YMXG - BACSU - GREMLIN Contacts

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YMXG - Uncharacterized zinc protease YmxG

UniProt:	Q04805	Sequences: MIKRYTCQNGVRIVLENNPTVRSVAIGVWIGTGSRHETPEINGISHFLEHMFFKGTSTKSAREIAESFDRIGGQVNAFTSKEYTCYYAKVLDEHANYALDVLADMFFHSTFDENELKKEKNVVYEEIKMYEDAPDDIVHDLLSKATYGNHSLGYPILGTEETLASFNGDSLRQYMHDYYTPDRVVISVAGNISDSFIKDVEKWFGSYEAKGKATGLEKPEFHTEKLTRKKETEQAHLCLGFKGLEVGHERIYDLIVLNNVLGGSMSSRLFQDVREDKGLAYSVYSYHSSYEDSGMLTIYGGTGANQLQQLSETIQETLATLKRDGITSKELENSKEQMKGSLMLSLESTNSKMSRNGKNELLLGKHKTLDEIINELNAVNLERVNGLARQLFTEDYALALISPSGNMPS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	409 (393)
Sequences:	16551 (12758)
Seq/√Len:	643.6

ECOLI - PTRA YHJJ PQQL
BACSU - YMXG YMFF ALBF YMFH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
328_S	332_E	4.428	1.00
317_T	320_T	4.098	1.00
168_G	172_R	3.697	1.00
268_R	330_E	3.592	1.00
320_T	324_D	3.497	1.00
113_E	117_K	3.422	1.00
380_N	383_R	3.201	1.00
383_R	386_G	3.127	1.00
339_K	377_N	3.025	1.00
15_L	192_I	2.995	1.00
306_Q	309_Q	2.941	1.00
319_A	323_R	2.904	1.00
328_S	381_L	2.845	1.00
272_D	276_D	2.838	1.00
250_R	390_Q	2.774	1.00
169_D	173_Q	2.757	1.00
96_N	199_D	2.746	1.00
57_S	108_H	2.744	1.00
124_Y	164_A	2.618	1.00
258_N	285_S	2.617	1.00
142_L	240_G	2.605	1.00
60_S	63_E	2.503	1.00
41_I	170_S	2.330	1.00
327_T	330_E	2.325	1.00
197_I	201_E	2.252	1.00
272_D	277_K	2.226	1.00
381_L	385_N	2.224	1.00
8_Q	201_E	2.212	1.00
322_K	389_R	2.203	1.00
188_V	196_F	2.167	1.00
173_Q	177_D	2.164	1.00
104_D	108_H	2.163	1.00
257_L	388_A	2.162	1.00
277_K	313_T	2.095	1.00
117_K	120_K	2.082	1.00
312_E	316_E	2.050	1.00
30_I	184_V	2.038	1.00
272_D	317_T	2.024	1.00
386_G	390_Q	1.999	1.00
260_V	326_I	1.995	1.00
90_V	98_A	1.987	1.00
58_T	100_D	1.958	1.00
313_T	316_E	1.954	1.00
167_N	170_S	1.951	1.00
382_E	386_G	1.920	1.00
325_G	385_N	1.893	1.00
298_I	314_I	1.841	1.00
78_F	85_C	1.832	1.00
141_L	144_K	1.810	1.00
250_R	386_G	1.809	1.00
28_V	186_I	1.797	1.00
45_S	174_Y	1.795	1.00
274_R	281_Y	1.786	1.00
277_K	309_Q	1.777	1.00
253_D	387_L	1.756	1.00
308_Q	312_E	1.740	1.00
371_E	374_N	1.740	1.00
160_E	164_A	1.724	1.00
195_S	198_K	1.715	1.00
159_T	162_T	1.712	1.00
319_A	322_K	1.712	1.00
59_K	104_D	1.699	1.00
58_T	104_D	1.689	1.00
331_L	381_L	1.683	1.00
309_Q	312_E	1.680	1.00
88_A	98_A	1.672	1.00
124_Y	160_E	1.661	1.00
332_E	335_K	1.660	1.00
67_S	97_Y	1.660	1.00
96_N	202_K	1.659	1.00
40_E	170_S	1.655	1.00
84_T	179_Y	1.646	1.00
112_D	115_E	1.641	1.00
