GREMLIN Database
YDFG - Uncharacterized protein YdfG
UniProt: P96684 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 147 (139)
Sequences: 3133 (2008)
Seq/√Len: 170.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
60_R66_E3.6561.00
42_V92_S3.4261.00
64_E68_R3.2171.00
66_E70_Y2.6591.00
111_V120_Y2.5481.00
116_D119_Q2.4391.00
90_E110_R2.4371.00
112_R117_E2.2891.00
84_E119_Q2.2381.00
128_N132_S2.2191.00
91_L124_V2.0371.00
95_I139_A1.9601.00
38_I123_L1.9301.00
35_R126_I1.9041.00
94_H107_L1.8781.00
60_R70_Y1.8761.00
110_R113_E1.8731.00
96_T131_N1.8671.00
36_E62_M1.7601.00
118_E122_D1.7491.00
137_S142_N1.7431.00
97_L100_S1.7321.00
71_C80_F1.7131.00
40_I52_I1.6691.00
53_D67_Q1.6681.00
18_M132_S1.6241.00
14_G125_L1.6151.00
44_Q93_E1.5891.00
52_I74_A1.5571.00
22_E39_K1.5561.00
43_S134_N1.5531.00
21_M129_Q1.5331.00
68_R85_E1.5311.00
53_D57_S1.4571.00
40_I56_T1.4191.00
42_V130_I1.3971.00
71_C78_C1.3811.00
34_T115_Y1.3731.00
112_R120_Y1.3701.00
94_H104_P1.3651.00
84_E114_H1.3591.00
34_T88_A1.3441.00
104_P107_L1.3301.00
48_C51_C1.3251.00
71_C81_Y1.3061.00
14_G24_Y1.3051.00
57_S61_K1.2981.00
29_S122_D1.2781.00
33_T68_R1.2731.00
6_S9_E1.2571.00
65_T68_R1.2491.00
84_E115_Y1.2231.00
40_I69_I1.2111.00
31_N84_E1.2021.00
87_A107_L1.1991.00
30_I35_R1.1971.00
36_E58_D1.1781.00
105_D109_H1.1611.00
115_Y123_L1.1511.00
95_I124_V1.1491.00
112_R116_D1.1451.00
105_D141_G1.1371.00
11_A122_D1.1301.00
8_Y15_M1.1061.00
17_I20_D1.0911.00
76_N90_E1.0761.00
41_R93_E1.0440.99
38_I88_A1.0320.99
36_E39_K1.0310.99
124_V140_M1.0270.99
110_R114_H1.0220.99
26_K32_R1.0150.99
19_M133_W1.0140.99
41_R44_Q0.9920.99
98_I138_I0.9910.99
107_L110_R0.9760.99
90_E107_L0.9680.99
91_L139_A0.9640.99
90_E94_H0.9570.99
83_P113_E0.9350.99
56_T70_Y0.9240.99
83_P114_H0.9060.98
130_I133_W0.8920.98
105_D108_Y0.8840.98
22_E133_W0.8760.98
101_K141_G0.8670.98
71_C79_D0.8660.98
107_L111_V0.8650.98
46_N134_N0.8650.98
58_D61_K0.8570.98
109_H113_E0.8570.98
32_R62_M0.8560.98
79_D86_K0.8520.98
29_S118_E0.8350.97
10_I121_V0.8290.97
87_A90_E0.8280.97
129_Q133_W0.8150.97
91_L127_I0.8140.97
7_Y142_N0.8140.97
121_V140_M0.8110.97
91_L103_V0.8020.97
59_A69_I0.7950.96
103_V139_A0.7930.96
131_N135_R0.7910.96
55_H130_I0.7890.96
49_A74_A0.7890.96
11_A121_V0.7880.96
15_M19_M0.7840.96
54_M133_W0.7800.96
74_A77_E0.7580.95
