YSXA - BACSU - GREMLIN Contacts

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YSXA - UPF0758 protein YsxA

UniProt:	Q02170	Sequences: MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPGIGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	231 (220)
Sequences:	3118 (2313)
Seq/√Len:	155.9

ECOLI - YICR YFJY YKFG YEES
BACSU - YSXA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
48_E	56_R	5.513	1.00
61_F	70_A	3.187	1.00
147_R	167_E	3.045	1.00
223_V	228_K	3.000	1.00
138_N	142_Q	2.967	1.00
165_F	204_G	2.768	1.00
201_F	211_L	2.758	1.00
120_V	179_V	2.745	1.00
178_C	211_L	2.729	1.00
194_I	225_L	2.632	1.00
145_H	171_R	2.415	1.00
135_L	143_V	2.265	1.00
110_I	143_V	2.256	1.00
191_R	195_E	2.169	1.00
52_D	55_N	2.134	1.00
71_S	74_E	2.108	1.00
139_T	155_N	2.078	1.00
111_R	115_D	2.061	1.00
129_Q	151_I	2.047	1.00
187_P	221_K	2.013	1.00
178_C	200_L	2.008	1.00
154_L	174_A	1.966	1.00
49_S	52_D	1.959	1.00
133_V	148_T	1.920	1.00
198_R	202_E	1.890	1.00
114_E	118_N	1.885	1.00
148_T	151_I	1.836	1.00
132_F	159_V	1.803	1.00
127_L	131_H	1.792	1.00
34_H	55_N	1.763	1.00
124_M	127_L	1.759	1.00
116_G	177_I	1.745	1.00
131_H	151_I	1.720	1.00
63_G	66_L	1.711	1.00
123_D	146_K	1.674	1.00
202_E	205_N	1.671	1.00
164_V	200_L	1.666	1.00
129_Q	150_F	1.661	1.00
141_N	175_S	1.660	1.00
131_H	148_T	1.635	1.00
194_I	230_Y	1.612	1.00
136_Y	167_E	1.602	1.00
201_F	205_N	1.591	1.00
150_F	157_S	1.588	1.00
168_A	209_I	1.586	1.00
117_A	121_M	1.582	1.00
113_P	227_E	1.571	1.00
92_A	96_G	1.560	1.00
166_K	172_S	1.555	1.00
81_I	86_A	1.524	1.00
133_V	146_K	1.495	1.00
23_L	28_A	1.480	1.00
47_H	79_P	1.478	1.00
136_Y	171_R	1.469	1.00
140_K	186_D	1.455	1.00
159_V	196_V	1.401	1.00
132_F	211_L	1.399	1.00
20_R	84_V	1.393	1.00
76_S	83_M	1.392	1.00
72_V	76_S	1.374	1.00
75_L	86_A	1.368	1.00
167_E	171_R	1.357	1.00
23_L	31_L	1.355	1.00
23_L	87_I	1.353	1.00
165_F	207_I	1.351	1.00
167_E	170_K	1.346	1.00
38_A	51_L	1.342	1.00
136_Y	147_R	1.332	1.00
225_L	230_Y	1.321	1.00
26_V	30_N	1.319	1.00
42_R	88_Q	1.304	1.00
40_L	88_Q	1.279	1.00
50_V	54_S	1.260	1.00
22_R	35_E	1.255	1.00
132_F	157_S	1.254	1.00
76_S	86_A	1.253	1.00
23_L	39_I	1.249	1.00
64_L	95_L	1.229	1.00
124_M	133_V	1.229	1.00
197_T	214_H	1.224	1.00
60_S	77_S	1.216	1.00
125_R	219_D	1.212	1.00
15_M	18_K	1.208	1.00
60_S	78_I	1.202	1.00
121_M	125_R	1.198	1.00
137_L	175_S	1.184	1.00
153_S	158_I	1.177	1.00
110_I	116_G	1.172	1.00
223_V	230_Y	1.137	1.00
40_L	92_A	1.124	1.00
187_P	223_V	1.113	1.00
34_H	51_L	1.109	1.00
191_R	194_I	1.106	0.99
22_R	26_V	1.105	0.99
198_R	201_F	1.104	0.99
204_G	207_I	1.103	0.99
215_L	222_F	1.103	0.99
24_L	83_M	1.101	0.99
203_C	206_L	1.098	0.99
135_L	146_K	1.083	0.99
41_L	50_V	1.071	0.99
153_S	160_H	1.062	0.99
44_G	85_K	1.055	0.99
203_C	207_I	1.054	0.99
141_N	212_L	1.043	0.99
43_T	88_Q	1.042	0.99
