YDFD - BACSU - GREMLIN Contacts

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YDFD - Uncharacterized HTH-type transcriptional regulator YdfD

UniProt:	P96681	Sequences: MSFPEEKKMKKLPKYRQIVHFIKEKIGNGEWPIGSKIPSQRTLAKDFQVNRSTVITALEELMADGLIEGTMGKGTVVINNTWTLMAKNSAPDWDQYVTSGIQMPSRKIVQEINQSESNTDLIQLSKGELSAEIFPLAVMKEMMGKVSQHMEAFGYEEPKGYLPLREALSNYLKTIGINVSSSSILIVSGALQALQLISMGLLQRGSTVYLDQPSYLYSLHVFQSAGMKLTGLPMDNEGLLPENVHLTRGERGRAILYTNPCFHNPTGILMSKKRREEILAVSENTQLPIIEDDIYRELWIDEIPPYPIKTIDKNGHVLYIGSLSKTLSPGLRIGWIVGPEPVIERLSDIKMQTDYGSSSLSQRVAAEWFTSGHYQQHVEKVRQQLKVRRELALSALETHLKEVATWNIPKGGFFVWIKILPSISMKLLYTKALSKGILINLGSIYAQEKGNYIRLSYAYASLEDLQKGIYELGLMIKELASR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	482 (374)
Sequences:	21397 (14753)
Seq/√Len:	762.8

ECOLI - YDCR YJIR AVTA YBDL ALAC ALAA MALY HIS8
BACSU - YDFD YISV GABR YHDI YDEL YDEF YCXD PATA MTNE AAT2 YUGH AAT1 CBL AAT3 HIS8
HALSA - Q9HQK2 Q9HRX4 Q9HRM6 Q9HQW2 HIS8 Q9HPL0
SULSO - Y104 AAT Q97TY7 Q97YX5 HIS8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
387_V	462_L	3.155	1.00
245_H	284_N	3.106	1.00
144_G	148_Q	3.052	1.00
386_K	390_E	2.986	1.00
207_T	228_K	2.907	1.00
435_K	474_L	2.834	1.00
272_K	276_E	2.730	1.00
405_T	418_K	2.686	1.00
173_K	178_N	2.576	1.00
187_V	193_A	2.491	1.00
391_L	466_Q	2.415	1.00
235_D	274_R	2.371	1.00
467_K	471_E	2.356	1.00
195_Q	199_M	2.294	1.00
161_Y	363_R	2.223	1.00
202_L	227_M	2.215	1.00
167_A	370_T	2.194	1.00
145_K	367_E	2.188	1.00
286_Q	316_H	2.153	1.00
169_S	181_S	2.111	1.00
467_K	470_Y	2.088	1.00
338_G	343_I	2.084	1.00
282_S	289_I	2.066	1.00
137_A	141_E	2.052	1.00
461_S	464_D	2.047	1.00
431_K	434_S	2.000	1.00
395_A	469_I	1.950	1.00
162_L	166_E	1.945	1.00
473_G	477_K	1.918	1.00
163_P	366_A	1.917	1.00
233_P	243_N	1.911	1.00
394_S	398_T	1.904	1.00
395_A	470_Y	1.884	1.00
393_L	408_I	1.879	1.00
124_L	468_G	1.877	1.00
395_A	466_Q	1.845	1.00
427_L	431_K	1.838	1.00
424_S	427_L	1.832	1.00
391_L	462_L	1.829	1.00
276_E	280_A	1.812	1.00
243_N	246_L	1.798	1.00
290_I	320_I	1.796	1.00
197_I	318_L	1.791	1.00
435_K	471_E	1.789	1.00
393_L	397_E	1.788	1.00
245_H	277_E	1.787	1.00
172_L	337_V	1.776	1.00
240_L	243_N	1.760	1.00
323_L	365_A	1.752	1.00
399_H	470_Y	1.746	1.00
280_A	284_N	1.730	1.00
159_K	347_S	1.718	1.00
271_S	274_R	1.716	1.00
283_E	314_N	1.710	1.00
277_E	280_A	1.705	1.00
167_A	170_N	1.700	1.00
207_T	230_T	1.700	1.00
166_E	181_S	1.686	1.00
397_E	406_W	1.679	1.00
395_A	398_T	1.665	1.00
