MURD - BACSU - GREMLIN Contacts

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MURD - UDP-N-acetylmuramoylalanine--D-glutamate ligase

UniProt:	Q03522	Sequences: MENDQFLQKQHFLILGLAKSGYAAASILHEKGIYVAVNDQKPFEENEPAQKLSEKGIEVVCGEHPVSLFDQHQITILIKNPGIPYENIMVQEAEKRGIPVWTEIELAYYLTSAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVASEVAYHADGDEWIVTELSSFQLMGTHAFRPEISLILNVFDAHLDYHHTRENYEKAKQKVYLHQTASDKAIVNQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMIMFNGEAILPLEEVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTTVNGRKFYNDSKATNILATSKALSAFDKPVILLAGGLDRGNGFDDLKPYMKHVKAVLTFGQTAPKLEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPACASWDQFKTFEERGDMFIDAVHMLK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	451 (391)
Sequences:	17885 (13464)
Seq/√Len:	680.9

ECOLI - MURD MURC MPL MURE MURF
BACSU - MURD MURC MURE MURF

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
186_L	291_V	3.495	1.00
244_F	287_A	2.945	1.00
289_I	302_V	2.667	1.00
399_K	410_A	2.662	1.00
137_A	308_S	2.645	1.00
35_V	49_A	2.628	1.00
114_K	183_E	2.565	1.00
298_S	301_A	2.551	1.00
184_I	291_V	2.520	1.00
410_A	414_L	2.516	1.00
186_L	287_A	2.459	1.00
401_V	410_A	2.434	1.00
318_Y	326_K	2.422	1.00
200_T	203_N	2.396	1.00
403_N	406_Q	2.388	1.00
92_E	95_K	2.379	1.00
134_M	288_A	2.322	1.00
92_E	96_R	2.304	1.00
205_E	232_R	2.243	1.00
137_A	305_V	2.231	1.00
134_M	292_V	2.194	1.00
220_K	294_T	2.168	1.00
340_S	344_S	2.150	1.00
199_H	203_N	2.130	1.00
273_E	307_T	2.112	1.00
410_A	413_A	2.075	1.00
375_A	414_L	2.025	1.00
274_V	285_I	1.992	1.00
375_A	399_K	1.987	1.00
106_L	110_L	1.981	1.00
183_E	219_D	1.959	1.00
137_A	304_K	1.920	1.00
138_D	301_A	1.911	1.00
358_D	386_L	1.895	1.00
415_S	421_I	1.890	1.00
349_P	419_D	1.889	1.00
140_Q	163_E	1.881	1.00
209_Q	236_A	1.880	1.00
256_V	259_S	1.876	1.00
52_L	78_I	1.868	1.00
117_G	182_P	1.856	1.00
133_E	308_S	1.844	1.00
246_V	279_A	1.839	1.00
116_I	295_A	1.821	1.00
131_I	288_A	1.817	1.00
117_G	169_L	1.787	1.00
293_K	299_N	1.784	1.00
205_E	229_T	1.756	1.00
212_Y	221_A	1.740	1.00
352_L	374_K	1.729	1.00
351_I	414_L	1.721	1.00
67_S	70_D	1.717	1.00
203_N	206_K	1.705	1.00
132_Y	144_I	1.704	1.00
389_L	392_E	1.689	1.00
318_Y	328_Y	1.680	1.00
90_V	94_E	1.676	1.00
191_F	337_L	1.662	1.00
66_V	70_D	1.659	1.00
383_A	386_L	1.655	1.00
118_I	131_I	1.653	1.00
131_I	291_V	1.652	1.00
220_K	242_V	1.619	1.00
131_I	292_V	1.612	1.00
384_P	388_K	1.605	1.00
225_Q	243_P	1.597	1.00
184_I	295_A	1.579	1.00
132_Y	136_K	1.578	1.00
