AK1 - BACSU - GREMLIN Contacts

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AK1 - Aspartokinase 1

UniProt:	Q04795	Sequences: MKIIVQKFGGTSVKDDKGRKLALGHIKEAISEGYKVVVVVSAMGRKGDPYATDSLLGLLYGDQSAISPREQDLLLSCGETISSVVFTSMLLDNGVKAAALTGAQAGFLTNDQHTNAKIIEMKPERLFSVLANHDAVVVAGFQGATEKGDTTTIGRGGSDTSAAALGAAVDAEYIDIFTDVEGVMTADPRVVENAKPLPVVTYTEICNLAYQGAKVISPRAVEIAMQAKVPIRVRSTYSNDKGTLVTSHHSSKVGSDVFERLITGIAHVKDVTQFKVPAKIGQYNVQTEVFKAMANAGISVDFFNITPSEIVYTVAGNKTETAQRILMDMGYDPMVTRNCAKVSAVGAGIMGVPGVTSKIVSALSEKEIPILQSADSHTTIWVLVHEADMVPAVNALHEVFELSK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	404 (385)
Sequences:	4790 (2757)
Seq/√Len:	140.5

ECOLI - AK1H AK2H AK3
BACSU - AK1 AK2 AK3
HALSA - Q9HMV1
SULSO - Q97ZL7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
95_V	135_A	4.355	1.00
96_K	134_D	4.137	1.00
145_T	149_D	3.914	1.00
358_K	399_V	3.881	1.00
388_D	391_P	3.653	1.00
138_V	165_L	3.422	1.00
37_V	169_V	3.368	1.00
166_G	174_I	3.132	1.00
208_L	345_V	2.870	1.00
40_V	83_S	2.797	1.00
100_L	129_V	2.770	1.00
361_S	365_E	2.749	1.00
27_K	93_N	2.730	1.00
199_V	246_T	2.693	1.00
323_Q	327_M	2.671	1.00
87_T	97_A	2.644	1.00
20_K	93_N	2.607	1.00
173_Y	232_R	2.568	1.00
24_G	93_N	2.545	1.00
22_A	86_F	2.537	1.00
181_E	238_S	2.525	1.00
232_R	244_L	2.502	1.00
338_N	386_E	2.481	1.00
272_T	316_G	2.464	1.00
267_H	389_M	2.441	1.00
27_K	95_V	2.390	1.00
98_A	134_D	2.374	1.00
21_L	24_G	2.350	1.00
291_K	295_N	2.340	1.00
342_V	396_L	2.223	1.00
83_S	139_A	2.196	1.00
26_I	38_V	2.188	1.00
111_D	145_T	2.168	1.00
11_T	14_K	2.142	1.00
51_A	54_S	2.138	1.00
203_T	225_M	2.103	1.00
269_K	390_V	2.053	1.00
349_I	354_G	2.040	1.00
56_L	71_Q	2.032	1.00
198_P	241_K	2.014	1.00
28_E	239_N	1.939	1.00
109_T	151_T	1.921	1.00
27_K	135_A	1.907	1.00
56_L	75_L	1.897	1.00
193_N	398_E	1.894	1.00
11_T	44_G	1.838	1.00
76_S	150_T	1.836	1.00
170_D	227_A	1.826	1.00
91_L	96_K	1.820	1.00
124_E	128_S	1.806	1.00
19_R	86_F	1.805	1.00
228_K	247_S	1.793	1.00
366_K	391_P	1.791	1.00
319_T	335_V	1.788	1.00
269_K	386_E	1.774	1.00
40_V	86_F	1.760	1.00
26_I	90_L	1.756	1.00
45_R	51_A	1.735	1.00
165_L	169_V	1.732	1.00
175_D	232_R	1.728	1.00
163_A	174_I	1.718	1.00
385_H	388_D	1.700	1.00
72_D	114_T	1.696	1.00
224_A	231_I	1.695	1.00
27_K	90_L	1.690	1.00
123_P	127_F	1.676	1.00
316_G	337_R	1.674	1.00
24_G	27_K	1.651	1.00
363_L	392_A	1.649	1.00
327_M	330_G	1.649	1.00
37_V	138_V	1.647	1.00
391_P	394_N	1.647	1.00