143_M	364_V	1.650	1.00
392_A	469_I	1.643	1.00
391_L	395_A	1.640	1.00
170_N	370_T	1.638	1.00
336_I	346_L	1.634	1.00
159_K	165_R	1.632	1.00
198_S	222_F	1.613	1.00
241_P	281_V	1.613	1.00
242_E	277_E	1.601	1.00
166_E	170_N	1.583	1.00
243_N	247_T	1.582	1.00
183_S	340_E	1.581	1.00
272_K	306_Y	1.580	1.00
212_Q	233_P	1.578	1.00
393_L	415_V	1.576	1.00
212_Q	231_G	1.575	1.00
384_Q	387_V	1.568	1.00
392_A	415_V	1.557	1.00
294_I	322_S	1.555	1.00
241_P	277_E	1.553	1.00
245_H	285_T	1.552	1.00
358_S	361_S	1.551	1.00
439_I	453_I	1.544	1.00
384_Q	462_L	1.533	1.00
367_E	371_S	1.528	1.00
143_M	147_S	1.520	1.00
141_E	145_K	1.517	1.00
418_K	452_Y	1.502	1.00
301_D	410_K	1.496	1.00
425_M	443_S	1.494	1.00
222_F	227_M	1.494	1.00
190_A	320_I	1.483	1.00
163_P	370_T	1.480	1.00
397_E	408_I	1.478	1.00
282_S	287_L	1.469	1.00
179_V	337_V	1.463	1.00
206_S	254_A	1.462	1.00
140_K	144_G	1.442	1.00
204_R	226_G	1.438	1.00
393_L	406_W	1.434	1.00
395_A	473_G	1.422	1.00
167_A	366_A	1.413	1.00
209_Y	232_L	1.398	1.00
280_A	283_E	1.397	1.00
168_L	186_I	1.390	1.00
142_M	367_E	1.377	1.00
395_A	399_H	1.370	1.00
431_K	475_M	1.358	1.00
398_T	473_G	1.343	1.00
372_G	376_Q	1.342	1.00
208_V	222_F	1.337	1.00
273_K	276_E	1.337	1.00
470_Y	474_L	1.327	1.00
333_I	365_A	1.323	1.00
119_T	436_G	1.320	1.00
366_A	370_T	1.313	1.00
390_E	394_S	1.313	1.00
274_R	277_E	1.305	1.00
462_L	466_Q	1.305	1.00
384_Q	388_R	1.300	1.00
272_K	311_I	1.291	1.00
416_W	442_G	1.286	1.00
307_P	310_T	1.285	1.00
427_L	430_T	1.283	1.00
350_K	354_D	1.282	1.00
254_A	290_I	1.269	1.00
174_T	375_Q	1.268	1.00
197_I	290_I	1.264	1.00
427_L	433_L	1.252	1.00
273_K	277_E	1.251	1.00
168_L	184_I	1.250	1.00
248_R	281_V	1.241	1.00
379_E	383_Q	1.237	1.00
182_S	340_E	1.235	1.00
389_R	393_L	1.234	1.00
394_S	466_Q	1.229	1.00
464_D	467_K	1.228	1.00
198_S	202_L	1.226	1.00
281_V	287_L	1.225	1.00
152_A	363_R	1.222	1.00
192_Q	354_D	1.221	1.00
318_L	338_G	1.221	1.00
188_S	192_Q	1.216	1.00
162_L	181_S	1.216	1.00
281_V	285_T	1.214	1.00
165_R	169_S	1.206	1.00
367_E	370_T	1.206	1.00
379_E	382_R	1.203	1.00
184_I	337_V	1.197	1.00
426_K	430_T	1.187	1.00
399_H	473_G	1.181	1.00
141_E	144_G	1.179	1.00
163_P	363_R	1.173	1.00
428_L	431_K	1.167	1.00
338_G	346_L	1.164	1.00
432_A	472_L	1.163	1.00
169_S	184_I	1.160	1.00
199_M	225_A	1.156	1.00
200_G	349_I	1.155	1.00
180_S	340_E	1.154	1.00
237_E	274_R	1.146	1.00
168_L	335_W	1.145	1.00
428_L	433_L	1.141	1.00
161_Y	366_A	1.139	1.00
