GREMLIN Database
RL11 - 50S ribosomal protein L11
UniProt: Q06796 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 141 (139)
Sequences: 2146 (867)
Seq/√Len: 73.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
37_G41_E3.6731.00
79_L137_I3.5101.00
79_L100_V3.0281.00
99_T138_V2.8851.00
106_R110_E2.8491.00
44_A47_A2.7941.00
17_K50_A2.7251.00
7_K31_A2.5511.00
91_E95_N2.4971.00
26_P30_Q2.3921.00
102_R129_E2.3691.00
75_A128_V2.3491.00
106_R125_M2.3131.00
4_K62_E2.2881.00
99_T140_E2.2701.00
91_E94_R2.2621.00
54_I70_T2.2001.00
101_K104_K2.1631.00
33_V60_V2.0901.00
9_V60_V2.0821.00
82_A107_E1.7741.00
13_I24_V1.6821.00
93_N96_K1.6741.00
103_D106_R1.6701.00
41_E45_R1.6441.00
52_L77_V1.6291.00
83_A100_V1.6080.99
96_K138_V1.5720.99
105_V125_M1.5490.99
105_V129_E1.4980.99
5_V59_S1.4180.99
36_M40_K1.3840.98
19_N39_C1.3790.98
102_R125_M1.3450.98
103_D107_E1.3120.98
104_K107_E1.3020.98
107_E110_E1.2990.98
14_P17_K1.2910.97
8_V57_E1.2840.97
23_P26_P1.2790.97
121_V125_M1.2430.97
105_V128_V1.2340.97
47_A50_A1.2270.97
118_A124_A1.2200.96
72_T114_P1.2060.96
87_S90_G1.1980.96
77_V80_K1.1520.95
126_R129_E1.1510.95
113_M118_A1.1400.95
89_S93_N1.1380.95
120_D123_A1.1300.94
57_E71_K1.1270.94
9_V31_A1.1140.94
80_K85_I1.1030.94
79_L83_A1.0950.93
113_M124_A1.0930.93
118_A123_A1.0880.93
90_G95_N1.0860.93
42_F57_E1.0650.93
102_R105_V1.0580.92
125_M129_E1.0530.92
52_L81_K1.0490.92
14_P53_I1.0330.91
119_A123_A1.0320.91
83_A137_I1.0250.91
89_S95_N1.0150.91
34_N37_G1.0150.91
78_L111_T0.9990.90
49_Q53_I0.9980.90
30_Q35_I0.9850.89
116_L124_A0.9640.88
80_K87_S0.9580.88
13_I53_I0.9570.88
72_T75_A0.9270.86
76_A131_T0.9250.86
109_A121_V0.9220.86
79_L132_A0.9140.85
5_V8_V0.9080.85
106_R121_V0.9050.85
100_V137_I0.9040.85
53_I77_V0.9020.85
82_A111_T0.8950.84
33_V65_S0.8940.84
85_I137_I0.8830.83
107_E111_T0.8710.82
61_Y67_T0.8680.82
117_N127_M0.8680.82
81_K84_G0.8490.81
56_V70_T0.8490.81
45_R68_F0.8430.80
110_E121_V0.8370.80
123_A126_R0.8330.80
37_G40_K0.8310.79
54_I73_P0.8310.79
11_L24_V0.8260.79
29_G134_S0.8220.79
83_A98_A0.8150.78
87_S95_N0.8070.77
6_V62_E0.8060.77
98_A137_I0.8050.77
30_Q33_V0.8050.77
72_T113_M0.8050.77
90_G93_N0.7990.77
49_Q52_L0.7730.74
31_A64_R0.7670.74
129_E133_R0.7600.73
89_S96_K0.7590.73
75_A100_V0.7570.73
83_A97_V0.7550.73
116_L127_M0.7530.72
36_M44_A0.7490.72
36_M66_F0.7460.72
76_A90_G0.7460.72
41_E68_F0.7430.71
13_I42_F0.7420.71
49_Q111_T0.7370.71
36_M39_C0.7340.70
37_G64_R0.7320.70
73_P78_L0.7270.70
102_R106_R0.7190.69
76_A93_N0.7160.69
57_E69_I0.7150.68
42_F62_E0.7060.67
85_I97_V0.7030.67
93_N97_V0.7020.67
100_V105_V0.7000.67
24_V68_F0.6990.67
9_V58_I0.6950.66
130_G134_S0.6950.66
20_P58_I0.6930.66
74_P135_M0.6900.66
6_V59_S0.6870.65
38_F42_F0.6820.65
82_A108_I0.6790.64
49_Q54_I0.6790.64
17_K51_G0.6790.64
17_K86_E0.6780.64
98_A138_V0.6770.64
9_V33_V0.6750.64
55_P72_T0.6720.64
11_L56_V0.6710.64
2_A8_V0.6680.63
42_F53_I0.6640.63
110_E125_M0.6600.62
31_A60_V0.6520.61
82_A104_K0.6500.61
19_N35_I0.6420.60
46_T54_I0.6420.60
15_A49_Q0.6400.60
26_P60_V0.6380.60
13_I35_I0.6380.60
13_I70_T0.6370.60
46_T70_T0.6360.59
2_A30_Q0.6260.58
106_R109_A0.6260.58
100_V139_I0.6180.57
123_A127_M0.6060.56
83_A139_I0.6060.56
80_K88_G0.5970.55
73_P111_T0.5910.54
122_E125_M0.5910.54
21_A27_A0.5890.54
55_P58_I0.5870.53
83_A105_V0.5870.53
18_A25_G0.5860.53
89_S92_P0.5860.53
41_E66_F0.5820.53
46_T61_Y0.5820.53
113_M117_N0.5810.53
40_K44_A0.5790.52
32_G64_R0.5750.52
36_M47_A0.5750.52
13_I31_A0.5670.51
100_V108_I0.5620.50
131_T135_M0.5600.50
27_A68_F0.5600.50
122_E126_R0.5590.50
24_V27_A0.5580.50
119_A128_V0.5580.50
45_R70_T0.5530.49
117_N124_A0.5510.49
27_A60_V0.5470.48
15_A70_T0.5450.48
22_P26_P0.5450.48
31_A131_T0.5440.48
110_E113_M0.5430.48
64_R70_T0.5380.47
61_Y65_S0.5370.47
67_T70_T0.5370.47
105_V119_A0.5360.47
26_P35_I0.5360.47
105_V139_I0.5310.46
38_F43_N0.5300.46
36_M41_E0.5260.46
20_P39_C0.5230.45
119_A127_M0.5210.45
21_A41_E0.5200.45
30_Q80_K0.5200.45
14_P50_A0.5190.45
120_D125_M0.5140.44
35_I58_I0.5120.44
103_D140_E0.5110.44
52_L78_L0.5080.44
79_L105_V0.5080.44
69_I114_P0.5060.43
30_Q34_N0.5020.43
101_K140_E0.5000.43
19_N23_P0.5000.43
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3bboK 1 0.9929 100 0.11 Contact Map
1mmsA 1 0.9433 100 0.119 Contact Map
4tp9I 1 0.0142 100 0.121 Contact Map
3j7yJ 1 0.9574 100 0.123 Contact Map
3egvB 1 0.5461 100 0.127 Contact Map
3j21H 1 0.9433 100 0.129 Contact Map
1vq8I 1 0.4965 100 0.14 Contact Map
3j61K 1 0.8865 100 0.173 Contact Map
4w22K 1 0.9291 100 0.188 Contact Map
3zf7M 1 0.9504 100 0.193 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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