374_N	377_N	1.629	1.00
128_K	160_E	1.628	1.00
68_F	73_G	1.624	1.00
385_N	389_R	1.614	1.00
332_E	336_E	1.603	1.00
239_L	315_Q	1.600	1.00
382_E	385_N	1.593	1.00
198_K	201_E	1.591	1.00
256_V	379_V	1.566	1.00
16_E	352_K	1.561	1.00
59_K	67_S	1.551	1.00
12_R	185_V	1.535	1.00
286_Y	297_T	1.529	1.00
107_F	206_S	1.528	1.00
198_K	202_K	1.527	1.00
71_I	97_Y	1.515	1.00
316_E	320_T	1.500	1.00
57_S	110_T	1.483	1.00
170_S	173_Q	1.473	1.00
56_T	104_D	1.457	1.00
172_R	176_H	1.456	1.00
173_Q	176_H	1.432	1.00
253_D	383_R	1.418	1.00
48_L	111_F	1.408	1.00
14_V	185_V	1.406	1.00
169_D	172_R	1.397	1.00
38_T	41_I	1.388	1.00
300_G	310_L	1.385	1.00
374_N	378_A	1.377	1.00
268_R	317_T	1.375	1.00
321_L	326_I	1.356	1.00
47_F	116_L	1.354	1.00
253_D	379_V	1.348	1.00
371_E	375_E	1.348	1.00
241_F	315_Q	1.348	1.00
19_P	191_N	1.345	1.00
82_E	152_L	1.345	1.00
97_Y	100_D	1.344	1.00
17_N	193_S	1.338	1.00
284_Y	299_Y	1.333	1.00
11_V	186_I	1.324	1.00
103_A	204_F	1.324	1.00
249_E	383_R	1.322	1.00
31_G	183_R	1.319	1.00
367_K	371_E	1.319	1.00
235_A	307_L	1.313	1.00
46_H	50_H	1.312	1.00
273_V	280_A	1.287	1.00
116_L	168_G	1.283	1.00
58_T	108_H	1.283	1.00
11_V	184_V	1.280	1.00
96_N	195_S	1.278	1.00
199_D	203_W	1.278	1.00
116_L	171_L	1.267	1.00
386_G	389_R	1.264	1.00
249_E	375_E	1.260	1.00
195_S	199_D	1.256	1.00
44_I	166_F	1.251	1.00
96_N	203_W	1.233	1.00
189_A	353_M	1.232	1.00
335_K	376_L	1.232	1.00
254_L	387_L	1.216	1.00
29_W	357_G	1.216	1.00
271_Q	276_D	1.209	1.00
221_F	224_E	1.206	1.00
120_K	163_L	1.206	1.00
192_I	196_F	1.205	1.00
28_V	184_V	1.203	1.00
199_D	202_K	1.196	1.00
181_P	207_Y	1.188	1.00
300_G	314_I	1.186	1.00
54_K	119_E	1.181	1.00
35_R	292_D	1.181	1.00
186_I	200_V	1.178	1.00
201_E	205_G	1.178	1.00
272_D	313_T	1.175	1.00
113_E	168_G	1.173	1.00
26_I	188_V	1.168	1.00
109_S	175_M	1.167	1.00
99_L	199_D	1.158	1.00
258_N	296_L	1.146	1.00
280_A	283_V	1.136	1.00
120_K	124_Y	1.136	1.00
302_T	310_L	1.133	1.00
94_H	97_Y	1.122	1.00
375_E	378_A	1.122	1.00
365_K	371_E	1.118	1.00
257_L	387_L	1.112	1.00
194_D	197_I	1.111	1.00
71_I	94_H	1.110	1.00
30_I	106_F	1.108	1.00
67_S	70_R	1.108	1.00
250_R	391_L	1.107	1.00
92_D	191_N	1.101	1.00
34_S	156_I	1.095	1.00
100_D	203_W	1.095	1.00
12_R	360_E	1.094	1.00
188_V	192_I	1.087	1.00
63_E	66_E	1.083	1.00
47_F	120_K	1.076	1.00
265_M	270_F	1.075	1.00
280_A	300_G	1.074	1.00
15_L	196_F	1.073	1.00
103_A	107_F	1.072	1.00
115_E	118_K	1.069	1.00
51_M	171_L	1.067	1.00
252_Y	375_E	1.062	1.00
46_H	49_E	1.057	1.00
