YDFA - BACSU - GREMLIN Contacts

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YDFA - Putative arsenical pump membrane protein YdfA

UniProt:	P96678	Sequences: MTSMILAVFIFLLTLVLVIWQPKNLSIGWSACGGAVLALIAGVVNFHDVLTVTGIVWNATLAFVAIILISLILDNIGFFEWAALHMAKAAKGYGVRMFVYVSLLGAIVAALFANDGAALILTPIVLAMVRALHFNEKLVFPFIIASGFIADTTSLPFVVSNLVNIVSADYFHITFIDYASRMVVPYLFSLLASIIVLYLFFRKSIPKRYDLTEVKKPVEAIKDQNMFRLSWYILGLLLIGYFASEFFSIPVSVVAGSIAIIFLIAAQKSPAVHTKKVVKEAPWAIVFFSIGMYVVVYGVRNAGLTDVLSDVIQAAADQGLFAGTIGMGFIAAILSSIMNNLPTVMIDALAIAGTDTHGMMREALIYANVIGSDLGPKITPIGSLATLLWLHVLSHKGMKISWGTYFKTGIILTIPTLLITLVGLYIWLLIIHSCF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	435 (394)
Sequences:	4692 (3101)
Seq/√Len:	156.2

ECOLI - ARSB YBIR CITT TTDT YBHI YFJV
BACSU - YDFA YWRK YFLS
SULSO - Q980X8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
125_V	146_S	3.952	1.00
93_Y	96_R	3.814	1.00
380_P	390_L	3.650	1.00
85_H	89_A	3.647	1.00
404_T	407_K	3.466	1.00
231_W	235_G	3.460	1.00
118_A	150_A	3.436	1.00
224_Q	228_R	2.945	1.00
64_V	286_V	2.931	1.00
48_D	301_N	2.815	1.00
153_T	190_L	2.739	1.00
118_A	389_W	2.666	1.00
75_N	276_K	2.546	1.00
46_F	50_L	2.526	1.00
409_G	413_T	2.487	1.00
105_G	121_L	2.483	1.00
45_N	48_D	2.477	1.00
143_I	389_W	2.420	1.00
336_S	378_I	2.370	1.00
166_V	348_A	2.319	1.00
216_K	219_E	2.315	1.00
306_D	310_D	2.314	1.00
237_L	241_Y	2.309	1.00
174_T	177_D	2.300	1.00
81_W	85_H	2.281	1.00
367_A	371_G	2.251	1.00
406_F	410_I	2.220	1.00
16_V	20_W	2.211	1.00
235_G	239_I	2.198	1.00
225_N	228_R	2.182	1.00
332_A	417_L	2.165	1.00
154_S	161_N	2.137	1.00
329_F	421_L	2.119	1.00
158_V	168_A	2.114	1.00
9_F	13_L	2.068	1.00
236_L	240_G	2.060	1.00
46_F	49_V	2.057	1.00
126_L	398_M	2.025	1.00
103_L	190_L	2.011	1.00
227_F	231_W	1.966	1.00
188_F	423_G	1.958	1.00
223_D	226_M	1.956	1.00
15_L	18_V	1.952	1.00
176_I	180_S	1.951	1.00
177_D	180_S	1.941	1.00
7_A	11_F	1.938	1.00
47_H	51_T	1.932	1.00
228_R	231_W	1.914	1.00
262_F	266_A	1.884	1.00
410_I	413_T	1.839	1.00
48_D	51_T	1.833	1.00
130_R	396_K	1.797	1.00
122_T	143_I	1.795	1.00
90_A	100_Y	1.791	1.00
418_L	422_V	1.781	1.00
325_I	421_L	1.777	1.00
413_T	417_L	1.764	1.00
183_V	187_L	1.760	1.00
10_I	37_L	1.757	1.00
11_F	14_T	1.749	1.00
75_N	280_E	1.745	1.00
18_V	21_Q	1.733	1.00
47_H	50_L	1.712	1.00
239_I	242_F	1.708	1.00
263_L	267_Q	1.705	1.00
8_V	304_L	1.693	1.00