365_E	399_V	1.644	1.00
102_G	105_A	1.622	1.00
197_L	200_V	1.620	1.00
45_R	214_K	1.611	1.00
23_L	93_N	1.609	1.00
287_T	294_A	1.602	1.00
98_A	136_V	1.576	1.00
125_R	129_V	1.557	1.00
178_T	233_V	1.546	1.00
369_P	373_S	1.542	1.00
295_N	328_D	1.530	1.00
181_E	184_M	1.509	1.00
286_Q	310_I	1.483	1.00
29_A	175_D	1.481	1.00
265_I	393_V	1.477	1.00
126_L	136_V	1.457	1.00
89_M	93_N	1.448	1.00
71_Q	75_L	1.444	1.00
44_G	53_D	1.429	1.00
109_T	143_G	1.427	1.00
57_G	60_Y	1.425	1.00
8_F	25_H	1.420	1.00
25_H	239_N	1.406	1.00
103_A	150_T	1.401	1.00
323_Q	335_V	1.392	1.00
359_I	382_V	1.381	1.00
362_A	399_V	1.381	1.00
324_R	328_D	1.367	1.00
45_R	54_S	1.360	1.00
366_K	395_A	1.346	1.00
18_G	21_L	1.341	1.00
118_I	164_A	1.340	1.00
340_A	389_M	1.335	1.00
359_I	396_L	1.329	1.00
20_K	92_D	1.328	1.00
34_Y	172_E	1.326	1.00
69_R	149_D	1.324	1.00
316_G	386_E	1.320	1.00
302_F	383_L	1.319	1.00
77_C	81_I	1.309	1.00
67_S	91_L	1.298	1.00
24_G	28_E	1.287	1.00
274_F	322_A	1.284	1.00
14_K	44_G	1.280	1.00
21_L	236_T	1.274	1.00
100_L	136_V	1.269	1.00
4_I	34_Y	1.266	1.00
292_A	325_I	1.263	1.00
29_A	32_E	1.261	1.00
28_E	32_E	1.253	1.00
181_E	235_S	1.238	1.00
57_G	61_G	1.237	1.00
39_V	165_L	1.233	1.00
175_D	234_R	1.227	1.00
186_A	267_H	1.218	1.00
128_S	131_A	1.217	1.00
185_T	397_H	1.216	1.00
342_V	392_A	1.210	1.00
272_T	319_T	1.208	1.00
121_M	125_R	1.204	1.00
19_R	89_M	1.204	1.00
279_K	284_N	1.199	1.00
342_V	393_V	1.191	1.00
128_S	132_N	1.190	1.00
35_K	131_A	1.187	1.00
58_L	62_D	1.184	1.00
116_A	151_T	1.181	1.00
174_I	224_A	1.174	1.00
390_V	394_N	1.170	1.00
90_L	95_V	1.168	1.00
23_L	89_M	1.161	0.99
6_Q	29_A	1.149	0.99
126_L	165_L	1.149	0.99
26_I	135_A	1.148	0.99
110_N	116_A	1.146	0.99
15_D	18_G	1.145	0.99
362_A	395_A	1.140	0.99
96_K	133_H	1.137	0.99
113_H	116_A	1.131	0.99
296_A	328_D	1.130	0.99
12_S	236_T	1.124	0.99
3_I	172_E	1.120	0.99
74_L	84_V	1.112	0.99
103_A	144_A	1.107	0.99
23_L	27_K	1.104	0.99
270_D	316_G	1.102	0.99
108_L	146_E	1.099	0.99
181_E	240_D	1.097	0.99
29_A	36_V	1.094	0.99
90_L	137_V	1.094	0.99
324_R	327_M	1.092	0.99
25_H	236_T	1.092	0.99
200_V	263_T	1.088	0.99
127_F	131_A	1.079	0.99
276_V	289_V	1.078	0.99
190_V	393_V	1.075	0.99
320_E	337_R	1.074	0.99
111_D	147_K	1.071	0.99
361_S	399_V	1.070	0.99
22_A	26_I	1.067	0.99
76_S	80_T	1.066	0.99
107_F	161_S	1.065	0.99
338_N	385_H	1.064	0.99
199_V	244_L	1.063	0.99
286_Q	305_I	1.059	0.99
371_L	385_H	1.057	0.99
301_D	313_T	1.054	0.99