64_I	105_M	1.057	1.00
32_T	174_Y	1.057	1.00
39_P	154_Y	1.054	1.00
348_S	351_S	1.052	1.00
370_D	374_N	1.047	1.00
48_L	171_L	1.045	1.00
14_V	360_E	1.041	1.00
182_D	210_K	1.041	1.00
127_I	157_L	1.039	1.00
326_I	331_L	1.033	1.00
339_K	373_I	1.033	1.00
243_G	287_H	1.029	1.00
194_D	198_K	1.028	1.00
63_E	67_S	1.026	1.00
125_E	128_K	1.026	1.00
22_R	191_N	1.025	1.00
102_L	105_M	1.024	1.00
185_V	360_E	1.023	1.00
68_F	75_V	1.018	1.00
311_S	315_Q	1.016	1.00
25_A	89_K	1.015	1.00
220_E	224_E	1.010	1.00
259_N	334_S	1.009	1.00
24_V	190_G	1.004	1.00
50_H	119_E	1.000	1.00
340_G	344_L	0.997	1.00
257_L	384_V	0.996	1.00
343_M	373_I	0.990	1.00
245_E	248_H	0.989	1.00
228_R	231_E	0.988	1.00
368_T	371_E	0.987	1.00
146_T	295_M	0.980	1.00
40_E	162_T	0.980	1.00
221_F	225_K	0.979	1.00
52_F	109_S	0.974	1.00
315_Q	319_A	0.972	1.00
131_E	160_E	0.972	1.00
56_T	109_S	0.966	1.00
260_V	334_S	0.955	1.00
331_L	335_K	0.955	1.00
24_V	92_D	0.953	1.00
124_Y	128_K	0.952	1.00
117_K	121_N	0.949	1.00
393_T	396_Y	0.948	1.00
111_F	116_L	0.928	1.00
219_P	223_T	0.928	1.00
99_L	200_V	0.927	1.00
124_Y	163_L	0.927	1.00
43_G	158_G	0.925	1.00
46_H	126_E	0.924	1.00
95_A	199_D	0.921	1.00
239_L	311_S	0.918	1.00
273_V	313_T	0.917	1.00
86_Y	179_Y	0.916	1.00
88_A	102_L	0.914	1.00
50_H	79_T	0.912	1.00
51_M	116_L	0.912	1.00
372_I	376_L	0.910	1.00
273_V	283_V	0.901	1.00
184_V	207_Y	0.897	1.00
323_R	389_R	0.895	1.00
11_V	181_P	0.891	1.00
316_E	319_A	0.888	1.00
119_E	122_V	0.888	1.00
335_K	377_N	0.888	1.00
388_A	392_F	0.884	1.00
96_N	100_D	0.884	1.00
64_I	101_V	0.881	1.00
326_I	381_L	0.881	1.00
254_L	391_L	0.879	1.00
103_A	203_W	0.878	1.00
142_L	238_C	0.873	1.00
46_H	79_T	0.872	1.00
271_Q	275_E	0.870	1.00
26_I	88_A	0.870	1.00
41_I	177_D	0.866	1.00
16_E	189_A	0.865	1.00
49_E	79_T	0.863	1.00
285_S	296_L	0.862	1.00
373_I	377_N	0.861	1.00
59_K	100_D	0.857	1.00
252_Y	379_V	0.856	1.00
29_W	85_C	0.855	1.00
222_H	225_K	0.852	1.00
200_V	203_W	0.852	1.00
313_T	317_T	0.852	1.00
95_A	196_F	0.851	1.00
219_P	225_K	0.850	1.00
182_D	209_A	0.847	1.00
240_G	297_T	0.847	1.00
255_I	372_I	0.844	1.00
27_G	85_C	0.842	1.00
256_V	331_L	0.841	1.00
31_G	291_E	0.838	1.00
260_V	268_R	0.834	1.00
81_K	143_S	0.833	1.00
127_I	163_L	0.832	1.00
309_Q	313_T	0.831	1.00
50_H	126_E	0.830	1.00
324_D	385_N	0.826	1.00
12_R	31_G	0.824	1.00
67_S	71_I	0.822	1.00
249_E	253_D	0.822	1.00
7_C	13_I	0.821	1.00
180_T	210_K	0.817	1.00
133_A	136_D	0.814	1.00
335_K	339_K	0.810	1.00
329_K	333_N	0.808	1.00