138_D	297_A	1.571	1.00
285_I	306_L	1.564	1.00
377_L	414_L	1.545	1.00
292_V	302_V	1.545	1.00
220_K	240_E	1.533	1.00
185_S	211_V	1.532	1.00
37_V	42_P	1.529	1.00
321_T	326_K	1.524	1.00
215_Q	219_D	1.509	1.00
341_K	344_S	1.508	1.00
279_A	344_S	1.508	1.00
207_A	210_K	1.507	1.00
135_L	166_V	1.506	1.00
171_S	198_H	1.500	1.00
114_K	164_W	1.497	1.00
389_L	393_L	1.483	1.00
303_K	307_T	1.483	1.00
55_K	80_N	1.477	1.00
37_V	43_F	1.469	1.00
116_I	131_I	1.468	1.00
401_V	406_Q	1.465	1.00
327_F	412_F	1.443	1.00
225_Q	250_L	1.434	1.00
384_P	387_E	1.428	1.00
105_E	109_Y	1.426	1.00
135_L	295_A	1.423	1.00
164_W	295_A	1.417	1.00
301_A	304_K	1.413	1.00
349_P	375_A	1.406	1.00
91_Q	94_E	1.406	1.00
385_K	388_K	1.403	1.00
260_M	273_E	1.402	1.00
223_V	241_I	1.395	1.00
133_E	305_V	1.382	1.00
325_R	415_S	1.366	1.00
344_S	369_Y	1.365	1.00
115_F	180_F	1.364	1.00
292_V	297_A	1.362	1.00
107_A	110_L	1.357	1.00
223_V	243_P	1.355	1.00
378_T	387_E	1.350	1.00
275_V	310_T	1.341	1.00
324_G	417_E	1.341	1.00
222_I	294_T	1.339	1.00
184_I	294_T	1.338	1.00
223_V	230_V	1.332	1.00
176_G	179_A	1.328	1.00
126_T	281_N	1.327	1.00
127_T	188_L	1.326	1.00
130_L	276_L	1.324	1.00
192_D	362_G	1.319	1.00
261_I	285_I	1.312	1.00
367_K	370_M	1.305	1.00
59_V	63_E	1.304	1.00
240_E	294_T	1.299	1.00
406_Q	409_S	1.298	1.00
254_A	257_K	1.285	1.00
224_N	283_E	1.281	1.00
351_I	375_A	1.279	1.00
190_V	205_E	1.275	1.00
377_L	410_A	1.268	1.00
114_K	163_E	1.261	1.00
379_F	407_A	1.257	1.00
365_D	368_P	1.252	1.00
187_I	190_V	1.251	1.00
229_T	232_R	1.249	1.00
339_T	424_S	1.248	1.00
304_K	308_S	1.247	1.00
50_Q	53_S	1.245	1.00
202_E	206_K	1.237	1.00
130_L	309_F	1.236	1.00
349_P	416_N	1.233	1.00
250_L	253_G	1.228	1.00
185_S	215_Q	1.225	1.00
262_M	271_L	1.210	1.00
141_K	163_E	1.205	1.00
263_F	289_I	1.201	1.00
346_F	350_V	1.194	1.00
206_K	236_A	1.193	1.00
131_I	186_L	1.193	1.00
50_Q	54_E	1.189	1.00
281_N	284_N	1.189	1.00
118_I	128_T	1.187	1.00
316_L	346_F	1.186	1.00
175_M	178_H	1.185	1.00
253_G	256_V	1.177	1.00
184_I	222_I	1.171	1.00
242_V	294_T	1.168	1.00
209_Q	233_L	1.168	1.00
181_R	219_D	1.168	1.00
176_G	180_F	1.163	1.00
177_T	180_F	1.163	1.00
44_E	49_A	1.161	1.00
125_T	312_V	1.160	1.00
135_L	297_A	1.160	1.00
246_V	283_E	1.156	1.00
360_G	363_F	1.145	1.00
169_L	177_T	1.141	1.00
313_K	317_Q	1.140	1.00
384_P	400_R	1.134	1.00
304_K	307_T	1.132	1.00
279_A	283_E	1.124	1.00
187_I	212_Y	1.123	1.00
37_V	49_A	1.122	1.00
183_E	216_T	1.122	1.00
318_Y	321_T	1.120	1.00
409_S	413_A	1.119	1.00
242_V	290_A	1.119	1.00