277_P	332_D	1.053	0.99
173_Y	244_L	1.050	0.99
44_G	51_A	1.045	0.99
127_F	170_D	1.043	0.99
87_T	91_L	1.036	0.99
18_G	236_T	1.036	0.99
292_A	296_A	1.035	0.99
59_L	63_Q	1.035	0.99
11_T	45_R	1.033	0.99
274_F	314_V	1.032	0.99
88_S	91_L	1.030	0.99
296_A	321_T	1.028	0.99
275_K	311_V	1.023	0.99
216_I	245_V	1.017	0.99
272_T	337_R	1.012	0.99
51_A	81_I	1.011	0.99
273_Q	371_L	1.010	0.99
186_A	393_V	1.010	0.99
167_A	229_V	1.008	0.99
59_L	74_L	1.008	0.99
42_A	52_T	1.006	0.99
16_D	20_K	1.006	0.99
321_T	329_M	1.005	0.98
59_L	71_Q	0.992	0.98
349_I	355_V	0.986	0.98
11_T	178_T	0.980	0.98
125_R	128_S	0.980	0.98
113_H	145_T	0.973	0.98
298_I	325_I	0.957	0.98
109_T	113_H	0.954	0.98
63_Q	92_D	0.951	0.98
108_L	144_A	0.948	0.98
87_T	99_A	0.945	0.98
119_I	146_E	0.943	0.98
56_L	60_Y	0.932	0.98
98_A	129_V	0.931	0.98
268_V	271_V	0.928	0.97
26_I	86_F	0.927	0.97
102_G	139_A	0.926	0.97
129_V	134_D	0.921	0.97
301_D	341_K	0.916	0.97
344_A	359_I	0.916	0.97
340_A	386_E	0.914	0.97
145_T	151_T	0.909	0.97
6_Q	175_D	0.907	0.97
342_V	384_V	0.905	0.97
83_S	99_A	0.901	0.97
328_D	331_Y	0.901	0.97
26_I	137_V	0.900	0.97
68_P	114_T	0.897	0.97
3_I	35_K	0.897	0.97
37_V	136_V	0.897	0.97
284_N	369_P	0.894	0.97
20_K	89_M	0.893	0.97
354_G	377_H	0.885	0.97
269_K	389_M	0.885	0.97
211_Q	343_S	0.883	0.97
286_Q	303_F	0.883	0.97
279_K	285_V	0.883	0.97
184_M	194_A	0.883	0.97
13_V	40_V	0.881	0.97
110_N	113_H	0.880	0.97
4_I	173_Y	0.879	0.96
37_V	165_L	0.870	0.96
343_S	381_W	0.869	0.96
37_V	130_L	0.867	0.96
350_M	377_H	0.866	0.96
326_L	329_M	0.865	0.96
86_F	137_V	0.864	0.96
102_G	138_V	0.862	0.96
180_V	215_V	0.859	0.96
18_G	237_Y	0.858	0.96
161_S	165_L	0.858	0.96
293_M	300_V	0.856	0.96
356_T	360_V	0.856	0.96
29_A	34_Y	0.856	0.96
199_V	248_H	0.851	0.96
302_F	381_W	0.848	0.96
111_D	116_A	0.847	0.96
315_A	318_K	0.841	0.95
3_I	34_Y	0.841	0.95
19_R	43_M	0.838	0.95
336_T	371_L	0.838	0.95
368_I	392_A	0.838	0.95
109_T	116_A	0.834	0.95
73_L	99_A	0.831	0.95
191_V	393_V	0.828	0.95
326_L	330_G	0.825	0.95
398_E	401_E	0.823	0.95
338_N	387_A	0.820	0.95
261_L	355_V	0.818	0.95
192_E	394_N	0.817	0.95
59_L	62_D	0.817	0.95
101_T	139_A	0.816	0.95
306_T	311_V	0.816	0.95
101_T	105_A	0.816	0.95
72_D	152_T	0.815	0.95
186_A	191_V	0.811	0.95
286_Q	300_V	0.809	0.94
13_V	82_S	0.803	0.94
289_V	310_I	0.801	0.94
366_K	388_D	0.800	0.94
201_T	204_E	0.797	0.94
370_I	373_S	0.795	0.94
369_P	374_A	0.795	0.94
35_K	134_D	0.794	0.94