168_A	176_F	1.038	0.99
110_I	115_D	1.035	0.99
136_Y	168_A	1.028	0.99
187_P	218_G	1.028	0.99
116_G	215_L	1.026	0.99
157_S	196_V	1.023	0.99
188_T	228_K	1.022	0.99
125_R	218_G	1.016	0.99
117_A	222_F	1.006	0.99
57_L	78_I	1.002	0.99
114_E	227_E	0.996	0.99
117_A	227_E	0.994	0.99
216_V	223_V	0.980	0.99
94_E	98_R	0.976	0.99
24_L	87_I	0.974	0.99
204_G	211_L	0.971	0.99
83_M	87_I	0.968	0.99
218_G	221_K	0.963	0.99
153_S	163_E	0.958	0.99
72_V	90_L	0.955	0.99
112_S	115_D	0.952	0.98
119_L	146_K	0.944	0.98
72_V	83_M	0.942	0.98
166_K	170_K	0.940	0.98
150_F	158_I	0.938	0.98
154_L	162_R	0.937	0.98
72_V	86_A	0.936	0.98
127_L	148_T	0.936	0.98
43_T	85_K	0.936	0.98
48_E	52_D	0.925	0.98
74_E	170_K	0.909	0.98
159_V	164_V	0.904	0.98
29_E	97_S	0.898	0.98
134_C	178_C	0.897	0.98
145_H	167_E	0.892	0.98
121_M	220_K	0.889	0.98
132_F	196_V	0.889	0.98
129_Q	147_R	0.886	0.98
81_I	85_K	0.883	0.98
225_L	228_K	0.882	0.98
75_L	89_I	0.882	0.98
128_T	166_K	0.874	0.97
121_M	219_D	0.873	0.97
120_V	135_L	0.866	0.97
110_I	119_L	0.863	0.97
18_K	50_V	0.862	0.97
147_R	171_R	0.847	0.97
213_D	224_S	0.846	0.97
139_T	174_A	0.844	0.97
51_L	55_N	0.842	0.97
217_I	222_F	0.840	0.97
108_F	143_V	0.836	0.97
33_N	102_L	0.823	0.96
19_P	44_G	0.819	0.96
163_E	166_K	0.819	0.96
127_L	151_I	0.817	0.96
84_V	87_I	0.816	0.96
60_S	74_E	0.813	0.96
101_K	123_D	0.810	0.96
69_E	99_I	0.807	0.96
72_V	87_I	0.805	0.96
120_V	146_K	0.804	0.96
132_F	178_C	0.803	0.96
19_P	42_R	0.794	0.95
65_R	102_L	0.791	0.95
123_D	133_V	0.790	0.95
175_S	212_L	0.787	0.95
117_A	215_L	0.784	0.95
136_Y	149_V	0.782	0.95
222_F	227_E	0.782	0.95
187_P	216_V	0.781	0.95
22_R	28_A	0.781	0.95
93_V	96_G	0.768	0.94
74_E	77_S	0.768	0.94
39_I	43_T	0.764	0.94
116_G	179_V	0.752	0.94
19_P	39_I	0.751	0.94
129_Q	163_E	0.743	0.93
68_K	93_V	0.741	0.93
109_V	142_Q	0.741	0.93
115_D	143_V	0.734	0.93
37_L	162_R	0.733	0.93
86_A	90_L	0.731	0.93
44_G	88_Q	0.728	0.93
195_E	198_R	0.724	0.93
19_P	38_A	0.723	0.93
94_E	97_S	0.716	0.92
14_P	17_E	0.709	0.92
176_F	204_G	0.705	0.92
192_E	195_E	0.702	0.91
202_E	206_L	0.699	0.91
108_F	115_D	0.698	0.91
33_N	98_R	0.692	0.91
199_R	208_G	0.691	0.91
107_H	142_Q	0.690	0.91
134_C	149_V	0.690	0.91
136_Y	173_A	0.687	0.91
152_G	181_N	0.686	0.90
194_I	198_R	0.685	0.90
165_F	211_L	0.683	0.90
100_H	122_E	0.681	0.90
88_Q	92_A	0.676	0.90
113_P	117_A	0.675	0.90
38_A	42_R	0.671	0.89
69_E	128_T	0.671	0.89
23_L	90_L	0.671	0.89
182_H	193_D	0.671	0.89
41_L	53_L	0.664	0.89
155_N	174_A	0.659	0.89
23_L	94_E	0.658	0.89
216_V	230_Y	0.657	0.88
194_I	223_V	0.653	0.88
216_V	225_L	0.651	0.88
123_D	148_T	0.649	0.88
134_C	176_F	0.648	0.88
182_H	190_S	0.646	0.88
164_V	178_C	0.646	0.88
189_P	223_V	0.640	0.87
56_R	60_S	0.639	0.87
164_V	176_F	0.636	0.87
154_L	172_S	0.636	0.87
13_F	51_L	0.636	0.87
120_V	215_L	0.635	0.87