13_I	197_I	0.805	1.00
148_G	153_G	0.802	1.00
28_V	106_F	0.801	1.00
174_Y	178_Y	0.799	1.00
317_T	321_L	0.796	1.00
329_K	332_E	0.792	1.00
270_F	275_E	0.792	1.00
283_V	314_I	0.790	1.00
236_H	301_G	0.788	1.00
47_F	123_V	0.787	1.00
44_I	48_L	0.781	1.00
180_T	183_R	0.780	1.00
279_L	306_Q	0.779	1.00
327_T	381_L	0.778	1.00
42_N	162_T	0.776	1.00
325_G	381_L	0.775	1.00
50_H	76_N	0.774	1.00
196_F	200_V	0.772	1.00
187_S	356_N	0.765	1.00
50_H	53_F	0.764	1.00
114_N	118_K	0.764	1.00
365_K	368_T	0.760	1.00
52_F	105_M	0.759	1.00
121_N	124_Y	0.759	1.00
47_F	171_L	0.759	1.00
41_I	166_F	0.758	1.00
308_Q	311_S	0.757	1.00
67_S	101_V	0.755	1.00
303_G	306_Q	0.752	1.00
258_N	262_G	0.751	1.00
73_G	90_V	0.750	1.00
99_L	203_W	0.748	1.00
46_H	123_V	0.748	1.00
59_K	64_I	0.748	1.00
123_V	163_L	0.741	1.00
283_V	298_I	0.740	1.00
331_L	379_V	0.737	1.00
37_E	43_G	0.736	1.00
339_K	343_M	0.734	1.00
32_T	36_H	0.734	1.00
138_V	238_C	0.731	1.00
149_N	153_G	0.729	1.00
78_F	83_Y	0.725	1.00
237_L	300_G	0.725	1.00
320_T	325_G	0.725	1.00
270_F	274_R	0.725	1.00
244_L	391_L	0.725	1.00
15_L	200_V	0.725	1.00
141_L	145_A	0.724	1.00
262_G	285_S	0.721	1.00
370_D	373_I	0.720	1.00
28_V	204_F	0.719	1.00
322_K	325_G	0.718	1.00
249_E	378_A	0.716	1.00
9_N	205_G	0.713	1.00
268_R	327_T	0.713	1.00
103_A	206_S	0.712	1.00
169_D	176_H	0.710	1.00
116_L	166_F	0.710	1.00
50_H	123_V	0.709	1.00
24_V	188_V	0.708	1.00
257_L	321_L	0.708	1.00
77_A	86_Y	0.705	1.00
269_L	283_V	0.702	1.00
162_T	165_S	0.701	1.00
49_E	53_F	0.701	1.00
174_Y	179_Y	0.700	1.00
220_E	223_T	0.697	1.00
34_S	37_E	0.696	1.00
107_F	207_Y	0.695	1.00
334_S	338_M	0.695	1.00
219_P	224_E	0.691	1.00
357_G	361_L	0.691	1.00
337_Q	340_G	0.690	1.00
15_L	188_V	0.688	1.00
179_Y	183_R	0.687	1.00
119_E	123_V	0.685	1.00
9_N	181_P	0.685	1.00
123_V	126_E	0.684	1.00
259_N	337_Q	0.681	1.00
111_F	175_M	0.678	1.00
326_I	385_N	0.674	1.00
182_D	211_G	0.672	1.00
261_L	318_L	0.671	1.00
51_M	54_K	0.670	1.00
236_H	299_Y	0.670	1.00
54_K	115_E	0.669	1.00
260_V	330_E	0.669	1.00
38_T	177_D	0.668	1.00
387_L	391_L	0.666	1.00
259_N	338_M	0.665	1.00
355_R	359_N	0.664	1.00
161_E	165_S	0.664	1.00
162_T	166_F	0.664	1.00
64_I	68_F	0.662	1.00
176_H	210_K	0.661	1.00
32_T	178_Y	0.661	1.00
49_E	77_A	0.659	1.00
171_L	175_M	0.658	1.00
278_G	281_Y	0.655	1.00
50_H	77_A	0.655	1.00
49_E	126_E	0.653	1.00
150_H	153_G	0.653	1.00
146_T	240_G	0.653	1.00
388_A	391_L	0.650	1.00
187_S	353_M	0.648	1.00
59_K	101_V	0.648	1.00
66_E	69_D	0.648	1.00