225_N	229_L	1.653	1.00
230_S	241_Y	1.643	1.00
333_I	337_I	1.629	1.00
195_I	199_L	1.627	1.00
17_L	21_Q	1.617	1.00
233_I	237_L	1.585	1.00
330_I	334_L	1.575	1.00
180_S	184_V	1.570	1.00
394_S	399_K	1.570	1.00
226_M	230_S	1.549	1.00
251_V	255_A	1.547	1.00
147_G	389_W	1.546	1.00
95_V	198_Y	1.544	1.00
140_F	404_T	1.543	1.00
155_L	186_Y	1.539	1.00
73_L	78_F	1.531	1.00
329_F	333_I	1.521	1.00
64_V	68_L	1.514	1.00
252_S	262_F	1.511	1.00
201_F	408_T	1.500	1.00
201_F	205_I	1.499	1.00
14_T	21_Q	1.499	1.00
242_F	245_E	1.495	1.00
26_S	29_W	1.490	1.00
258_I	262_F	1.489	1.00
113_A	116_G	1.479	1.00
233_I	241_Y	1.476	1.00
251_V	254_V	1.472	1.00
88_K	217_P	1.465	1.00
189_S	416_T	1.456	1.00
367_A	424_L	1.451	1.00
259_A	262_F	1.448	1.00
307_V	310_D	1.447	1.00
218_V	224_Q	1.426	1.00
230_S	234_L	1.419	1.00
223_D	227_F	1.419	1.00
242_F	246_F	1.412	1.00
17_L	22_P	1.409	1.00
15_L	21_Q	1.396	1.00
227_F	230_S	1.396	1.00
238_L	241_Y	1.395	1.00
405_Y	409_G	1.394	1.00
255_A	262_F	1.392	1.00
135_N	204_S	1.387	1.00
201_F	204_S	1.359	1.00
224_Q	227_F	1.345	1.00
311_V	314_A	1.341	1.00
243_A	246_F	1.332	1.00
275_K	279_K	1.318	1.00
228_R	232_Y	1.308	1.00
380_P	387_L	1.305	1.00
74_D	280_E	1.304	1.00
14_T	295_V	1.303	1.00
107_I	111_L	1.301	1.00
29_W	33_G	1.299	1.00
234_L	238_L	1.285	1.00
344_V	372_S	1.282	1.00
37_L	40_I	1.280	1.00
144_I	148_F	1.268	1.00
99_V	198_Y	1.261	1.00
18_V	22_P	1.257	1.00
331_A	372_S	1.246	1.00
403_G	407_K	1.229	1.00
243_A	247_F	1.222	1.00
129_V	142_F	1.218	1.00
233_I	236_L	1.214	1.00
321_F	425_Y	1.211	1.00
251_V	262_F	1.207	1.00
195_I	198_Y	1.207	1.00
241_Y	245_E	1.206	1.00
39_L	43_V	1.206	1.00
99_V	194_I	1.203	1.00
260_I	264_I	1.194	1.00
122_T	389_W	1.189	1.00
196_V	415_P	1.188	1.00
11_F	18_V	1.183	1.00
135_N	140_F	1.183	1.00
39_L	42_G	1.178	1.00
28_G	31_A	1.175	1.00
35_A	291_G	1.174	1.00
407_K	410_I	1.173	1.00
102_S	145_A	1.156	1.00
8_V	12_L	1.152	1.00
185_P	189_S	1.149	1.00
10_I	20_W	1.146	1.00
12_L	16_V	1.144	1.00
108_V	117_A	1.141	1.00
185_P	370_I	1.137	1.00
192_A	419_I	1.137	1.00
36_V	40_I	1.135	1.00
311_V	315_A	1.135	1.00
16_V	22_P	1.131	1.00
163_V	373_D	1.125	1.00
235_G	238_L	1.121	1.00
13_L	17_L	1.117	1.00
103_L	107_I	1.113	1.00
65_A	259_A	1.110	1.00
229_L	265_A	1.105	0.99
178_Y	182_M	1.103	0.99
260_I	263_L	1.102	0.99
68_L	278_V	1.096	0.99
10_I	14_T	1.081	0.99
21_Q	27_I	1.072	0.99
