DHSO - BACSU - GREMLIN Contacts

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DHSO - Sorbitol dehydrogenase

UniProt:	Q06004	Sequences: MTHTVPQNMKAAVMHNTREIKIETLPVPDINHDEVLIKVMAVGICGSDLHYYTNGRIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGRCEACKEGRYNLCPDVQFLATPPVDGAFVQYIKMRQDFVFLIPDSLSYEEAALIEPFSVGIHAAARTKLQPGSTIAIMGMGPVGLMAVAAAKAFGAGTIIVTDLEPLRLEAAKKMGATHIINIREQDALEEIKTITNDRGVDVAWETAGNPAALQSALASVRRGGKLAIVGLPSQNEIPLNVPFIADNEIDIYGIFRYANTYPKGIEFLASGIVDTKHLVTDQYSLEQTQDAMERALQFKNECLKVMVYPNR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	353 (305)
Sequences:	52862 (36583)
Seq/√Len:	2094.7

ECOLI - YBDR RSPB GATD YDJJ YDJL YPHC FRMA TDH ADHP YJJN YGGP AHR YAHK IDND YCJQ QOR1 ACUI CURA
BACSU - DHSO YJMD TDH BDHA ADHB YYCR ADHA YOGA YHFP YFMJ
HALSA - Q9HMB6 Q9HP38 GLCDH Q9HR85 Q9HQS8
SULSO - Q97ZV3 Q97YT7 ADH Q97XR4 Q7LXK1 Q97VV5 Q97YM2 Q97WA1 Q97TZ4 Q97V32 Q97VW0 GLCD2 GLCD1 GLCD3 Q97W06 Q97VB8 Q97UW5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
329_Q	332_D	2.943	1.00
40_M	149_Y	2.841	1.00
38_K	77_A	2.776	1.00
40_M	75_E	2.694	1.00
36_L	77_A	2.632	1.00
35_V	140_V	2.626	1.00
15_H	23_E	2.570	1.00
193_K	219_T	2.515	1.00
148_S	151_E	2.473	1.00
91_R	143_I	2.370	1.00
90_D	142_L	2.353	1.00
87_K	90_D	2.346	1.00
325_Y	336_R	2.306	1.00
72_C	128_A	2.286	1.00
232_E	235_T	2.282	1.00
38_K	75_E	2.224	1.00
150_E	324_Q	2.169	1.00
27_V	132_Y	2.153	1.00
211_E	215_K	2.149	1.00
38_K	132_Y	2.125	1.00
15_H	21_K	2.117	1.00
175_T	198_G	2.079	1.00
176_I	192_A	2.049	1.00
308_E	312_S	2.046	1.00
85_Q	137_Q	2.046	1.00
181_M	202_V	2.032	1.00
323_D	336_R	2.022	1.00
210_L	214_K	2.007	1.00
171_Q	174_S	1.994	1.00
33_D	82_S	1.987	1.00
189_V	218_A	1.980	1.00
13_V	23_E	1.965	1.00
324_Q	350_Y	1.964	1.00
32_H	81_S	1.961	1.00
166_A	195_F	1.957	1.00
31_N	34_E	1.951	1.00
326_S	329_Q	1.950	1.00
72_C	94_V	1.904	1.00
146_S	311_A	1.891	1.00
91_R	149_Y	1.883	1.00
73_A	149_Y	1.870	1.00
32_H	82_S	1.864	1.00
29_D	78_A	1.821	1.00
211_E	214_K	1.801	1.00
335_E	339_Q	1.798	1.00
174_S	267_K	1.790	1.00
158_F	187_M	1.789	1.00
177_A	242_V	1.743	1.00
36_L	134_K	1.735	1.00
177_A	203_T	1.725	1.00
166_A	305_K	1.724	1.00
77_A	132_Y	1.720	1.00
53_T	338_L	1.710	1.00
332_D	335_E	1.701	1.00
207_P	211_E	1.692	1.00
339_Q	342_N	1.686	1.00
325_Y	333_A	1.665	1.00
194_A	314_I	1.664	1.00
243_D	263_R	1.661	1.00
201_I	242_V	1.647	1.00
143_I	149_Y	1.636	1.00