353_L	379_F	1.115	1.00
375_A	397_H	1.105	1.00
134_M	302_V	1.101	1.00
361_N	365_D	1.098	1.00
226_D	283_E	1.095	1.00
206_K	210_K	1.092	1.00
357_L	381_Q	1.091	1.00
260_M	271_L	1.087	1.00
247_S	279_A	1.086	1.00
210_K	213_L	1.083	1.00
340_S	369_Y	1.082	1.00
317_Q	329_N	1.081	1.00
96_R	99_P	1.080	1.00
316_L	328_Y	1.080	1.00
99_P	103_E	1.079	1.00
192_D	195_L	1.073	1.00
377_L	407_A	1.071	1.00
232_R	235_E	1.070	1.00
94_E	100_V	1.066	1.00
130_L	285_I	1.064	1.00
222_I	290_A	1.064	1.00
201_R	229_T	1.063	1.00
105_E	108_Y	1.062	1.00
192_D	201_R	1.055	1.00
69_F	89_M	1.054	1.00
134_M	305_V	1.053	1.00
352_L	373_V	1.050	1.00
138_D	305_V	1.049	1.00
116_I	291_V	1.048	1.00
121_S	193_A	1.047	1.00
223_V	234_A	1.045	1.00
252_Q	256_V	1.041	1.00
158_H	161_G	1.040	1.00
225_Q	231_V	1.038	1.00
365_D	369_Y	1.036	1.00
348_K	420_V	1.036	1.00
269_L	272_E	1.027	1.00
416_N	419_D	1.026	1.00
264_N	267_A	1.025	1.00
213_L	236_A	1.022	1.00
300_E	304_K	1.018	1.00
133_E	136_K	1.016	1.00
94_E	97_G	1.016	1.00
80_N	97_G	1.016	1.00
365_D	370_M	1.014	1.00
135_L	164_W	1.012	1.00
406_Q	410_A	1.012	1.00
270_P	303_K	1.007	1.00
339_T	354_A	1.006	1.00
405_E	409_S	1.001	1.00
297_A	301_A	1.000	1.00
378_T	400_R	0.999	1.00
188_L	287_A	0.997	1.00
105_E	110_L	0.995	1.00
140_Q	164_W	0.994	1.00
210_K	214_H	0.994	1.00
122_N	337_L	0.994	1.00
174_L	207_A	0.991	1.00
187_I	233_L	0.990	1.00
115_F	165_I	0.990	1.00
349_P	374_K	0.989	1.00
351_I	377_L	0.984	1.00
50_Q	76_I	0.983	1.00
366_L	369_Y	0.981	1.00
373_V	376_V	0.975	1.00
351_I	419_D	0.973	1.00
65_P	77_L	0.971	1.00
253_G	259_S	0.967	1.00
40_Q	43_F	0.965	1.00
184_I	220_K	0.959	1.00
387_E	400_R	0.959	1.00
255_Y	258_D	0.959	1.00
215_Q	221_A	0.953	1.00
252_Q	259_S	0.953	1.00
205_E	209_Q	0.953	1.00
203_N	207_A	0.952	1.00
340_S	372_H	0.938	1.00
122_N	334_T	0.938	1.00
226_D	245_S	0.935	1.00
174_L	203_N	0.930	1.00
321_T	325_R	0.930	1.00
91_Q	95_K	0.927	1.00
342_A	422_L	0.927	1.00
69_F	77_L	0.925	1.00
366_L	370_M	0.924	1.00
334_T	339_T	0.922	1.00
399_K	414_L	0.919	1.00
293_K	302_V	0.914	1.00
227_D	283_E	0.909	1.00
402_D	406_Q	0.901	1.00
264_N	269_L	0.897	1.00
172_F	197_Y	0.896	1.00
175_M	180_F	0.896	1.00
328_Y	346_F	0.891	1.00
363_F	366_L	0.890	1.00
132_Y	142_A	0.889	1.00
325_R	418_G	0.887	1.00
175_M	179_A	0.884	1.00
245_S	283_E	0.881	1.00
228_E	232_R	0.880	1.00
114_K	295_A	0.876	1.00
352_L	424_S	0.875	1.00
209_Q	213_L	0.873	1.00
316_L	345_A	0.872	1.00
291_V	295_A	0.872	1.00
362_G	365_D	0.869	1.00
261_I	282_L	0.869	1.00