11_F	21_Q	1.067	0.99
13_L	20_W	1.063	0.99
234_L	237_L	1.059	0.99
199_L	203_K	1.059	0.99
31_A	35_A	1.058	0.99
162_L	293_Y	1.053	0.99
252_S	266_A	1.053	0.99
39_L	44_V	1.050	0.99
17_L	20_W	1.049	0.99
10_I	18_V	1.047	0.99
263_L	266_A	1.046	0.99
51_T	54_G	1.045	0.99
12_L	19_I	1.041	0.99
45_N	49_V	1.036	0.99
401_S	404_T	1.034	0.99
331_A	368_N	1.033	0.99
66_I	116_G	1.033	0.99
369_V	372_S	1.031	0.99
240_G	244_S	1.028	0.99
17_L	30_S	1.027	0.99
26_S	32_C	1.023	0.99
252_S	255_A	1.021	0.99
237_L	240_G	1.019	0.99
230_S	238_L	1.015	0.99
28_G	32_C	1.014	0.99
289_S	376_P	1.012	0.99
55_I	290_I	1.011	0.99
115_D	161_N	1.010	0.99
307_V	311_V	1.010	0.99
376_P	386_T	1.008	0.99
219_E	223_D	1.006	0.99
32_C	40_I	1.005	0.99
328_G	421_L	1.004	0.99
7_A	302_A	1.004	0.99
101_V	125_V	0.999	0.99
202_R	205_I	0.993	0.99
410_I	414_I	0.990	0.99
235_G	246_F	0.990	0.99
232_Y	235_G	0.988	0.99
229_L	232_Y	0.988	0.99
38_A	42_G	0.987	0.99
191_L	195_I	0.986	0.99
156_P	186_Y	0.983	0.99
259_A	263_L	0.978	0.99
143_I	393_L	0.971	0.99
175_F	179_A	0.971	0.99
297_Y	301_N	0.968	0.99
261_I	265_A	0.968	0.99
251_V	266_A	0.966	0.99
141_P	197_L	0.960	0.99
35_A	38_A	0.959	0.99
148_F	152_T	0.952	0.98
221_I	227_F	0.951	0.98
85_H	88_K	0.950	0.98
91_K	96_R	0.949	0.98
240_G	245_E	0.941	0.98
198_Y	201_F	0.939	0.98
104_L	108_V	0.934	0.98
399_K	403_G	0.933	0.98
237_L	242_F	0.931	0.98
226_M	229_L	0.931	0.98
229_L	233_I	0.931	0.98
401_S	407_K	0.924	0.98
343_T	347_D	0.923	0.98
252_S	259_A	0.923	0.98
288_F	291_G	0.922	0.98
144_I	408_T	0.921	0.98
32_C	39_L	0.921	0.98
335_S	372_S	0.920	0.98
241_Y	244_S	0.915	0.98
371_G	375_G	0.911	0.98
378_I	413_T	0.911	0.98
310_D	314_A	0.910	0.98
15_L	19_I	0.907	0.98
65_A	255_A	0.906	0.98
222_K	225_N	0.904	0.98
237_L	245_E	0.903	0.98
159_V	175_F	0.901	0.98
27_I	339_N	0.895	0.98
15_L	22_P	0.895	0.98
232_Y	243_A	0.893	0.98
29_W	39_L	0.892	0.98
115_D	154_S	0.891	0.98
14_T	22_P	0.889	0.98
414_I	418_L	0.888	0.98
240_G	243_A	0.886	0.98
163_V	341_L	0.886	0.98
252_S	256_G	0.885	0.98
116_G	288_F	0.884	0.98
219_E	222_K	0.876	0.97
259_A	266_A	0.875	0.97
389_W	393_L	0.869	0.97
251_V	259_A	0.867	0.97
184_V	423_G	0.867	0.97
198_Y	202_R	0.865	0.97
289_S	341_L	0.863	0.97
336_S	339_N	0.859	0.97
402_W	413_T	0.858	0.97
113_A	154_S	0.853	0.97
59_A	67_I	0.850	0.97
129_V	136_E	0.850	0.97
255_A	258_I	0.847	0.97
10_I	41_A	0.842	0.97