244_L	248_H	0.647	1.00
41_I	44_I	0.646	1.00
145_A	148_G	0.642	1.00
18_N	349_T	0.641	1.00
253_D	257_L	0.634	1.00
187_S	360_E	0.632	1.00
81_K	156_I	0.632	1.00
18_N	189_A	0.631	1.00
19_P	22_R	0.630	1.00
139_H	143_S	0.627	1.00
220_E	225_K	0.626	1.00
314_I	317_T	0.625	1.00
33_G	43_G	0.623	1.00
256_V	334_S	0.622	1.00
18_N	22_R	0.622	1.00
24_V	192_I	0.621	1.00
232_T	235_A	0.621	1.00
52_F	86_Y	0.619	1.00
322_K	385_N	0.619	1.00
56_T	110_T	0.618	1.00
193_S	196_F	0.617	1.00
41_I	45_S	0.617	1.00
56_T	59_K	0.617	1.00
234_Q	301_G	0.617	1.00
237_L	307_L	0.615	1.00
248_H	391_L	0.615	1.00
66_E	70_R	0.615	1.00
102_L	106_F	0.614	1.00
256_V	338_M	0.614	1.00
22_R	92_D	0.611	1.00
73_G	98_A	0.610	1.00
239_L	398_L	0.609	1.00
79_T	126_E	0.609	1.00
219_P	222_H	0.608	1.00
375_E	379_V	0.607	1.00
161_E	164_A	0.607	1.00
342_L	372_I	0.606	1.00
307_L	311_S	0.605	1.00
58_T	110_T	0.605	1.00
56_T	108_H	0.605	1.00
34_S	81_K	0.604	1.00
79_T	84_T	0.603	1.00
43_G	46_H	0.602	1.00
301_G	304_A	0.602	1.00
24_V	95_A	0.601	1.00
279_L	310_L	0.601	1.00
147_Y	295_M	0.599	1.00
31_G	185_V	0.598	1.00
367_K	370_D	0.596	1.00
254_L	257_L	0.595	1.00
279_L	309_Q	0.593	1.00
50_H	122_V	0.593	1.00
282_S	301_G	0.592	1.00
264_S	267_S	0.591	1.00
54_K	118_K	0.589	1.00
137_I	141_L	0.588	1.00
187_S	357_G	0.588	1.00
147_Y	293_S	0.587	1.00
273_V	314_I	0.586	1.00
238_C	297_T	0.586	1.00
331_L	384_V	0.585	1.00
175_M	179_Y	0.584	1.00
116_L	120_K	0.584	1.00
140_D	144_K	0.584	1.00
237_L	302_T	0.583	1.00
325_G	388_A	0.583	1.00
28_V	102_L	0.582	1.00
45_S	48_L	0.582	1.00
139_H	238_C	0.581	1.00
111_F	168_G	0.579	1.00
11_V	207_Y	0.578	1.00
275_E	280_A	0.576	1.00
11_V	204_F	0.576	1.00
141_L	226_L	0.576	1.00
233_E	236_H	0.575	1.00
168_G	171_L	0.575	1.00
122_V	126_E	0.574	1.00
218_K	221_F	0.574	1.00
257_L	296_L	0.573	1.00
273_V	279_L	0.572	1.00
217_E	220_E	0.572	1.00
262_G	267_S	0.571	1.00
130_Y	136_D	0.571	1.00
203_W	206_S	0.571	1.00
18_N	352_K	0.571	1.00
320_T	323_R	0.570	1.00
264_S	270_F	0.569	1.00
196_F	199_D	0.568	1.00
178_Y	183_R	0.568	1.00
338_M	376_L	0.567	1.00
98_A	102_L	0.566	1.00
172_R	175_M	0.566	1.00
335_K	381_L	0.566	1.00
129_M	133_A	0.566	1.00
92_D	195_S	0.565	1.00
302_T	305_N	0.565	1.00
256_V	384_V	0.564	1.00
7_C	201_E	0.561	1.00
48_L	174_Y	0.561	1.00
19_P	193_S	0.561	1.00
27_G	87_Y	0.560	1.00
272_D	316_E	0.559	1.00
125_E	129_M	0.559	1.00
44_I	170_S	0.559	1.00
257_L	261_L	0.559	1.00
250_R	253_D	0.558	1.00
192_I	200_V	0.558	1.00
387_L	390_Q	0.557	1.00