90_V	93_A	0.868	1.00
119_T	208_K	0.866	1.00
202_E	229_T	0.864	1.00
105_E	179_A	0.863	1.00
314_H	329_N	0.862	1.00
231_V	243_P	0.861	1.00
43_F	49_A	0.858	1.00
117_G	211_V	0.856	1.00
59_V	64_H	0.855	1.00
101_W	104_I	0.854	1.00
254_A	259_S	0.853	1.00
289_I	293_K	0.852	1.00
254_A	286_L	0.851	1.00
202_E	205_E	0.849	1.00
133_E	309_F	0.847	1.00
250_L	259_S	0.847	1.00
337_L	341_K	0.846	1.00
87_N	90_V	0.844	1.00
224_N	227_D	0.842	1.00
368_P	372_H	0.840	1.00
137_A	301_A	0.840	1.00
299_N	303_K	0.840	1.00
344_S	372_H	0.839	1.00
159_A	162_D	0.838	1.00
68_L	74_I	0.832	1.00
262_M	268_I	0.832	1.00
201_R	205_E	0.828	1.00
411_A	415_S	0.827	1.00
221_A	237_G	0.825	1.00
383_A	400_R	0.821	1.00
132_Y	143_L	0.820	1.00
138_D	298_S	0.817	1.00
50_Q	78_I	0.817	1.00
265_G	269_L	0.810	1.00
360_G	364_D	0.808	1.00
85_Y	94_E	0.807	1.00
231_V	235_E	0.805	1.00
55_K	81_P	0.799	1.00
181_R	216_T	0.798	1.00
133_E	137_A	0.797	1.00
321_T	324_G	0.797	1.00
127_T	287_A	0.796	1.00
62_G	65_P	0.794	1.00
42_P	53_S	0.791	1.00
252_Q	258_D	0.790	1.00
343_L	352_L	0.790	1.00
36_A	74_I	0.785	1.00
408_V	412_F	0.783	1.00
383_A	387_E	0.783	1.00
387_E	391_N	0.782	1.00
252_Q	255_Y	0.778	1.00
191_F	201_R	0.777	1.00
289_I	299_N	0.773	1.00
326_K	420_V	0.771	1.00
401_V	407_A	0.766	1.00
221_A	239_A	0.766	1.00
363_F	367_K	0.765	1.00
234_A	243_P	0.765	1.00
363_F	370_M	0.764	1.00
377_L	401_V	0.763	1.00
158_H	162_D	0.761	1.00
64_H	67_S	0.759	1.00
246_V	286_L	0.759	1.00
222_I	291_V	0.756	1.00
391_N	394_G	0.755	1.00
328_Y	420_V	0.755	1.00
375_A	379_F	0.754	1.00
49_A	53_S	0.750	1.00
250_L	258_D	0.748	1.00
174_L	206_K	0.747	1.00
348_K	419_D	0.747	1.00
374_K	380_G	0.745	1.00
373_V	379_F	0.744	1.00
282_L	286_L	0.744	1.00
171_S	207_A	0.741	1.00
297_A	302_V	0.739	1.00
324_G	418_G	0.738	1.00
251_E	254_A	0.738	1.00
250_L	254_A	0.738	1.00
198_H	207_A	0.737	1.00
169_L	182_P	0.736	1.00
206_K	209_Q	0.735	1.00
356_G	382_T	0.733	1.00
355_G	425_P	0.729	1.00
138_D	292_V	0.728	1.00
225_Q	230_V	0.727	1.00
110_L	181_R	0.726	1.00
267_A	270_P	0.724	1.00
302_V	305_V	0.724	1.00
34_Y	48_P	0.723	1.00
127_T	288_A	0.722	1.00
286_L	290_A	0.722	1.00
224_N	244_F	0.721	1.00
269_L	303_K	0.721	1.00
270_P	299_N	0.719	1.00
381_Q	402_D	0.716	1.00
174_L	197_Y	0.714	1.00
106_L	109_Y	0.713	1.00
175_M	207_A	0.707	1.00
231_V	234_A	0.706	1.00
192_D	337_L	0.705	1.00
266_E	269_L	0.703	1.00
358_D	385_K	0.702	1.00
261_I	272_E	0.698	1.00
188_L	244_F	0.698	1.00
115_F	167_T	0.697	1.00
129_T	312_V	0.696	1.00
280_H	341_K	0.695	1.00
