COTZ - BACSU - GREMLIN Contacts

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COTZ - Spore coat protein Z

UniProt:	Q08312	Sequences: MSQKTSSCVREAVENIEDLQNAVEEDCPTGCHSKLLSVSHSLGDTVPFAIFTSKSTPLVAFGNVGELDNGPCFNTVFFRVERVHGSCATLSLLIAFDEHKHILDFTDKDTVCEVFRLEKTNYCIEVDLDCFCAINCLNPRLINRTHHH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	148 (138)
Sequences:	136 (100)
Seq/√Len:	8.5

BACSU - COTZ COTY

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
10_R	86_S	9.153	1.00
48_F	134_I	3.723	0.97
52_T	55_S	3.367	0.94
47_P	137_L	2.976	0.89
81_E	91_S	2.749	0.84
13_V	134_I	2.711	0.84
46_V	139_P	2.554	0.80
27_C	31_C	2.318	0.72
91_S	121_N	2.259	0.70
17_E	21_N	2.251	0.70
83_V	88_A	2.241	0.70
13_V	48_F	2.127	0.65
80_V	88_A	2.123	0.65
84_H	88_A	1.799	0.52
13_V	55_S	1.789	0.52
80_V	83_V	1.757	0.50
60_A	78_F	1.752	0.50
47_P	62_G	1.740	0.49
47_P	117_L	1.699	0.48
62_G	92_L	1.669	0.46
36_L	82_R	1.620	0.44
21_N	25_E	1.618	0.44
57_P	61_F	1.605	0.44
117_L	137_L	1.604	0.44
92_L	139_P	1.602	0.44
46_V	92_L	1.588	0.43
46_V	91_S	1.513	0.40
59_V	76_V	1.511	0.40
78_F	90_L	1.491	0.39
91_S	139_P	1.475	0.38
54_K	57_P	1.446	0.37
81_E	121_N	1.426	0.36
9_V	133_A	1.424	0.36
75_T	92_L	1.395	0.35
34_K	139_P	1.384	0.35
44_D	80_V	1.355	0.34
91_S	122_Y	1.352	0.34
19_L	91_S	1.348	0.33
74_N	134_I	1.330	0.33
46_V	62_G	1.326	0.33
31_C	136_C	1.310	0.32
23_V	30_G	1.297	0.32
15_N	19_L	1.276	0.31
49_A	57_P	1.260	0.30
95_A	138_N	1.259	0.30
13_V	52_T	1.247	0.30
30_G	92_L	1.202	0.28
12_A	91_S	1.193	0.28
62_G	139_P	1.157	0.27
58_L	123_C	1.153	0.27
49_A	137_L	1.146	0.26
90_L	126_V	1.142	0.26
117_L	126_V	1.091	0.25
25_E	40_H	1.074	0.24
16_I	20_Q	1.041	0.23
36_L	117_L	1.026	0.23
51_F	124_I	1.024	0.23
49_A	59_V	1.024	0.23
15_N	75_T	1.024	0.23
46_V	81_E	1.023	0.23
78_F	126_V	1.018	0.22
71_P	129_D	1.000	0.22
14_E	18_D	0.999	0.22
5_T	56_T	0.997	0.22
48_F	72_C	0.990	0.22
16_I	124_I	0.974	0.21
55_S	91_S	0.970	0.21
36_L	81_E	0.960	0.21
47_P	92_L	0.950	0.20
11_E	71_P	0.949	0.20
88_A	131_F	0.946	0.20
31_C	87_C	0.945	0.20
23_V	46_V	0.944	0.20
7_S	94_I	0.940	0.20
51_F	120_T	0.914	0.19
47_P	84_H	0.910	0.19
8_C	16_I	0.910	0.19
35_L	78_F	0.886	0.19
16_I	58_L	0.883	0.19
10_R	13_V	0.871	0.18
40_H	43_G	0.867	0.18
55_S	81_E	0.867	0.18
12_A	125_E	0.859	0.18
79_R	119_K	0.859	0.18
121_N	135_N	0.853	0.18
48_F	55_S	0.850	0.18
12_A	133_A	0.841	0.18
52_T	122_Y	0.839	0.18
26_D	82_R	0.837	0.17
30_G	70_G	0.833	0.17
75_T	81_E	0.827	0.17
96_F	100_K	0.815	0.17
19_L	60_A	0.815	0.17
22_A	134_I	0.814	0.17
75_T	113_E	0.810	0.17
97_D	100_K	0.809	0.17
37_S	124_I	0.800	0.17
77_F	107_D	0.800	0.17
7_S	14_E	0.797	0.17
91_S	135_N	0.792	0.16
47_P	93_L	0.792	0.16
77_F	134_I	0.791	0.16
13_V	86_S	0.782	0.16
72_C	114_V	0.762	0.16
9_V	135_N	0.754	0.16