114_N	383_S	0.838	0.97
33_G	260_I	0.835	0.97
60_T	290_I	0.834	0.97
112_F	143_I	0.834	0.97
235_G	242_F	0.834	0.97
64_V	283_W	0.833	0.97
199_L	202_R	0.832	0.96
383_S	386_T	0.832	0.96
10_I	13_L	0.829	0.96
228_R	239_I	0.829	0.96
331_A	347_D	0.828	0.96
411_I	414_I	0.826	0.96
36_V	39_L	0.824	0.96
182_M	369_V	0.824	0.96
10_I	19_I	0.824	0.96
232_Y	236_L	0.823	0.96
327_M	368_N	0.821	0.96
58_N	252_S	0.820	0.96
71_L	74_D	0.818	0.96
179_A	183_V	0.817	0.96
251_V	267_Q	0.813	0.96
289_S	340_N	0.810	0.96
237_L	243_A	0.809	0.96
56_V	59_A	0.809	0.96
160_S	376_P	0.806	0.96
229_L	236_L	0.805	0.96
233_I	238_L	0.805	0.96
33_G	37_L	0.801	0.96
255_A	259_A	0.799	0.96
50_L	54_G	0.796	0.95
198_Y	204_S	0.796	0.95
41_A	44_V	0.795	0.95
155_L	182_M	0.795	0.95
236_L	239_I	0.795	0.95
334_L	343_T	0.792	0.95
166_V	341_L	0.791	0.95
373_D	386_T	0.790	0.95
162_L	376_P	0.789	0.95
331_A	371_G	0.788	0.95
10_I	34_G	0.786	0.95
254_V	258_I	0.785	0.95
409_G	412_L	0.782	0.95
69_I	237_L	0.782	0.95
157_F	160_S	0.781	0.95
332_A	413_T	0.781	0.95
58_N	169_D	0.780	0.95
13_L	18_V	0.780	0.95
149_I	190_L	0.777	0.95
235_G	241_Y	0.776	0.95
104_L	150_A	0.776	0.95
261_I	266_A	0.767	0.94
377_K	386_T	0.764	0.94
256_G	260_I	0.762	0.94
221_I	224_Q	0.762	0.94
19_I	22_P	0.762	0.94
38_A	298_G	0.761	0.94
324_T	367_A	0.760	0.94
215_K	219_E	0.758	0.94
216_K	220_A	0.757	0.94
66_I	113_A	0.756	0.94
340_N	381_I	0.756	0.94
35_A	39_L	0.755	0.94
9_F	17_L	0.752	0.94
222_K	226_M	0.751	0.94
221_I	225_N	0.751	0.94
148_F	412_L	0.750	0.94
8_V	17_L	0.750	0.94
26_S	30_S	0.750	0.94
9_F	16_V	0.745	0.94
230_S	235_G	0.744	0.94
15_L	20_W	0.743	0.93
136_E	140_F	0.742	0.93
177_D	181_R	0.742	0.93
27_I	30_S	0.741	0.93
306_D	313_Q	0.739	0.93
100_Y	104_L	0.738	0.93
109_A	341_L	0.738	0.93
27_I	32_C	0.733	0.93
249_I	256_G	0.732	0.93
421_L	425_Y	0.732	0.93
188_F	419_I	0.731	0.93
339_N	376_P	0.730	0.93
185_P	188_F	0.730	0.93
194_I	198_Y	0.728	0.93
168_A	175_F	0.728	0.93
275_K	278_V	0.727	0.93
320_L	324_T	0.726	0.93
62_A	66_I	0.726	0.93
63_F	342_P	0.725	0.93
234_L	241_Y	0.725	0.93
27_I	39_L	0.724	0.93
166_V	345_M	0.723	0.93
56_V	162_L	0.722	0.92
37_L	258_I	0.720	0.92
149_I	153_T	0.720	0.92
85_H	248_S	0.717	0.92
251_V	261_I	0.712	0.92
179_A	186_Y	0.710	0.92
13_L	19_I	0.707	0.92
402_W	409_G	0.706	0.92
303_G	306_D	0.706	0.92
373_D	376_P	0.704	0.92
239_I	243_A	0.702	0.91