222_I	242_V	0.694	1.00
61_C	64_H	0.691	1.00
226_D	246_V	0.690	1.00
88_I	92_E	0.689	1.00
202_E	232_R	0.688	1.00
232_R	236_A	0.687	1.00
374_K	379_F	0.687	1.00
70_D	73_Q	0.685	1.00
378_T	398_V	0.685	1.00
129_T	148_I	0.681	1.00
258_D	262_M	0.681	1.00
79_K	90_V	0.680	1.00
390_G	393_L	0.680	1.00
276_L	309_F	0.680	1.00
190_V	201_R	0.679	1.00
364_D	389_L	0.678	1.00
129_T	133_E	0.677	1.00
323_N	417_E	0.676	1.00
272_E	303_K	0.675	1.00
82_G	93_A	0.673	1.00
53_S	61_C	0.672	1.00
187_I	205_E	0.672	1.00
96_R	100_V	0.672	1.00
265_G	270_P	0.666	1.00
270_P	273_E	0.666	1.00
356_G	383_A	0.664	1.00
326_K	348_K	0.664	1.00
250_L	257_K	0.663	1.00
353_L	421_I	0.663	1.00
404_V	408_V	0.663	1.00
363_F	369_Y	0.660	1.00
289_I	303_K	0.657	1.00
101_W	109_Y	0.657	1.00
252_Q	257_K	0.656	1.00
205_E	233_L	0.656	1.00
351_I	411_A	0.655	1.00
39_D	42_P	0.653	1.00
125_T	147_N	0.653	1.00
279_A	282_L	0.653	1.00
97_G	104_I	0.651	1.00
77_L	89_M	0.650	1.00
353_L	423_L	0.649	1.00
255_Y	259_S	0.649	1.00
340_S	365_D	0.647	1.00
327_F	421_I	0.646	1.00
116_I	135_L	0.644	1.00
52_L	97_G	0.644	1.00
99_P	109_Y	0.643	1.00
103_E	106_L	0.641	1.00
40_Q	64_H	0.641	1.00
132_Y	166_V	0.640	1.00
407_A	411_A	0.638	1.00
320_T	326_K	0.636	1.00
118_I	186_L	0.636	1.00
96_R	101_W	0.635	1.00
42_P	50_Q	0.632	1.00
201_R	204_Y	0.629	1.00
351_I	415_S	0.627	1.00
142_A	162_D	0.627	1.00
93_A	96_R	0.626	1.00
264_N	293_K	0.625	1.00
253_G	257_K	0.624	1.00
390_G	395_I	0.624	1.00
276_L	281_N	0.623	1.00
81_P	84_P	0.623	1.00
113_A	165_I	0.622	1.00
352_L	376_V	0.622	1.00
183_E	218_S	0.620	1.00
51_K	55_K	0.619	1.00
69_F	73_Q	0.619	1.00
97_G	100_V	0.618	1.00
97_G	101_W	0.618	1.00
173_Q	197_Y	0.616	1.00
122_N	191_F	0.616	1.00
353_L	407_A	0.615	1.00
134_M	138_D	0.615	1.00
254_A	258_D	0.614	1.00
35_V	44_E	0.613	1.00
346_F	422_L	0.613	1.00
102_T	175_M	0.613	1.00
225_Q	245_S	0.612	1.00
181_R	214_H	0.612	1.00
342_A	424_S	0.611	1.00
256_V	262_M	0.610	1.00
62_G	80_N	0.609	1.00
251_E	257_K	0.609	1.00
136_K	141_K	0.606	1.00
195_L	199_H	0.604	1.00
392_E	395_I	0.603	1.00
130_L	288_A	0.602	1.00
353_L	411_A	0.602	1.00
379_F	404_V	0.601	1.00
230_V	234_A	0.600	1.00
389_L	394_G	0.600	1.00
364_D	368_P	0.600	1.00
129_T	149_G	0.600	1.00
53_S	65_P	0.599	1.00
322_V	325_R	0.598	1.00
98_I	102_T	0.595	1.00
96_R	104_I	0.593	1.00
131_I	166_V	0.593	1.00
344_S	371_K	0.593	1.00
251_E	259_S	0.590	1.00
49_A	61_C	0.587	1.00
262_M	270_P	0.586	1.00
226_D	247_S	0.585	1.00
289_I	306_L	0.585	1.00
266_E	293_K	0.585	1.00
145_A	157_Y	0.583	1.00