204_D	210_L	1.621	1.00
80_G	83_V	1.606	1.00
210_L	221_I	1.594	1.00
332_D	336_R	1.592	1.00
267_K	292_D	1.581	1.00
262_V	268_L	1.578	1.00
179_M	258_A	1.558	1.00
207_P	223_N	1.549	1.00
86_F	142_L	1.523	1.00
12_A	330_T	1.519	1.00
220_H	236_I	1.518	1.00
227_Q	232_E	1.513	1.00
212_A	215_K	1.504	1.00
168_T	244_V	1.500	1.00
223_N	226_E	1.500	1.00
143_I	152_A	1.492	1.00
34_E	136_R	1.481	1.00
228_D	231_E	1.481	1.00
262_V	291_I	1.479	1.00
10_K	24_T	1.475	1.00
30_I	134_K	1.474	1.00
79_V	88_V	1.469	1.00
267_K	294_Y	1.465	1.00
129_F	334_M	1.460	1.00
207_P	226_E	1.454	1.00
150_E	350_Y	1.444	1.00
78_A	88_V	1.427	1.00
91_R	145_D	1.426	1.00
262_V	266_G	1.426	1.00
86_F	90_D	1.425	1.00
198_G	220_H	1.415	1.00
36_L	132_Y	1.413	1.00
10_K	131_Q	1.406	1.00
39_V	72_C	1.405	1.00
75_E	91_R	1.383	1.00
33_D	136_R	1.351	1.00
10_K	328_E	1.350	1.00
30_I	36_L	1.348	1.00
52_Y	334_M	1.346	1.00
34_E	134_K	1.339	1.00
245_A	258_A	1.338	1.00
189_V	202_V	1.310	1.00
76_I	86_F	1.310	1.00
331_Q	335_E	1.297	1.00
12_A	22_I	1.291	1.00
245_A	262_V	1.290	1.00
322_T	336_R	1.283	1.00
41_A	150_E	1.281	1.00
35_V	86_F	1.280	1.00
36_L	78_A	1.265	1.00
11_A	25_L	1.265	1.00
41_A	350_Y	1.261	1.00
231_E	235_T	1.258	1.00
198_G	219_T	1.236	1.00
175_T	201_I	1.234	1.00
336_R	342_N	1.230	1.00
205_L	210_L	1.218	1.00
75_E	149_Y	1.212	1.00
205_L	224_I	1.210	1.00
188_A	246_W	1.208	1.00
308_E	311_A	1.207	1.00
155_I	310_L	1.204	1.00
162_I	166_A	1.185	1.00
179_M	203_T	1.183	1.00
194_A	309_F	1.163	1.00
86_F	140_V	1.154	1.00
40_M	91_R	1.139	1.00
214_K	221_I	1.135	1.00
30_I	34_E	1.130	1.00
170_L	197_A	1.125	1.00
27_V	36_L	1.122	1.00
210_L	223_N	1.117	1.00
190_A	316_D	1.116	1.00
202_V	218_A	1.106	1.00
207_P	210_L	1.100	1.00
175_T	243_D	1.090	1.00
12_A	327_L	1.087	1.00
16_N	19_E	1.075	1.00
135_M	140_V	1.075	1.00
305_K	308_E	1.075	1.00
39_V	133_I	1.071	1.00
37_I	74_G	1.069	1.00
77_A	88_V	1.067	1.00
33_D	137_Q	1.056	1.00
232_E	236_I	1.052	1.00
330_T	349_V	1.042	1.00
168_T	269_A	1.038	1.00
174_S	243_D	1.033	1.00
44_I	333_A	1.025	1.00
151_E	316_D	1.025	1.00
9_M	27_V	1.016	1.00
52_Y	338_L	1.014	1.00
45_C	70_H	1.011	1.00
45_C	71_E	1.004	1.00
41_A	149_Y	0.999	1.00
212_A	344_C	0.997	1.00
22_I	328_E	0.996	1.00
161_G	191_A	0.996	1.00
260_A	285_F	0.991	1.00
326_S	350_Y	0.990	1.00
166_A	302_T	0.990	1.00
309_F	314_I	0.989	1.00
53_T	56_R	0.988	1.00
304_P	308_E	0.984	1.00
163_H	302_T	0.979	1.00
37_I	92_V	0.976	1.00