14_V	187_S	0.555	1.00
155_P	158_G	0.555	1.00
241_F	318_L	0.554	1.00
47_F	163_L	0.554	1.00
270_F	280_A	0.552	1.00
29_W	187_S	0.551	1.00
49_E	122_V	0.551	1.00
86_Y	102_L	0.549	1.00
352_K	356_N	0.549	1.00
49_E	84_T	0.548	1.00
15_L	193_S	0.547	1.00
99_L	196_F	0.547	1.00
26_I	186_I	0.547	1.00
178_Y	181_P	0.546	1.00
259_N	341_S	0.545	1.00
60_S	64_I	0.544	1.00
65_A	75_V	0.544	1.00
100_D	104_D	0.543	1.00
130_Y	157_L	0.542	1.00
46_H	122_V	0.542	1.00
322_K	393_T	0.542	1.00
229_K	233_E	0.542	1.00
59_K	108_H	0.541	1.00
128_K	131_E	0.541	1.00
274_R	280_A	0.541	1.00
270_F	273_V	0.540	1.00
78_F	354_S	0.539	1.00
61_A	115_E	0.539	1.00
57_S	104_D	0.538	1.00
91_L	94_H	0.538	1.00
310_L	314_I	0.537	0.99
106_F	175_M	0.536	0.99
16_E	356_N	0.536	0.99
389_R	393_T	0.534	0.99
155_P	159_T	0.534	0.99
237_L	311_S	0.532	0.99
332_E	377_N	0.531	0.99
46_H	119_E	0.531	0.99
49_E	123_V	0.531	0.99
215_G	218_K	0.530	0.99
146_T	242_K	0.530	0.99
37_E	41_I	0.530	0.99
32_T	84_T	0.530	0.99
226_L	229_K	0.529	0.99
318_L	322_K	0.529	0.99
229_K	232_T	0.528	0.99
268_R	272_D	0.526	0.99
252_Y	376_L	0.525	0.99
248_H	390_Q	0.524	0.99
273_V	278_G	0.523	0.99
100_D	202_K	0.522	0.99
101_V	104_D	0.522	0.99
205_G	208_E	0.521	0.99
384_V	388_A	0.520	0.99
234_Q	281_Y	0.519	0.99
181_P	208_E	0.518	0.99
267_S	270_F	0.516	0.99
256_V	335_K	0.515	0.99
88_A	91_L	0.515	0.99
330_E	333_N	0.514	0.99
227_T	230_K	0.514	0.99
231_E	235_A	0.514	0.99
188_V	200_V	0.512	0.99
328_S	382_E	0.512	0.99
27_G	353_M	0.512	0.99
321_L	325_G	0.511	0.99
328_S	335_K	0.510	0.99
280_A	310_L	0.508	0.99
378_A	383_R	0.508	0.99
337_Q	341_S	0.506	0.99
385_N	388_A	0.506	0.99
231_E	234_Q	0.506	0.99
348_S	352_K	0.503	0.99
47_F	51_M	0.503	0.99
30_I	84_T	0.503	0.99
42_N	154_Y	0.503	0.99
235_A	238_C	0.502	0.99
322_K	392_F	0.502	0.99
260_V	384_V	0.502	0.99
119_E	158_G	0.502	0.99
287_H	296_L	0.502	0.99
272_D	320_T	0.502	0.99
347_E	351_S	0.502	0.99
139_H	286_Y	0.500	0.99
197_I	200_V	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3hdiA	2	0.9976	100	0.075	Contact Map
3eoqA	2	0.9878	100	0.082	Contact Map
1hr6B	1	0.9976	100	0.119	Contact Map
3amiA	2	0.9927	100	0.13	Contact Map
1hr6A	1	0.9927	100	0.135	Contact Map
1pp9A	1	0.9927	100	0.136	Contact Map
4nnzA	2	0.9389	100	0.138	Contact Map
3gwbA	2	0.9902	100	0.148	Contact Map
1pp9B	2	0.9878	100	0.152	Contact Map
3amjB	1	0.9829	100	0.163	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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