.5341.00
473_A477_N2.5251.00
763_T788_V2.5181.00
790_I846_A2.5171.00
977_I1013_I2.5051.00
314_F428_L2.5021.00
691_D695_Q2.4641.00
511_A539_A2.4581.00
973_M1040_K2.4531.00
995_D998_A2.3991.00
983_E1012_R2.3651.00
205_Y324_Q2.3631.00
980_I1009_A2.3631.00
993_H1033_A2.3491.00
471_K496_D2.3411.00
265_L424_A2.3311.00
493_R497_E2.3191.00
411_E415_L2.3121.00
967_I993_H2.2991.00
515_S563_A2.2921.00
269_Y420_Q2.2831.00
59_I165_V2.2631.00
820_R823_L2.2631.00
473_A476_A2.2611.00
628_T631_N2.2591.00
502_I529_I2.2551.00
631_N759_T2.2431.00
706_A730_E2.2411.00
995_D1030_P2.2341.00
970_R992_I2.2311.00
286_A290_G2.2211.00
198_S331_H2.2061.00
788_V808_I2.2041.00
402_L414_I2.1971.00
250_Q315_N2.1881.00
907_L935_F2.1771.00
809_S839_L2.1751.00
518_A562_A2.1701.00
511_A515_S2.1661.00
1014_K1020_D2.1661.00
247_A257_A2.1531.00
648_D699_N2.1401.00
233_F400_I2.1381.00
972_E975_E2.1321.00
477_N480_A2.1281.00
971_N1040_K2.1101.00
44_K138_S2.0921.00
1031_T1034_G2.0721.00
895_R901_A2.0631.00
908_V941_L2.0611.00
966_W989_Q2.0571.00
481_P489_T2.0561.00
905_A935_F2.0561.00
513_K608_D2.0531.00
516_V612_I2.0451.00
787_S809_S2.0451.00
484_T674_R2.0431.00
803_V845_L2.0381.00
57_N61_D2.0331.00
866_I893_A2.0221.00
263_S306_V2.0181.00
555_Y621_K2.0131.00
787_S831_N2.0031.00
609_P815_K1.9961.00
392_A400_I1.9891.00
790_I854_I1.9851.00
882_E925_Q1.9851.00
420_Q446_E1.9821.00
527_L656_Y1.9781.00
402_L418_K1.9761.00
229_K411_E1.9691.00
244_T394_P1.9591.00
504_R600_P1.9531.00
849_L855_E1.9491.00
976_T1016_E1.9491.00
612_I818_V1.9461.00
679_D682_T1.9401.00
315_N433_D1.9351.00
94_D133_K1.9261.00
640_D784_S1.9201.00
515_S539_A1.9131.00
992_I1032_I1.9121.00
229_K406_E1.9051.00
702_F761_F1.8781.00
509_H583_T1.8781.00
499_A536_K1.8771.00
634_G785_N1.8731.00
62_R161_D1.8711.00
906_Y955_P1.8691.00
231_L415_L1.8671.00
276_A303_P1.8671.00
199_L342_Q1.8651.00
502_I533_G1.8641.00
978_A1032_I1.8631.00
106_K109_E1.8611.00
500_N504_R1.8561.00
53_E57_N1.8461.00
881_Q888_D1.8331.00
145_Y150_L1.8271.00
831_N837_E1.8221.00
991_G994_D1.8171.00
1025_L1038_Y1.8151.00
15_L78_P1.8091.00
607_N630_A1.8051.00
160_Q293_H1.7881.00
516_V540_A1.7831.00
648_D723_R1.7771.00
262_W390_L1.7751.00
996_F1001_G1.7751.00
485_Y525_L1.7701.00
765_H853_T1.7691.00
877_E891_V1.7661.00
58_V169_L1.7541.00
849_L853_T1.7461.00
431_N434_Q1.7461.00
971_N992_I1.7451.00
907_L937_F1.7391.00
59_I162_L1.7391.00
484_T696_E1.7371.00
243_F254_L1.7371.00
864_V873_L1.7351.00
27_I72_H1.7331.00
530_G566_L1.7281.00
605_D608_D1.7281.00
69_V124_D1.7211.00
554_S558_A1.7101.00
981_W1032_I1.7061.00
660_A702_F1.7041.00
607_N628_T1.7021.00
203_R342_Q1.7021.00
893_A901_A1.6931.00
479_D493_R1.6891.00
1029_A1038_Y1.6851.00
890_V941_L1.6821.00
498_E526_E1.6811.00
199_L334_V1.6781.00
980_I1013_I1.6761.00
979_Q1016_E1.6741.00
555_Y614_Y1.6681.00
971_N975_E1.6671.00
512_G515_S1.6661.00