219_L	223_Q	1.133	1.00
466_Q	470_Y	1.130	1.00
345_R	348_D	1.130	1.00
276_E	311_I	1.113	1.00
248_R	287_L	1.108	1.00
235_D	240_L	1.105	1.00
209_Y	253_R	1.104	1.00
425_M	429_Y	1.101	1.00
149_H	367_E	1.100	1.00
320_I	336_I	1.100	1.00
200_G	346_L	1.097	1.00
398_T	466_Q	1.095	1.00
192_Q	350_K	1.089	1.00
185_L	343_I	1.089	1.00
164_L	186_I	1.083	1.00
321_G	335_W	1.077	1.00
177_I	309_K	1.075	1.00
142_M	146_V	1.071	1.00
193_A	320_I	1.068	1.00
185_L	346_L	1.060	1.00
383_Q	386_K	1.055	1.00
203_Q	206_S	1.050	1.00
209_Y	244_V	1.048	1.00
299_W	305_P	1.042	1.00
183_S	343_I	1.038	1.00
326_T	374_Y	1.036	1.00
435_K	475_M	1.036	1.00
160_G	165_R	1.033	1.00
429_Y	433_L	1.032	1.00
289_I	308_I	1.030	1.00
344_E	348_D	1.030	1.00
183_S	314_N	1.028	1.00
207_T	251_R	1.025	1.00
350_K	357_S	1.018	1.00
399_H	469_I	1.015	1.00
283_E	313_K	1.010	1.00
391_L	394_S	1.008	1.00
137_A	140_K	1.007	1.00
162_L	165_R	1.006	1.00
163_P	166_E	1.004	1.00
202_L	208_V	1.002	1.00
133_I	384_Q	1.001	1.00
312_D	315_G	1.000	1.00
301_D	389_R	0.997	1.00
222_F	229_L	0.994	1.00
437_I	472_L	0.994	1.00
140_K	147_S	0.994	1.00
343_I	347_S	0.983	1.00
426_K	443_S	0.982	1.00
237_E	271_S	0.980	1.00
383_Q	387_V	0.977	1.00
102_Q	105_S	0.975	1.00
392_A	465_L	0.971	1.00
190_A	322_S	0.970	1.00
430_T	434_S	0.968	1.00
171_Y	297_E	0.967	1.00
212_Q	448_E	0.966	1.00
306_Y	311_I	0.964	1.00
172_L	319_Y	0.960	1.00
140_K	148_Q	0.957	1.00
283_E	316_H	0.955	1.00
389_R	457_Y	0.953	1.00
171_Y	375_Q	0.953	1.00
279_L	311_I	0.952	1.00
245_H	281_V	0.950	1.00
170_N	173_K	0.948	1.00
239_L	256_L	0.945	1.00
272_K	304_P	0.940	1.00
258_T	278_I	0.940	1.00
124_L	465_L	0.940	1.00
180_S	183_S	0.935	1.00
211_D	263_H	0.931	1.00
238_G	274_R	0.928	1.00
293_D	296_R	0.926	1.00
239_L	274_R	0.923	1.00
220_H	223_Q	0.920	1.00
201_L	254_A	0.919	1.00
318_L	336_I	0.918	1.00
312_D	316_H	0.917	1.00
279_L	312_D	0.914	1.00
428_L	453_I	0.912	1.00
197_I	346_L	0.909	1.00
141_E	148_Q	0.909	1.00
145_K	148_Q	0.908	1.00
129_L	385_L	0.904	1.00
418_K	451_N	0.902	1.00
279_L	289_I	0.902	1.00
431_K	435_K	0.901	1.00
120_D	436_G	0.899	1.00
118_N	436_G	0.898	1.00
232_L	239_L	0.897	1.00
394_S	397_E	0.897	1.00
99_S	203_Q	0.896	1.00
288_P	318_L	0.895	1.00
309_K	312_D	0.891	1.00
430_T	433_L	0.889	1.00
432_A	475_M	0.888	1.00
429_Y	439_I	0.886	1.00
218_S	257_Y	0.886	1.00
209_Y	247_T	0.884	1.00
195_Q	353_T	0.883	1.00
111_E	114_Q	0.882	1.00
207_T	252_G	0.881	1.00
404_A	417_I	0.878	1.00
390_E	408_I	0.870	1.00