88_A115_Y0.7570.95
18_M22_E0.7550.95
13_E27_Q0.7540.95
132_S137_S0.7520.95
39_K130_I0.7450.95
18_M133_W0.7440.95
109_H112_R0.7410.95
67_Q80_F0.7400.95
33_T64_E0.7360.95
92_S127_I0.7320.94
16_K20_D0.7280.94
91_L111_V0.7260.94
83_P110_R0.7240.94
16_K19_M0.7230.94
87_A114_H0.7210.94
59_A64_E0.7200.94
116_D120_Y0.7170.94
40_I59_A0.7160.94
45_M93_E0.7160.94
103_V107_L0.7130.94
24_Y28_S0.7110.94
91_L140_M0.7070.93
52_I71_C0.7040.93
13_E16_K0.6970.93
40_I72_L0.6940.93
13_E118_E0.6930.93
36_E55_H0.6790.92
76_N93_E0.6780.92
43_S130_I0.6760.92
50_F54_M0.6730.92
99_P102_R0.6730.92
35_R39_K0.6710.91
31_N34_T0.6680.91
15_M137_S0.6650.91
33_T59_A0.6630.91
34_T119_Q0.6620.91
83_P86_K0.6570.91
20_D24_Y0.6520.90
41_R75_W0.6520.90
20_D23_K0.6510.90
72_L81_Y0.6470.90
98_I102_R0.6440.90
88_A123_L0.6350.89
70_Y73_H0.6340.89
55_H133_W0.6290.89
50_F138_I0.6270.88
97_L102_R0.6250.88
10_I118_E0.6230.88
101_K107_L0.6220.88
46_N96_T0.6150.87
75_W93_E0.6120.87
5_V108_Y0.6120.87
5_V120_Y0.6110.87
129_Q132_S0.6100.87
22_E130_I0.5980.86
43_S51_C0.5970.86
34_T38_I0.5900.85
103_V111_V0.5800.84
57_S67_Q0.5750.84
44_Q72_L0.5740.84
7_Y15_M0.5730.84
44_Q75_W0.5680.83
23_K26_K0.5660.83
6_S142_N0.5630.82
52_I70_Y0.5620.82
67_Q79_D0.5610.82
71_C74_A0.5570.82
7_Y11_A0.5560.82
35_R122_D0.5550.82
22_E129_Q0.5500.81
28_S122_D0.5440.80
19_M22_E0.5420.80
103_V108_Y0.5410.80
39_K126_I0.5390.80
53_D80_F0.5370.79
106_E110_R0.5340.79
125_L128_N0.5330.79
45_M97_L0.5290.78
7_Y121_V0.5270.78
11_A24_Y0.5210.77
54_M58_D0.5210.77
11_A132_S0.5200.77
68_R82_S0.5190.77
50_F133_W0.5190.77
87_A110_R0.5150.77
48_C134_N0.5140.76
25_T122_D0.5120.76
39_K133_W0.5090.76
59_A63_G0.5090.76
33_T85_E0.5060.75
140_M143_R0.5040.75
43_S46_N0.5030.75
47_G76_N0.5020.75
106_E113_E0.5020.75
75_W86_K0.5010.75
43_S48_C0.5010.75
18_M21_M0.5010.75
15_M50_F0.5000.74
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2o4dA 3 0.9796 100 0.261 Contact Map
2gmyA 3 1 100 0.269 Contact Map
2pfxA 3 0.9864 100 0.354 Contact Map
3c1lA 5 0.9864 100 0.357 Contact Map
2prrA 5 0.9864 100 0.362 Contact Map
2oyoA 4 0.9864 100 0.363 Contact Map
3lvyA 2 0.9728 100 0.401 Contact Map
2qeuA 6 0.7075 99.7 0.648 Contact Map
2ouwA 6 0.6531 99.7 0.662 Contact Map
1gu9A 3 0.6327 99.6 0.684 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0063 seconds.