682_T688_R1.6601.00
158_V295_V1.6571.00
465_P468_Y1.6561.00
904_N936_T1.6551.00
440_N447_R1.6511.00
862_D951_K1.6501.00
685_D688_R1.6491.00
313_T316_G1.6491.00
435_P438_T1.6471.00
274_D307_K1.6471.00
200_R204_E1.6471.00
209_F276_A1.6451.00
676_I698_V1.6451.00
496_D500_N1.6441.00
678_A692_L1.6441.00
648_D673_A1.6421.00
788_V806_L1.6411.00
649_T698_V1.6411.00
879_Q922_L1.6401.00
765_H778_P1.6401.00
261_V425_I1.6301.00
792_N796_Q1.6291.00
471_K536_K1.6181.00
490_L525_L1.6161.00
126_P149_I1.6151.00
239_E426_Q1.6141.00
218_Q413_F1.6101.00
631_N813_V1.6101.00
427_Q440_N1.6061.00
654_S660_A1.6051.00
967_I992_I1.5991.00
52_L162_L1.5961.00
557_L562_A1.5961.00
519_L530_G1.5911.00
976_T979_Q1.5881.00
93_I130_A1.5871.00
519_L531_I1.5871.00
692_L696_E1.5821.00
56_M129_A1.5821.00
890_V949_V1.5791.00
96_T136_E1.5731.00
472_E476_A1.5661.00
481_P674_R1.5641.00
267_S308_L1.5571.00
256_T322_Q1.5541.00
1009_A1026_L1.5521.00
490_L529_I1.5481.00
752_C761_F1.5481.00
58_V61_D1.5451.00
260_A317_L1.5421.00
984_V1009_A1.5411.00
869_H929_Y1.5391.00
550_E554_S1.5381.00
726_L752_C1.5361.00
466_L632_I1.5341.00
20_E77_R1.5281.00
390_L402_L1.5271.00
895_R898_S1.5181.00
68_T80_Q1.5171.00
548_L556_M1.5131.00
422_L426_Q1.5041.00
938_L941_L1.5041.00
46_S137_E1.5031.00
212_Q351_H1.4991.00
663_F761_F1.4981.00
974_E992_I1.4981.00
805_E841_R1.4921.00
702_F752_C1.4891.00
201_Y328_S1.4881.00
975_E979_Q1.4831.00
225_G407_N1.4831.00
1024_K1028_E1.4831.00
663_F702_F1.4811.00
881_Q889_A1.4751.00
879_Q925_Q1.4691.00
12_M79_V1.4671.00
906_Y957_P1.4641.00
415_L419_S1.4601.00
635_L761_F1.4591.00
1002_H1005_K1.4591.00
664_D702_F1.4571.00
973_M976_T1.4551.00
303_P339_I1.4531.00
464_K468_Y1.4501.00
245_E249_S1.4481.00
44_K376_V1.4481.00
110_Y132_F1.4461.00
120_D123_R1.4451.00
496_D499_A1.4441.00
676_I692_L1.4421.00
481_P484_T1.4411.00
977_I1032_I1.4361.00
533_G537_A1.4311.00
198_S333_Y1.4251.00
234_S397_E1.4241.00
788_V846_A1.4231.00
96_T133_K1.4231.00
448_E452_T1.4231.00
702_F728_G1.4211.00
470_F532_L1.4181.00
653_V704_T1.4171.00
196_Q200_R1.4141.00
528_V665_F1.4061.00
887_K910_R1.4031.00
651_L678_A1.3981.00
454_L848_W1.3981.00
834_K837_E1.3951.00
68_T82_V1.3941.00
970_R974_E1.3941.00
635_L663_F1.3901.00
348_L351_H1.3891.00
914_S917_D1.3881.00
109_E113_Q1.3831.00
261_V428_L1.3831.00
880_L905_A1.3811.00
649_T676_I1.3801.00
485_Y488_Q1.3741.00
829_I839_L1.3731.00
306_V321_L1.3721.00
762_A808_I1.3681.00
107_I140_E1.3671.00
891_V905_A1.3661.00
568_H571_M1.3651.00
469_W633_Q1.3641.00
63_Y161_D1.3641.00
548_L657_A1.3611.00
977_I1036_S1.3521.00
625_N814_S1.3521.00
309_S312_I1.3501.00
263_S277_F1.3481.00
486_S679_D1.3481.00
1004_L1007_M1.3481.00
51_C169_L1.3461.00
795_S807_C1.3451.00
467_T629_H1.3441.00
970_R1033_A1.3361.00
269_Y417_L1.3321.00
199_L203_R1.3291.00
246_L429_I1.3291.00
895_R899_G1.3281.00
542_L560_S1.3281.00