341_K	381_W	0.793	0.94
21_L	25_H	0.791	0.94
35_K	133_H	0.789	0.94
269_K	340_A	0.789	0.94
110_N	117_K	0.788	0.94
3_I	6_Q	0.786	0.94
84_V	88_S	0.784	0.93
129_V	136_V	0.784	0.93
218_P	223_I	0.782	0.93
267_H	393_V	0.781	0.93
23_L	86_F	0.781	0.93
290_F	300_V	0.777	0.93
108_L	119_I	0.775	0.93
321_T	324_R	0.774	0.93
190_V	267_H	0.774	0.93
339_C	383_L	0.767	0.93
184_M	216_I	0.765	0.93
278_A	307_P	0.764	0.93
159_D	179_D	0.764	0.93
344_A	380_I	0.763	0.93
221_V	231_I	0.762	0.92
86_F	90_L	0.762	0.92
264_G	345_V	0.760	0.92
318_K	321_T	0.757	0.92
53_D	155_R	0.755	0.92
219_R	222_E	0.754	0.92
186_A	265_I	0.749	0.92
115_N	318_K	0.748	0.92
23_L	90_L	0.748	0.92
368_I	391_P	0.747	0.92
11_T	51_A	0.743	0.92
216_I	231_I	0.740	0.91
11_T	15_D	0.739	0.91
216_I	220_A	0.738	0.91
91_L	97_A	0.738	0.91
291_K	361_S	0.737	0.91
199_V	250_S	0.736	0.91
287_T	291_K	0.736	0.91
357_S	364_S	0.735	0.91
364_S	369_P	0.734	0.91
221_V	245_V	0.733	0.91
102_G	142_Q	0.730	0.91
108_L	122_K	0.730	0.91
327_M	332_D	0.722	0.90
285_V	310_I	0.720	0.90
277_P	334_M	0.719	0.90
201_T	247_S	0.716	0.90
37_V	161_S	0.715	0.90
363_L	368_I	0.714	0.90
99_A	139_A	0.713	0.90
66_I	71_Q	0.713	0.90
62_D	92_D	0.712	0.90
97_A	137_V	0.711	0.90
284_N	305_I	0.710	0.90
108_L	120_E	0.707	0.89
293_M	312_Y	0.704	0.89
72_D	143_G	0.704	0.89
311_V	372_Q	0.701	0.89
15_D	43_M	0.698	0.89
44_G	214_K	0.698	0.89
362_A	366_K	0.696	0.89
271_V	315_A	0.696	0.89
80_T	150_T	0.696	0.89
272_T	314_V	0.695	0.89
270_D	317_N	0.693	0.88
321_T	328_D	0.692	0.88
302_F	374_A	0.692	0.88
8_F	12_S	0.690	0.88
326_L	333_P	0.688	0.88
293_M	298_I	0.686	0.88
359_I	380_I	0.685	0.88
7_K	10_G	0.684	0.88
110_N	115_N	0.684	0.88
298_I	321_T	0.682	0.88
183_V	215_V	0.682	0.88
336_T	385_H	0.682	0.88
290_F	299_S	0.679	0.87
62_D	88_S	0.679	0.87
136_V	139_A	0.678	0.87
21_L	237_Y	0.677	0.87
384_V	389_M	0.676	0.87
320_E	323_Q	0.675	0.87
339_C	371_L	0.674	0.87
81_I	84_V	0.673	0.87
349_I	377_H	0.672	0.87
83_S	137_V	0.671	0.87
336_T	339_C	0.671	0.87
199_V	249_H	0.670	0.87
220_A	223_I	0.669	0.87
176_I	183_V	0.667	0.86
183_V	205_I	0.667	0.86
281_G	284_N	0.667	0.86
360_V	370_I	0.662	0.86
322_A	326_L	0.662	0.86
361_S	364_S	0.659	0.86
283_Y	286_Q	0.659	0.86
368_I	395_A	0.659	0.86
80_T	101_T	0.657	0.86
292_A	329_M	0.657	0.86
183_V	243_T	0.656	0.86
101_T	150_T	0.655	0.85
190_V	269_K	0.655	0.85
341_K	383_L	0.652	0.85
271_V	301_D	0.652	0.85
235_S	238_S	0.651	0.85