288_P	316_H	0.870	1.00
146_V	364_V	0.869	1.00
279_L	317_V	0.868	1.00
425_M	428_L	0.866	1.00
437_I	471_E	0.858	1.00
417_I	455_L	0.857	1.00
244_V	281_V	0.857	1.00
193_A	336_I	0.855	1.00
314_N	317_V	0.855	1.00
309_K	319_Y	0.854	1.00
389_R	408_I	0.853	1.00
428_L	475_M	0.853	1.00
239_L	244_V	0.845	1.00
429_Y	441_L	0.840	1.00
242_E	246_L	0.835	1.00
218_S	222_F	0.835	1.00
167_A	369_F	0.835	1.00
318_L	342_V	0.833	1.00
169_S	179_V	0.829	1.00
138_V	367_E	0.829	1.00
380_K	383_Q	0.829	1.00
232_L	247_T	0.827	1.00
442_G	452_Y	0.827	1.00
376_Q	380_K	0.820	1.00
130_S	388_R	0.818	1.00
240_L	274_R	0.818	1.00
172_L	335_W	0.817	1.00
212_Q	446_A	0.815	1.00
425_M	441_L	0.814	1.00
392_A	455_L	0.814	1.00
233_P	240_L	0.814	1.00
299_W	302_E	0.813	1.00
188_S	358_S	0.813	1.00
416_W	452_Y	0.812	1.00
425_M	451_N	0.812	1.00
375_Q	379_E	0.811	1.00
234_M	263_H	0.811	1.00
171_Y	174_T	0.809	1.00
471_E	474_L	0.803	1.00
145_K	150_M	0.794	1.00
377_H	380_K	0.789	1.00
196_L	346_L	0.788	1.00
206_S	253_R	0.787	1.00
396_L	406_W	0.787	1.00
166_E	370_T	0.786	1.00
171_Y	296_R	0.786	1.00
223_Q	229_L	0.784	1.00
171_Y	175_I	0.783	1.00
283_E	312_D	0.780	1.00
120_D	464_D	0.779	1.00
432_A	439_I	0.778	1.00
198_S	225_A	0.777	1.00
323_L	335_W	0.774	1.00
241_P	274_R	0.772	1.00
210_L	222_F	0.771	1.00
392_A	395_A	0.770	1.00
270_M	275_R	0.769	1.00
327_L	365_A	0.764	1.00
433_L	438_L	0.762	1.00
145_K	371_S	0.758	1.00
263_H	266_T	0.758	1.00
114_Q	117_S	0.756	1.00
333_I	357_S	0.754	1.00
191_L	217_Y	0.752	1.00
138_V	142_M	0.751	1.00
136_L	140_K	0.745	1.00
275_R	311_I	0.745	1.00
208_V	227_M	0.744	1.00
387_V	391_L	0.742	1.00
108_I	111_E	0.741	1.00
308_I	317_V	0.740	1.00
188_S	357_S	0.740	1.00
201_L	288_P	0.734	1.00
404_A	419_I	0.734	1.00
389_R	409_P	0.734	1.00
340_E	344_E	0.731	1.00
208_V	254_A	0.730	1.00
156_E	161_Y	0.729	1.00
463_E	466_Q	0.728	1.00
306_Y	310_T	0.727	1.00
380_K	384_Q	0.723	1.00
192_Q	196_L	0.721	1.00
137_A	148_Q	0.720	1.00
437_I	468_G	0.718	1.00
467_K	474_L	0.713	1.00
161_Y	359_S	0.713	1.00
279_L	308_I	0.710	1.00
156_E	359_S	0.706	1.00
419_I	453_I	0.704	1.00
186_I	333_I	0.703	1.00
99_S	102_Q	0.703	1.00
202_L	206_S	0.701	1.00
190_A	294_I	0.701	1.00
249_G	252_G	0.701	1.00
299_W	304_P	0.700	1.00
242_E	245_H	0.699	1.00
169_S	180_S	0.699	1.00
231_G	447_Q	0.698	1.00
471_E	475_M	0.698	1.00
388_R	462_L	0.697	1.00
246_L	250_E	0.694	1.00
405_T	420_L	0.692	1.00
423_I	428_L	0.688	1.00
138_V	373_H	0.688	1.00
256_L	287_L	0.687	1.00