17_E	38_V	0.753	0.16
110_T	114_V	0.744	0.15
125_E	141_L	0.743	0.15
53_S	71_P	0.735	0.15
77_F	141_L	0.731	0.15
18_D	41_S	0.729	0.15
62_G	137_L	0.722	0.15
44_D	107_D	0.719	0.15
9_V	117_L	0.717	0.15
105_F	108_K	0.714	0.15
20_Q	45_T	0.714	0.15
60_A	92_L	0.711	0.15
76_V	95_A	0.711	0.15
92_L	137_L	0.704	0.14
42_L	49_A	0.694	0.14
102_I	114_V	0.692	0.14
8_C	136_C	0.691	0.14
34_K	89_T	0.690	0.14
11_E	53_S	0.689	0.14
12_A	89_T	0.689	0.14
34_K	56_T	0.677	0.14
73_F	99_H	0.677	0.14
11_E	21_N	0.675	0.14
87_C	136_C	0.675	0.14
19_L	92_L	0.672	0.14
87_C	132_C	0.667	0.14
77_F	94_I	0.666	0.14
62_G	91_S	0.665	0.14
17_E	83_V	0.657	0.14
51_F	137_L	0.656	0.13
52_T	106_T	0.652	0.13
52_T	91_S	0.651	0.13
55_S	135_N	0.650	0.13
11_E	119_K	0.650	0.13
95_A	114_V	0.649	0.13
44_D	89_T	0.649	0.13
56_T	61_F	0.643	0.13
26_D	36_L	0.639	0.13
10_R	80_V	0.639	0.13
12_A	103_L	0.633	0.13
9_V	49_A	0.632	0.13
19_L	139_P	0.632	0.13
95_A	135_N	0.631	0.13
91_S	138_N	0.629	0.13
44_D	77_F	0.629	0.13
51_F	59_V	0.628	0.13
57_P	142_I	0.622	0.13
18_D	116_R	0.619	0.13
19_L	121_N	0.618	0.13
94_I	104_D	0.618	0.13
4_K	119_K	0.617	0.13
87_C	127_D	0.617	0.13
44_D	76_V	0.616	0.13
34_K	44_D	0.615	0.13
28_P	120_T	0.607	0.13
4_K	101_H	0.604	0.12
84_H	137_L	0.596	0.12
19_L	138_N	0.596	0.12
26_D	113_E	0.593	0.12
12_A	140_R	0.592	0.12
23_V	92_L	0.590	0.12
8_C	87_C	0.590	0.12
36_L	137_L	0.581	0.12
4_K	99_H	0.579	0.12
73_F	77_F	0.577	0.12
12_A	109_D	0.574	0.12
101_H	104_D	0.569	0.12
27_C	30_G	0.569	0.12
5_T	90_L	0.562	0.12
50_I	131_F	0.558	0.12
38_V	42_L	0.557	0.12
44_D	88_A	0.557	0.12
13_V	16_I	0.556	0.12
14_E	98_E	0.555	0.12
87_C	130_C	0.551	0.12
19_L	47_P	0.551	0.12
62_G	121_N	0.549	0.12
25_E	129_D	0.548	0.11
15_N	44_D	0.545	0.11
18_D	80_V	0.539	0.11
82_R	137_L	0.539	0.11
23_V	72_C	0.538	0.11
117_L	141_L	0.536	0.11
22_A	63_N	0.532	0.11
8_C	123_C	0.531	0.11
7_S	89_T	0.530	0.11
14_E	106_T	0.529	0.11
45_T	58_L	0.527	0.11
54_K	89_T	0.525	0.11
30_G	135_N	0.524	0.11
81_E	135_N	0.522	0.11
56_T	96_F	0.517	0.11
45_T	79_R	0.516	0.11
84_H	142_I	0.516	0.11
49_A	117_L	0.515	0.11
58_L	131_F	0.513	0.11
53_S	58_L	0.513	0.11
8_C	20_Q	0.509	0.11
53_S	74_N	0.509	0.11
32_H	36_L	0.502	0.11
18_D	85_G	0.501	0.11
38_V	72_C	0.500	0.11

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3d23B	4	0.3378	4	0.963	Contact Map
1fu9A	1	0.2365	3.2	0.965	Contact Map
1rjuV	1	0.2432	3	0.965	Contact Map
3c5xC	1	0.473	2.4	0.967	Contact Map
1psyA	1	0.3716	2.3	0.967	Contact Map
2l9zA	1	0.2635	2.1	0.968	Contact Map
4b03D	5	0.5608	2	0.968	Contact Map
3ob4A	2	0.3446	1.8	0.969	Contact Map
2lzoA	1	0.1216	1.6	0.97	Contact Map
2v2fA	1	0.1014	1.6	0.97	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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