40_M	73_A	0.972	1.00
228_D	232_E	0.971	1.00
249_A	254_A	0.965	1.00
201_I	220_H	0.964	1.00
42_V	128_A	0.962	1.00
147_L	152_A	0.953	1.00
161_G	188_A	0.946	1.00
226_E	232_E	0.943	1.00
170_L	174_S	0.939	1.00
230_L	260_A	0.930	1.00
192_A	197_A	0.927	1.00
214_K	220_H	0.925	1.00
42_V	129_F	0.920	1.00
129_F	330_T	0.919	1.00
41_A	348_M	0.915	1.00
181_M	204_D	0.915	1.00
189_V	200_I	0.914	1.00
13_V	25_L	0.912	1.00
178_I	188_A	0.912	1.00
79_V	83_V	0.910	1.00
336_R	347_V	0.909	1.00
158_F	306_G	0.906	1.00
164_A	271_V	0.905	1.00
237_T	241_G	0.900	1.00
84_D	137_Q	0.898	1.00
13_V	67_I	0.897	1.00
49_L	337_A	0.895	1.00
83_V	137_Q	0.893	1.00
286_I	293_I	0.893	1.00
178_I	192_A	0.891	1.00
27_V	78_A	0.887	1.00
247_E	250_G	0.883	1.00
129_F	349_V	0.881	1.00
256_Q	260_A	0.879	1.00
335_E	338_L	0.878	1.00
66_F	126_D	0.876	1.00
233_I	242_V	0.868	1.00
25_L	126_D	0.866	1.00
87_K	142_L	0.866	1.00
33_D	80_G	0.865	1.00
205_L	225_R	0.865	1.00
206_E	209_R	0.864	1.00
285_F	289_N	0.863	1.00
179_M	245_A	0.862	1.00
175_T	242_V	0.861	1.00
230_L	257_S	0.858	1.00
43_G	71_E	0.855	1.00
191_A	306_G	0.855	1.00
181_M	213_A	0.853	1.00
162_I	305_K	0.852	1.00
38_K	131_Q	0.847	1.00
208_L	211_E	0.841	1.00
177_A	261_S	0.841	1.00
15_H	19_E	0.840	1.00
181_M	189_V	0.840	1.00
201_I	222_I	0.840	1.00
29_D	36_L	0.838	1.00
186_L	212_A	0.836	1.00
206_E	223_N	0.835	1.00
203_T	224_I	0.833	1.00
11_A	67_I	0.832	1.00
257_S	260_A	0.832	1.00
209_R	344_C	0.824	1.00
72_C	133_I	0.822	1.00
164_A	246_W	0.820	1.00
27_V	77_A	0.818	1.00
337_A	347_V	0.817	1.00
317_T	320_L	0.816	1.00
204_D	221_I	0.814	1.00
305_K	309_F	0.805	1.00
174_S	244_V	0.803	1.00
12_A	20_I	0.791	1.00
145_D	311_A	0.790	1.00
230_L	234_K	0.789	1.00
93_A	307_I	0.786	1.00
33_D	81_S	0.785	1.00
202_V	213_A	0.784	1.00
44_I	337_A	0.784	1.00
165_A	192_A	0.781	1.00
45_C	48_D	0.781	1.00
9_M	28_P	0.780	1.00
325_Y	329_Q	0.777	1.00
10_K	22_I	0.775	1.00
159_S	302_T	0.772	1.00
237_T	240_R	0.771	1.00
213_A	218_A	0.771	1.00
265_G	290_E	0.769	1.00
12_A	331_Q	0.767	1.00
161_G	187_M	0.762	1.00
191_A	309_F	0.749	1.00
201_I	236_I	0.747	1.00
229_A	257_S	0.745	1.00
31_N	134_K	0.743	1.00
147_L	310_L	0.741	1.00
205_L	213_A	0.739	1.00
161_G	184_V	0.739	1.00
166_A	191_A	0.733	1.00
176_I	197_A	0.731	1.00
94_V	135_M	0.730	1.00
228_D	257_S	0.729	1.00
22_I	327_L	0.725	1.00
309_F	313_G	0.725	1.00
245_A	268_L	0.723	1.00
201_I	233_I	0.723	1.00