301_D	386_K	0.687	1.00
460_A	464_D	0.687	1.00
391_L	465_L	0.686	1.00
138_V	377_H	0.686	1.00
376_Q	379_E	0.682	1.00
189_G	332_R	0.682	1.00
423_I	431_K	0.682	1.00
377_H	381_V	0.680	1.00
124_L	455_L	0.679	1.00
122_I	467_K	0.678	1.00
196_L	350_K	0.673	1.00
235_D	243_N	0.673	1.00
381_V	385_L	0.669	1.00
142_M	145_K	0.667	1.00
199_M	353_T	0.667	1.00
470_Y	473_G	0.666	1.00
104_P	108_I	0.666	1.00
145_K	149_H	0.665	1.00
197_I	320_I	0.665	1.00
219_L	231_G	0.664	1.00
396_L	417_I	0.663	1.00
194_L	290_I	0.660	1.00
146_V	367_E	0.659	1.00
194_L	221_V	0.658	1.00
474_L	477_K	0.658	1.00
186_I	362_Q	0.656	1.00
127_G	414_F	0.656	1.00
241_P	278_I	0.655	1.00
439_I	455_L	0.654	1.00
138_V	141_E	0.654	1.00
255_I	290_I	0.650	1.00
288_P	342_V	0.650	1.00
248_R	252_G	0.650	1.00
144_G	147_S	0.649	1.00
198_S	227_M	0.648	1.00
122_I	468_G	0.646	1.00
196_L	349_I	0.644	1.00
272_K	310_T	0.642	1.00
193_A	334_G	0.641	1.00
210_L	229_L	0.640	1.00
101_I	105_S	0.639	1.00
270_M	274_R	0.638	1.00
165_R	181_S	0.637	1.00
363_R	366_A	0.637	1.00
168_L	323_L	0.635	1.00
399_H	466_Q	0.634	1.00
179_V	183_S	0.633	1.00
363_R	367_E	0.633	1.00
185_L	347_S	0.632	1.00
291_E	308_I	0.631	1.00
446_A	452_Y	0.630	1.00
101_I	104_P	0.629	1.00
378_V	382_R	0.628	1.00
248_R	251_R	0.627	1.00
382_R	386_K	0.627	1.00
395_A	465_L	0.625	1.00
344_E	347_S	0.621	1.00
307_P	319_Y	0.619	1.00
208_V	255_I	0.619	1.00
211_D	239_L	0.618	1.00
186_I	357_S	0.618	1.00
396_L	469_I	0.616	1.00
161_Y	362_Q	0.615	1.00
123_Q	438_L	0.614	1.00
360_L	364_V	0.614	1.00
136_L	139_M	0.614	1.00
199_M	349_I	0.613	1.00
214_S	219_L	0.613	1.00
207_T	249_G	0.612	1.00
270_M	278_I	0.611	1.00
156_E	356_G	0.610	1.00
138_V	371_S	0.610	1.00
373_H	376_Q	0.610	1.00
392_A	457_Y	0.610	1.00
187_V	334_G	0.609	1.00
244_V	278_I	0.609	1.00
230_T	247_T	0.609	1.00
361_S	364_V	0.608	1.00
375_Q	378_V	0.606	1.00
235_D	238_G	0.605	1.00
122_I	460_A	0.601	1.00
185_L	338_G	0.601	1.00
142_M	364_V	0.599	1.00
237_E	273_K	0.597	1.00
309_K	317_V	0.597	1.00
241_P	245_H	0.597	1.00
303_I	410_K	0.596	1.00
106_R	109_V	0.596	1.00
387_V	390_E	0.594	1.00
166_E	169_S	0.592	1.00
325_K	332_R	0.591	1.00
359_S	363_R	0.591	1.00
104_P	107_K	0.591	1.00
385_L	458_A	0.590	1.00
301_D	408_I	0.588	1.00
239_L	270_M	0.587	1.00
234_M	268_I	0.587	1.00
428_L	439_I	0.586	1.00
315_G	339_P	0.586	1.00
333_I	361_S	0.585	1.00
245_H	249_G	0.583	1.00
105_S	108_I	0.582	1.00
121_L	436_G	0.581	1.00
122_I	471_E	0.581	1.00