134_M	297_A	0.582	1.00
135_L	292_V	0.580	1.00
360_G	385_K	0.580	1.00
364_D	392_E	0.578	1.00
63_E	67_S	0.577	1.00
374_K	416_N	0.577	1.00
122_N	338_A	0.577	1.00
343_L	373_V	0.576	1.00
142_A	145_A	0.575	1.00
375_A	380_G	0.574	1.00
43_F	74_I	0.573	1.00
367_K	389_L	0.573	1.00
230_V	233_L	0.572	1.00
316_L	342_A	0.572	1.00
65_P	69_F	0.571	1.00
102_T	179_A	0.570	1.00
300_E	303_K	0.570	1.00
101_W	106_L	0.569	1.00
38_N	59_V	0.569	1.00
128_T	166_V	0.567	1.00
260_M	270_P	0.567	1.00
106_L	181_R	0.566	1.00
128_T	144_I	0.565	1.00
388_K	392_E	0.563	1.00
101_W	105_E	0.563	1.00
111_T	114_K	0.562	1.00
388_K	391_N	0.562	1.00
89_M	92_E	0.561	1.00
157_Y	161_G	0.559	1.00
350_V	374_K	0.556	1.00
48_P	51_K	0.556	1.00
172_F	196_D	0.555	1.00
174_L	198_H	0.554	1.00
76_I	101_W	0.554	1.00
278_G	281_N	0.553	1.00
155_V	158_H	0.553	1.00
343_L	371_K	0.551	1.00
141_K	162_D	0.550	1.00
374_K	419_D	0.549	1.00
245_S	249_T	0.548	1.00
327_F	423_L	0.547	1.00
88_I	91_Q	0.547	1.00
34_Y	58_E	0.543	1.00
174_L	210_K	0.543	1.00
333_A	339_T	0.543	1.00
287_A	291_V	0.541	1.00
408_V	423_L	0.539	1.00
77_L	93_A	0.538	1.00
274_V	306_L	0.537	1.00
290_A	294_T	0.537	1.00
195_L	200_T	0.536	1.00
116_I	164_W	0.534	1.00
387_E	398_V	0.534	1.00
102_T	176_G	0.534	1.00
382_T	385_K	0.533	1.00
63_E	81_P	0.533	1.00
237_G	241_I	0.532	1.00
372_H	375_A	0.531	1.00
111_T	181_R	0.530	1.00
119_T	187_I	0.529	1.00
333_A	338_A	0.528	1.00
251_E	255_Y	0.526	1.00
129_T	313_K	0.526	1.00
291_V	294_T	0.526	1.00
126_T	130_L	0.524	1.00
185_S	218_S	0.523	1.00
195_L	201_R	0.522	1.00
363_F	427_C	0.521	0.99
347_D	420_V	0.519	0.99
346_F	420_V	0.518	0.99
299_N	302_V	0.517	0.99
234_A	241_I	0.517	0.99
409_S	412_F	0.516	0.99
265_G	271_L	0.515	0.99
118_I	127_T	0.513	0.99
121_S	191_F	0.512	0.99
323_N	412_F	0.510	0.99
225_Q	247_S	0.507	0.99
301_A	305_V	0.506	0.99
269_L	299_N	0.505	0.99
142_A	166_V	0.505	0.99
68_L	73_Q	0.505	0.99
100_V	104_I	0.501	0.99
348_K	418_G	0.501	0.99
145_A	167_T	0.501	0.99
96_R	102_T	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3lk7A	1	0.9867	100	0.18	Contact Map
2x5oA	1	0.9557	100	0.193	Contact Map
4bucA	1	0.9202	100	0.252	Contact Map
1p3dA	1	0.9534	100	0.319	Contact Map
3hn7A	1	0.9468	100	0.321	Contact Map
4hv4A	1	0.9446	100	0.332	Contact Map
4c12A	2	0.9667	100	0.336	Contact Map
3zl8A	1	0.8936	100	0.339	Contact Map
4qdiA	1	0.9246	100	0.345	Contact Map
4cvkA	1	0.9047	100	0.353	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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