149_V	164_V	0.632	0.86
144_I	173_A	0.629	0.86
34_H	50_V	0.629	0.86
118_N	121_M	0.629	0.86
127_L	133_V	0.627	0.86
14_P	18_K	0.624	0.86
130_E	183_P	0.620	0.85
160_H	163_E	0.620	0.85
60_S	79_P	0.617	0.85
31_L	35_E	0.616	0.85
28_A	39_I	0.614	0.85
99_I	126_F	0.614	0.85
124_M	217_I	0.611	0.85
61_F	78_I	0.602	0.84
66_L	102_L	0.601	0.84
169_F	203_C	0.601	0.84
137_L	177_I	0.601	0.84
45_T	79_P	0.600	0.84
45_T	48_E	0.600	0.84
180_H	190_S	0.599	0.83
216_V	228_K	0.598	0.83
13_F	55_N	0.595	0.83
75_L	81_I	0.594	0.83
116_G	135_L	0.594	0.83
140_K	184_S	0.592	0.83
57_L	81_I	0.589	0.82
49_S	55_N	0.589	0.82
22_R	32_A	0.577	0.81
210_E	226_K	0.577	0.81
130_E	182_H	0.575	0.81
48_E	53_L	0.573	0.81
122_E	125_R	0.572	0.81
39_I	50_V	0.572	0.81
38_A	85_K	0.572	0.81
68_K	99_I	0.571	0.80
62_D	66_L	0.571	0.80
130_E	180_H	0.569	0.80
152_G	182_H	0.567	0.80
162_R	174_A	0.566	0.80
195_E	199_R	0.565	0.80
204_G	209_I	0.564	0.80
170_K	207_I	0.564	0.80
176_F	211_L	0.563	0.80
38_A	44_G	0.563	0.80
29_E	94_E	0.562	0.79
53_L	56_R	0.560	0.79
139_T	154_L	0.559	0.79
130_E	152_G	0.559	0.79
48_E	79_P	0.558	0.79
18_K	49_S	0.555	0.79
21_E	25_K	0.554	0.78
15_M	25_K	0.553	0.78
221_K	228_K	0.553	0.78
111_R	143_V	0.553	0.78
132_F	161_P	0.550	0.78
104_N	118_N	0.550	0.78
190_S	193_D	0.550	0.78
136_Y	145_H	0.549	0.78
195_E	202_E	0.548	0.78
66_L	69_E	0.547	0.78
36_L	95_L	0.546	0.77
152_G	193_D	0.543	0.77
136_Y	176_F	0.542	0.77
19_P	85_K	0.540	0.77
190_S	197_T	0.539	0.77
180_H	183_P	0.537	0.76
175_S	210_E	0.537	0.76
20_R	50_V	0.537	0.76
96_G	99_I	0.537	0.76
28_A	36_L	0.534	0.76
69_E	93_V	0.533	0.76
199_R	203_C	0.533	0.76
163_E	184_S	0.533	0.76
154_L	160_H	0.531	0.75
130_E	190_S	0.531	0.75
181_N	193_D	0.530	0.75
24_L	72_V	0.530	0.75
20_R	23_L	0.527	0.75
154_L	161_P	0.527	0.75
93_V	99_I	0.526	0.75
185_G	197_T	0.522	0.74
28_A	31_L	0.522	0.74
132_F	164_V	0.519	0.74
137_L	141_N	0.516	0.73
57_L	67_L	0.516	0.73
166_K	169_F	0.513	0.73
152_G	180_H	0.510	0.73
57_L	75_L	0.510	0.73
36_L	44_G	0.509	0.72
113_P	226_K	0.508	0.72
205_N	210_E	0.508	0.72
73_E	171_R	0.508	0.72
18_K	51_L	0.506	0.72
199_R	202_E	0.505	0.72
143_V	158_I	0.504	0.72
19_P	50_V	0.504	0.72
205_N	208_G	0.503	0.72
39_I	91_A	0.503	0.72
139_T	210_E	0.502	0.71
108_F	142_Q	0.501	0.71
199_R	205_N	0.500	0.71

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2qlcA	1	0.5455	100	0.429	Contact Map
1x2iA	2	0.2944	98.6	0.854	Contact Map
3c1yA	5	0.4199	98.1	0.875	Contact Map
4bxoA	1	0.4069	97	0.899	Contact Map
1dgsA	1	0.4935	96.9	0.899	Contact Map
2owoA	1	0.4935	96.6	0.903	Contact Map
2a1jB	2	0.3377	96.5	0.905	Contact Map
1z00A	1	0.3636	96.4	0.906	Contact Map
1kftA	1	0.2424	96.3	0.906	Contact Map
2bgwA	2	0.3983	96.1	0.908	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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