307_K312_I1.3271.00
569_Q588_D1.3251.00
334_V342_Q1.3211.00
484_T489_T1.3191.00
434_Q438_T1.3191.00
559_D820_R1.3171.00
604_I608_D1.3171.00
540_A609_P1.3141.00
471_K499_A1.3131.00
1006_A1010_A1.3121.00
98_L103_Q1.3101.00
254_L398_M1.3101.00
469_W637_K1.3081.00
978_A992_I1.3071.00
700_V724_C1.3021.00
488_Q498_E1.2991.00
627_T814_S1.2961.00
1025_L1028_E1.2961.00
470_F474_V1.2951.00
53_E92_E1.2951.00
909_N937_F1.2951.00
114_D117_R1.2941.00
559_D621_K1.2931.00
104_T108_N1.2881.00
635_L760_V1.2881.00
49_I131_I1.2851.00
467_T604_I1.2831.00
236_S426_Q1.2821.00
58_V165_V1.2801.00
789_Y833_F1.2741.00
558_A621_K1.2731.00
52_L141_W1.2731.00
225_G405_N1.2731.00
165_V177_L1.2701.00
586_F589_D1.2691.00
511_A517_V1.2671.00
635_L728_G1.2661.00
831_N839_L1.2651.00
44_K374_D1.2651.00
71_I81_V1.2631.00
713_D739_K1.2631.00
550_E574_Q1.2631.00
61_D85_K1.2621.00
54_E169_L1.2621.00
260_A321_L1.2611.00
64_D182_P1.2591.00
311_G437_S1.2571.00
47_L139_F1.2561.00
250_Q319_K1.2551.00
879_Q882_E1.2541.00
323_E327_Q1.2521.00
454_L800_F1.2501.00
114_D144_S1.2501.00
789_Y831_N1.2441.00
42_K376_V1.2431.00
728_G761_F1.2431.00
20_E191_E1.2421.00
449_F453_G1.2421.00
242_A426_Q1.2421.00
652_S677_I1.2421.00
504_R596_Q1.2351.00
264_V424_A1.2341.00
448_E453_G1.2301.00
428_L439_I1.2261.00
973_M1039_L1.2251.00
626_I818_V1.2241.00
660_A761_F1.2221.00
308_L312_I1.2211.00
697_N721_G1.2191.00
70_F149_I1.2171.00
231_L418_K1.2111.00
654_S702_F1.2091.00
526_E568_H1.2081.00
873_L891_V1.2031.00
702_F705_T1.2031.00
1012_R1016_E1.2031.00
236_S239_E1.2021.00
845_L860_I1.2021.00
474_V496_D1.2011.00
419_S443_D1.2001.00
1029_A1034_G1.2001.00
660_A728_G1.2001.00
233_F418_K1.1981.00
48_N51_C1.1981.00
265_L421_L1.1931.00
919_K935_F1.1931.00
758_G808_I1.1901.00
567_T571_M1.1891.00
560_S614_Y1.1851.00
447_R451_L1.1841.00
410_D413_F1.1821.00
1008_T1012_R1.1811.00
508_K595_E1.1801.00
907_L918_V1.1801.00
821_A825_K1.1801.00
204_E207_E1.1791.00
264_V317_L1.1781.00
205_Y327_Q1.1781.00
483_L525_L1.1781.00
635_L702_F1.1771.00
1006_A1026_L1.1741.00
242_A430_Q1.1741.00
461_H785_N1.1731.00
750_I766_V1.1731.00
636_V670_L1.1721.00
1010_A1026_L1.1721.00
53_E89_H1.1721.00
1013_I1019_I1.1711.00
787_S837_E1.1711.00
823_L827_K1.1701.00
262_W358_Y1.1701.00
997_F1027_F1.1691.00
70_F148_I1.1691.00
668_S673_A1.1671.00
978_A990_I1.1671.00
227_E407_N1.1671.00
921_H925_Q1.1651.00
814_S828_F1.1651.00
258_L398_M1.1651.00
919_K923_K1.1641.00
339_I343_A1.1621.00
648_D700_V1.1611.00
231_L411_E1.1611.00
758_G762_A1.1591.00
201_Y205_Y1.1591.00
662_T760_V1.1581.00
732_A751_N1.1571.00
1002_H1023_V1.1571.00
1002_H1006_A1.1551.00
982_S989_Q1.1541.00
967_I1033_A1.1531.00
800_F848_W1.1531.00
724_C750_I1.1501.00
438_T796_Q1.1501.00
734_V738_R1.1481.00
535_L610_A1.1461.00
17_P190_L1.1461.00
596_Q600_P1.1461.00
663_F752_C1.1431.00
409_F414_I1.1421.00
521_T530_G1.1411.00