195_F	305_K	0.722	1.00
170_L	244_V	0.722	1.00
30_I	78_A	0.720	1.00
164_A	188_A	0.719	1.00
230_L	261_S	0.719	1.00
47_S	70_H	0.715	1.00
44_I	129_F	0.715	1.00
9_M	131_Q	0.712	1.00
92_V	140_V	0.711	1.00
79_V	87_K	0.710	1.00
231_E	234_K	0.707	1.00
258_A	268_L	0.707	1.00
163_H	290_E	0.706	1.00
309_F	312_S	0.703	1.00
248_T	271_V	0.700	1.00
286_I	291_I	0.699	1.00
179_M	254_A	0.698	1.00
73_A	153_A	0.694	1.00
336_R	339_Q	0.693	1.00
30_I	80_G	0.693	1.00
25_L	67_I	0.692	1.00
270_I	293_I	0.690	1.00
141_F	304_P	0.690	1.00
325_Y	349_V	0.689	1.00
282_N	285_F	0.687	1.00
93_A	143_I	0.687	1.00
9_M	130_V	0.683	1.00
192_A	200_I	0.682	1.00
215_K	316_D	0.682	1.00
35_V	137_Q	0.680	1.00
323_D	332_D	0.679	1.00
242_V	245_A	0.679	1.00
157_P	183_P	0.673	1.00
169_K	267_K	0.671	1.00
307_I	311_A	0.671	1.00
14_M	19_E	0.671	1.00
169_K	294_Y	0.667	1.00
160_V	184_V	0.662	1.00
286_I	295_G	0.660	1.00
240_R	263_R	0.660	1.00
200_I	219_T	0.659	1.00
321_V	324_Q	0.659	1.00
325_Y	347_V	0.658	1.00
91_R	146_S	0.656	1.00
244_V	269_A	0.656	1.00
198_G	201_I	0.656	1.00
234_K	237_T	0.654	1.00
197_A	200_I	0.649	1.00
137_Q	140_V	0.649	1.00
18_R	335_E	0.648	1.00
156_E	160_V	0.648	1.00
161_G	165_A	0.647	1.00
175_T	240_R	0.647	1.00
323_D	347_V	0.646	1.00
238_N	241_G	0.646	1.00
90_D	145_D	0.646	1.00
264_R	289_N	0.645	1.00
197_A	244_V	0.644	1.00
46_G	50_H	0.641	1.00
178_I	202_V	0.638	1.00
35_V	76_I	0.635	1.00
141_F	307_I	0.635	1.00
85_Q	142_L	0.634	1.00
233_I	261_S	0.633	1.00
73_A	143_I	0.633	1.00
162_I	306_G	0.630	1.00
204_D	223_N	0.629	1.00
256_Q	278_E	0.628	1.00
141_F	303_Y	0.626	1.00
73_A	91_R	0.625	1.00
212_A	216_M	0.624	1.00
144_P	311_A	0.623	1.00
128_A	133_I	0.621	1.00
255_L	268_L	0.621	1.00
37_I	94_V	0.617	1.00
45_C	157_P	0.616	1.00
336_R	343_E	0.616	1.00
173_G	198_G	0.616	1.00
303_Y	307_I	0.613	1.00
334_M	338_L	0.612	1.00
189_V	216_M	0.611	1.00
162_I	309_F	0.610	1.00
167_R	292_D	0.609	1.00
204_D	224_I	0.608	1.00
256_Q	285_F	0.607	1.00
41_A	73_A	0.604	1.00
210_L	224_I	0.603	1.00
41_A	324_Q	0.603	1.00
169_K	292_D	0.603	1.00
247_E	268_L	0.603	1.00
193_K	200_I	0.602	1.00
40_M	350_Y	0.602	1.00
16_N	21_K	0.602	1.00
93_A	156_E	0.601	1.00
251_N	254_A	0.600	1.00
168_T	267_K	0.596	1.00
85_Q	88_V	0.594	1.00
28_P	134_K	0.594	1.00
188_A	271_V	0.592	1.00
204_D	213_A	0.591	1.00
191_A	195_F	0.589	1.00
242_V	261_S	0.586	1.00
30_I	82_S	0.586	1.00
47_S	51_Y	0.586	1.00
148_S	152_A	0.584	1.00