289_V	326_L	0.649	0.85
8_F	13_V	0.649	0.85
108_L	148_G	0.646	0.85
271_V	313_T	0.646	0.85
293_M	319_T	0.644	0.85
100_L	105_A	0.644	0.85
195_K	199_V	0.642	0.84
14_K	237_Y	0.641	0.84
28_E	240_D	0.638	0.84
289_V	333_P	0.635	0.84
8_F	29_A	0.635	0.84
286_Q	369_P	0.635	0.84
167_A	227_A	0.634	0.84
354_G	369_P	0.633	0.84
222_E	226_Q	0.632	0.83
178_T	215_V	0.632	0.83
96_K	132_N	0.630	0.83
160_T	220_A	0.629	0.83
17_K	20_K	0.628	0.83
286_Q	373_S	0.628	0.83
97_A	135_A	0.628	0.83
290_F	310_I	0.627	0.83
185_T	195_K	0.627	0.83
284_N	299_S	0.627	0.83
58_L	63_Q	0.626	0.83
80_T	83_S	0.626	0.83
298_I	322_A	0.625	0.83
369_P	372_Q	0.625	0.83
273_Q	311_V	0.625	0.83
18_G	22_A	0.624	0.83
62_D	89_M	0.624	0.83
161_S	223_I	0.624	0.83
281_G	286_Q	0.623	0.83
5_V	171_A	0.622	0.82
387_A	391_P	0.622	0.82
186_A	397_H	0.621	0.82
288_E	329_M	0.621	0.82
122_K	127_F	0.620	0.82
13_V	43_M	0.620	0.82
182_G	196_P	0.618	0.82
277_P	308_S	0.617	0.82
220_A	224_A	0.615	0.82
290_F	303_F	0.615	0.82
284_N	310_I	0.614	0.82
395_A	399_V	0.614	0.82
71_Q	114_T	0.612	0.81
298_I	314_V	0.611	0.81
176_I	215_V	0.611	0.81
108_L	125_R	0.611	0.81
101_T	144_A	0.609	0.81
105_A	126_L	0.608	0.81
8_F	175_D	0.607	0.81
14_K	18_G	0.607	0.81
68_P	321_T	0.606	0.81
104_Q	129_V	0.606	0.81
289_V	329_M	0.606	0.81
124_E	127_F	0.605	0.81
363_L	382_V	0.602	0.80
14_K	43_M	0.602	0.80
107_F	121_M	0.601	0.80
77_C	80_T	0.600	0.80
370_I	374_A	0.599	0.80
391_P	395_A	0.598	0.80
372_Q	383_L	0.598	0.80
234_R	239_N	0.598	0.80
65_A	320_E	0.597	0.80
89_M	92_D	0.593	0.79
178_T	236_T	0.593	0.79
22_A	38_V	0.593	0.79
195_K	260_R	0.593	0.79
217_S	231_I	0.590	0.79
160_T	217_S	0.586	0.79
156_G	220_A	0.586	0.79
157_G	179_D	0.586	0.79
275_K	334_M	0.584	0.78
176_I	214_K	0.582	0.78
112_Q	115_N	0.582	0.78
296_A	325_I	0.581	0.78
12_S	178_T	0.580	0.78
32_E	358_K	0.579	0.78
355_V	380_I	0.579	0.78
267_H	342_V	0.579	0.78
185_T	194_A	0.578	0.78
129_V	132_N	0.578	0.78
304_N	374_A	0.578	0.78
358_K	362_A	0.578	0.78
290_F	301_D	0.578	0.78
41_S	52_T	0.577	0.77
45_R	53_D	0.577	0.77
354_G	357_S	0.576	0.77
392_A	395_A	0.576	0.77
279_K	307_P	0.576	0.77
107_F	110_N	0.576	0.77
217_S	223_I	0.576	0.77
8_F	239_N	0.575	0.77
12_S	176_I	0.574	0.77
85_V	104_Q	0.573	0.77
6_Q	25_H	0.572	0.77
300_V	303_F	0.572	0.77
72_D	113_H	0.571	0.77
4_I	29_A	0.570	0.77
104_Q	144_A	0.568	0.76
385_H	395_A	0.568	0.76
184_M	196_P	0.566	0.76
384_V	392_A	0.565	0.76
207_N	210_Y	0.565	0.76