569_Q586_F1.1411.00
651_L693_I1.1401.00
467_T535_L1.1401.00
783_I786_A1.1381.00
680_E683_L1.1361.00
234_S399_L1.1361.00
491_S494_E1.1341.00
530_G534_V1.1341.00
278_G355_F1.1331.00
389_N403_A1.1301.00
966_W991_G1.1291.00
165_V169_L1.1281.00
708_F727_F1.1281.00
645_S648_D1.1281.00
42_K140_E1.1251.00
404_Y414_I1.1231.00
514_G609_P1.1231.00
660_A663_F1.1221.00
781_K853_T1.1191.00
740_A749_L1.1161.00
459_Q785_N1.1161.00
481_P491_S1.1141.00
483_L528_V1.1141.00
709_N733_S1.1111.00
733_S736_H1.1111.00
981_W1001_G1.1111.00
242_A429_I1.1101.00
635_L759_T1.1081.00
569_Q589_D1.1081.00
551_D555_Y1.1051.00
57_N87_Q1.1041.00
230_E403_A1.1041.00
48_N166_Y1.1011.00
240_T398_M1.0981.00
114_D130_A1.0961.00
49_I92_E1.0951.00
866_I901_A1.0941.00
26_A31_G1.0891.00
659_D755_P1.0881.00
338_D341_S1.0881.00
644_F673_A1.0881.00
894_D956_K1.0861.00
40_T140_E1.0851.00
470_F496_D1.0841.00
790_I806_L1.0831.00
992_I1033_A1.0831.00
635_L664_D1.0831.00
22_M297_L1.0811.00
688_R691_D1.0771.00
807_C841_R1.0761.00
424_A439_I1.0761.00
701_M722_L1.0761.00
589_D592_R1.0751.00
92_E133_K1.0721.00
651_L692_L1.0721.00
416_R420_Q1.0701.00
653_V703_A1.0691.00
252_T256_T1.0681.00
522_K568_H1.0661.00
564_C583_T1.0641.00
1007_M1023_V1.0631.00
312_I316_G1.0631.00
789_Y809_S1.0621.00
583_T586_F1.0601.00
709_N736_H1.0571.00
471_K599_D1.0561.00
627_T759_T1.0551.00
51_C166_Y1.0541.00
67_R82_V1.0511.00
186_Y189_W1.0511.00
273_G793_E1.0501.00
201_Y327_Q1.0491.00
468_Y471_K1.0461.00
53_E90_I1.0461.00
1002_H1007_M1.0451.00
69_V81_V1.0431.00
252_T318_L1.0421.00
555_Y559_D1.0421.00
1010_A1014_K1.0411.00
790_I798_Q1.0411.00
488_Q525_L1.0401.00
1006_A1023_V1.0381.00
258_L392_A1.0351.00
40_T142_V1.0351.00
862_D877_E1.0341.00
639_V663_F1.0341.00
874_E877_E1.0331.00
883_Y918_V1.0331.00
131_I141_W1.0321.00
531_I665_F1.0311.00
229_K404_Y1.0311.00
518_A544_V1.0311.00
652_S675_L1.0281.00
196_Q199_L1.0261.00
630_A811_M1.0261.00
541_Y662_T1.0261.00
423_T443_D1.0261.00
1019_I1039_L1.0251.00
316_G319_K1.0231.00
121_L148_I1.0231.00
499_A533_G1.0211.00
37_E150_L1.0211.00
505_R508_K1.0201.00
737_V749_L1.0171.00
597_A600_P1.0161.00
663_F728_G1.0151.00
758_G813_V1.0151.00
246_L250_Q1.0141.00
390_L400_I1.0131.00
267_S270_Q1.0121.00
636_V667_A1.0121.00
440_N796_Q1.0121.00
1009_A1035_I1.0111.00
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650_F752_C0.5000.97
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4dg8A 1 0.3867 100 0.565 Contact Map
4iz6A 2 0.4604 100 0.592 Contact Map
4r0mB 1 0.4518 100 0.604 Contact Map
1amuA 1 0.3984 100 0.626 Contact Map
4d4iA 1 0.3663 100 0.639 Contact Map
3tsyA 2 0.5153 100 0.653 Contact Map
4gr5A 1 0.36 100 0.658 Contact Map
3g7sA 2 0.3639 100 0.66 Contact Map
3vnrA 1 0.3796 100 0.666 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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