195_Q	225_A	0.577	1.00
146_V	149_H	0.574	1.00
201_L	318_L	0.574	1.00
175_I	296_R	0.572	1.00
135_P	138_V	0.569	1.00
155_Y	325_K	0.568	1.00
341_P	344_E	0.566	1.00
109_V	113_N	0.564	1.00
371_S	375_Q	0.563	1.00
423_I	427_L	0.563	1.00
394_S	408_I	0.562	1.00
107_K	110_Q	0.561	1.00
396_L	404_A	0.561	1.00
177_I	307_P	0.559	1.00
174_T	297_E	0.559	1.00
100_G	103_M	0.559	1.00
279_L	283_E	0.558	1.00
125_S	438_L	0.558	1.00
364_V	367_E	0.557	1.00
282_S	286_Q	0.556	1.00
446_A	450_G	0.556	1.00
406_W	415_V	0.553	1.00
407_N	418_K	0.552	1.00
236_N	405_T	0.552	1.00
210_L	219_L	0.549	1.00
108_I	112_I	0.547	1.00
426_K	429_Y	0.547	1.00
240_L	277_E	0.546	1.00
164_L	168_L	0.546	1.00
100_G	104_P	0.546	1.00
248_R	285_T	0.544	1.00
187_V	336_I	0.544	1.00
295_Y	414_F	0.544	1.00
300_I	386_K	0.542	1.00
198_S	256_L	0.541	1.00
169_S	173_K	0.541	1.00
399_H	403_V	0.541	1.00
191_L	215_Y	0.538	1.00
246_L	249_G	0.538	1.00
275_R	308_I	0.538	1.00
425_M	433_L	0.538	1.00
300_I	457_Y	0.537	1.00
279_L	313_K	0.536	1.00
293_D	319_Y	0.536	1.00
248_R	253_R	0.535	1.00
106_R	110_Q	0.535	1.00
141_E	371_S	0.533	1.00
308_I	311_I	0.532	1.00
297_E	326_T	0.529	1.00
236_N	407_N	0.528	1.00
102_Q	106_R	0.526	1.00
442_G	446_A	0.526	1.00
233_P	247_T	0.522	1.00
403_V	406_W	0.521	1.00
140_K	143_M	0.520	1.00
425_M	453_I	0.519	1.00
338_G	342_V	0.518	1.00
123_Q	126_K	0.518	1.00
399_H	477_K	0.518	1.00
437_I	475_M	0.516	1.00
406_W	417_I	0.516	1.00
291_E	319_Y	0.516	1.00
422_S	451_N	0.515	1.00
120_D	467_K	0.514	1.00
277_E	281_V	0.514	1.00
429_Y	432_A	0.512	1.00
269_L	299_W	0.512	1.00
216_L	444_I	0.511	1.00
239_L	278_I	0.509	1.00
287_L	316_H	0.508	1.00
129_L	329_P	0.508	1.00
312_D	317_V	0.506	1.00
173_K	177_I	0.506	1.00
210_L	231_G	0.506	1.00
372_G	375_Q	0.505	1.00
103_M	106_R	0.504	1.00
105_S	109_V	0.503	1.00
272_K	275_R	0.503	1.00
220_H	352_Q	0.503	1.00
159_K	185_L	0.502	1.00
199_M	224_S	0.502	1.00
386_K	389_R	0.501	1.00
255_I	287_L	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4tv7A	2	0.9378	100	0.305	Contact Map
3pplA	2	0.8029	100	0.389	Contact Map
3f6tA	2	0.8838	100	0.408	Contact Map
3qguA	2	0.7988	100	0.416	Contact Map
3ez1A	2	0.7842	100	0.427	Contact Map
2r2nA	2	0.8091	100	0.437	Contact Map
4je5A	2	0.8237	100	0.439	Contact Map
2x5fA	2	0.8216	100	0.44	Contact Map
1vp4A	2	0.832	100	0.442	Contact Map
3aowA	2	0.8174	100	0.449	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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