12_S	215_V	0.564	0.76
20_K	24_G	0.562	0.76
267_H	340_A	0.561	0.76
263_T	266_A	0.561	0.76
207_N	360_V	0.560	0.75
366_K	392_A	0.559	0.75
113_H	149_D	0.558	0.75
87_T	137_V	0.556	0.75
320_E	327_M	0.556	0.75
22_A	236_T	0.555	0.75
224_A	227_A	0.553	0.74
40_V	82_S	0.553	0.74
327_M	331_Y	0.553	0.74
80_T	103_A	0.552	0.74
365_E	387_A	0.552	0.74
349_I	356_T	0.552	0.74
72_D	154_G	0.550	0.74
283_Y	369_P	0.549	0.74
289_V	312_Y	0.547	0.74
36_V	166_G	0.547	0.74
130_L	136_V	0.546	0.74
202_Y	230_P	0.546	0.74
6_Q	236_T	0.545	0.73
162_A	174_I	0.544	0.73
216_I	233_V	0.544	0.73
72_D	116_A	0.543	0.73
52_T	78_G	0.542	0.73
131_A	250_S	0.542	0.73
123_P	168_A	0.541	0.73
205_I	211_Q	0.541	0.73
270_D	386_E	0.541	0.73
279_K	309_E	0.541	0.73
302_F	313_T	0.541	0.73
356_T	373_S	0.541	0.73
120_E	123_P	0.538	0.72
260_R	263_T	0.538	0.72
108_L	145_T	0.538	0.72
337_R	391_P	0.537	0.72
3_I	127_F	0.537	0.72
59_L	66_I	0.533	0.72
73_L	150_T	0.533	0.72
357_S	361_S	0.533	0.72
116_A	143_G	0.533	0.72
284_N	307_P	0.532	0.72
206_C	305_I	0.531	0.72
273_Q	336_T	0.530	0.71
226_Q	260_R	0.529	0.71
365_E	398_E	0.528	0.71
163_A	224_A	0.528	0.71
139_A	150_T	0.528	0.71
51_A	58_L	0.527	0.71
72_D	151_T	0.527	0.71
83_S	101_T	0.526	0.71
111_D	146_E	0.525	0.71
13_V	22_A	0.525	0.71
119_I	122_K	0.524	0.71
246_T	249_H	0.523	0.70
360_V	369_P	0.521	0.70
279_K	283_Y	0.521	0.70
384_V	394_N	0.521	0.70
64_S	67_S	0.521	0.70
358_K	401_E	0.520	0.70
72_D	109_T	0.519	0.70
282_Q	285_V	0.519	0.70
293_M	322_A	0.518	0.70
141_F	158_S	0.518	0.70
111_D	119_I	0.516	0.69
262_I	265_I	0.516	0.69
175_D	235_S	0.515	0.69
178_T	189_R	0.514	0.69
274_F	298_I	0.513	0.69
178_T	264_G	0.510	0.68
230_P	244_L	0.509	0.68
4_I	175_D	0.509	0.68
275_K	309_E	0.508	0.68
113_H	151_T	0.508	0.68
356_T	377_H	0.507	0.68
61_G	64_S	0.507	0.68
164_A	219_R	0.503	0.67
306_T	309_E	0.503	0.67
282_Q	288_E	0.500	0.67
300_V	309_E	0.500	0.67

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2j0wA	2	0.9505	100	0.234	Contact Map
2cdqA	2	0.9653	100	0.246	Contact Map
3l76A	2	0.9629	100	0.25	Contact Map
3ab4A	7	0.9233	100	0.251	Contact Map
3c1mA	3	0.9653	100	0.264	Contact Map
3tviA	2	0.9604	100	0.274	Contact Map
4ab7A	3	0.8639	100	0.642	Contact Map
1ybdA	5	0.5347	100	0.707	Contact Map
2a1fA	5	0.5545	100	0.708	Contact Map
2j4jA	5	0.5124	100	0.709	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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