278_E	282_N	0.583	1.00
220_H	232_E	0.583	1.00
203_T	222_I	0.583	1.00
244_V	267_K	0.583	1.00
210_L	213_A	0.583	1.00
252_P	256_Q	0.581	1.00
95_E	141_F	0.579	1.00
186_L	320_L	0.579	1.00
190_A	216_M	0.578	1.00
33_D	138_D	0.577	1.00
212_A	320_L	0.577	1.00
39_V	42_V	0.575	1.00
155_I	306_G	0.571	1.00
245_A	261_S	0.570	1.00
229_A	233_I	0.565	1.00
176_I	244_V	0.565	1.00
247_E	272_G	0.562	1.00
218_A	221_I	0.560	1.00
279_I	282_N	0.559	1.00
63_E	66_F	0.558	1.00
160_V	271_V	0.558	1.00
49_L	338_L	0.558	1.00
301_N	304_P	0.555	1.00
46_G	182_G	0.554	1.00
164_A	296_I	0.554	1.00
222_I	236_I	0.553	1.00
290_E	300_A	0.553	1.00
62_V	66_F	0.550	1.00
269_A	296_I	0.549	1.00
301_N	305_K	0.548	1.00
28_P	132_Y	0.547	1.00
84_D	87_K	0.547	1.00
28_P	36_L	0.546	1.00
162_I	302_T	0.546	1.00
37_I	140_V	0.545	1.00
157_P	187_M	0.544	1.00
177_A	245_A	0.544	1.00
47_S	50_H	0.542	1.00
234_K	241_G	0.541	1.00
19_E	52_Y	0.539	1.00
285_F	291_I	0.539	1.00
343_E	347_V	0.539	1.00
79_V	90_D	0.539	1.00
45_C	346_K	0.538	1.00
254_A	258_A	0.538	1.00
256_Q	280_P	0.537	1.00
94_V	140_V	0.532	1.00
50_H	56_R	0.530	1.00
165_A	191_A	0.529	1.00
27_V	134_K	0.527	1.00
86_F	137_Q	0.526	1.00
42_V	349_V	0.526	1.00
201_I	237_T	0.526	1.00
69_G	129_F	0.524	1.00
189_V	213_A	0.522	1.00
205_L	223_N	0.521	1.00
154_L	317_T	0.519	1.00
222_I	232_E	0.519	1.00
152_A	156_E	0.518	1.00
154_L	348_M	0.517	1.00
37_I	72_C	0.515	1.00
175_T	237_T	0.515	1.00
214_K	218_A	0.513	1.00
187_M	191_A	0.513	1.00
39_V	94_V	0.511	1.00
73_A	152_A	0.510	1.00
94_V	128_A	0.509	1.00
98_V	139_F	0.509	1.00
19_E	331_Q	0.507	1.00
22_I	330_T	0.507	1.00
167_R	302_T	0.506	1.00
339_Q	343_E	0.506	1.00
222_I	227_Q	0.505	1.00
49_L	53_T	0.505	1.00
322_T	345_L	0.504	1.00
30_I	33_D	0.504	1.00
213_A	221_I	0.504	1.00
310_L	315_V	0.502	1.00
313_G	316_D	0.502	1.00
323_D	344_C	0.501	1.00
173_G	197_A	0.501	1.00
67_I	127_G	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3m6iA	4	0.9773	100	0.147	Contact Map
4ej6A	1	0.9603	100	0.153	Contact Map
4ilkA	2	0.9547	100	0.157	Contact Map
3ukoA	4	0.9802	100	0.171	Contact Map
4gi2A	2	0.983	100	0.172	Contact Map
1h2bA	4	0.9462	100	0.177	Contact Map
4oh1A	4	0.949	100	0.18	Contact Map
2dq4A	4	0.9547	100	0.18	Contact Map
1f8fA	4	0.9575	100	0.181	Contact Map
1e3jA	4	0.9688	100	0.183	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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