86_M	100_Y	0.702	0.91
230_S	236_L	0.697	0.91
167_S	369_V	0.695	0.91
161_N	164_N	0.692	0.91
186_Y	190_L	0.692	0.91
31_A	36_V	0.689	0.91
223_D	230_S	0.689	0.91
238_L	246_F	0.688	0.91
105_G	146_S	0.685	0.90
247_F	250_P	0.685	0.90
14_T	34_G	0.684	0.90
31_A	39_L	0.684	0.90
193_S	197_L	0.682	0.90
324_T	424_L	0.680	0.90
98_F	142_F	0.679	0.90
30_S	33_G	0.678	0.90
177_D	362_E	0.678	0.90
380_P	402_W	0.677	0.90
153_T	160_S	0.676	0.90
109_A	117_A	0.673	0.90
251_V	256_G	0.672	0.90
151_D	383_S	0.671	0.89
416_T	420_T	0.671	0.89
298_G	302_A	0.671	0.89
296_V	385_A	0.670	0.89
223_D	228_R	0.667	0.89
228_R	235_G	0.667	0.89
63_F	113_A	0.667	0.89
25_L	29_W	0.664	0.89
284_A	287_F	0.663	0.89
321_F	422_V	0.662	0.89
102_S	197_L	0.661	0.89
179_A	182_M	0.660	0.89
74_D	127_A	0.659	0.89
378_I	410_I	0.654	0.88
114_N	161_N	0.654	0.88
232_Y	239_I	0.652	0.88
114_N	385_A	0.652	0.88
59_A	343_T	0.650	0.88
170_Y	348_A	0.649	0.88
38_A	43_V	0.645	0.88
116_G	377_K	0.644	0.88
403_G	406_F	0.641	0.87
258_I	261_I	0.641	0.87
369_V	386_T	0.641	0.87
31_A	34_G	0.639	0.87
125_V	129_V	0.638	0.87
115_D	164_N	0.637	0.87
134_F	142_F	0.635	0.87
149_I	160_S	0.635	0.87
155_L	373_D	0.634	0.87
254_V	261_I	0.634	0.87
378_I	382_G	0.633	0.87
386_T	389_W	0.633	0.87
230_S	233_I	0.626	0.86
14_T	30_S	0.625	0.86
160_S	341_L	0.624	0.86
379_T	382_G	0.621	0.86
10_I	15_L	0.620	0.85
147_G	409_G	0.618	0.85
198_Y	205_I	0.618	0.85
163_V	388_L	0.618	0.85
340_N	376_P	0.618	0.85
63_F	153_T	0.617	0.85
84_L	88_K	0.615	0.85
155_L	374_L	0.614	0.85
363_A	425_Y	0.613	0.85
252_S	263_L	0.611	0.85
114_N	342_P	0.609	0.84
14_T	20_W	0.609	0.84
16_V	217_P	0.608	0.84
238_L	245_E	0.608	0.84
182_M	185_P	0.607	0.84
373_D	383_S	0.606	0.84
335_S	340_N	0.605	0.84
11_F	299_V	0.605	0.84
289_S	298_G	0.603	0.84
56_V	163_V	0.602	0.84
406_F	409_G	0.600	0.84
406_F	413_T	0.600	0.84
288_F	292_M	0.599	0.83
163_V	339_N	0.599	0.83
233_I	240_G	0.598	0.83
30_S	35_A	0.598	0.83
299_V	308_L	0.596	0.83
392_V	396_K	0.596	0.83
276_K	279_K	0.596	0.83
162_L	167_S	0.596	0.83
150_A	385_A	0.596	0.83
334_L	337_I	0.595	0.83
34_G	39_L	0.595	0.83
47_H	224_Q	0.593	0.83
34_G	37_L	0.589	0.82
10_I	21_Q	0.589	0.82
106_A	377_K	0.588	0.82
66_I	147_G	0.586	0.82
84_L	131_A	0.586	0.82
265_A	268_K	0.585	0.82
93_Y	191_L	0.585	0.82
176_I	179_A	0.583	0.82
32_C	38_A	0.582	0.82
237_L	244_S	0.581	0.82
14_T	18_V	0.581	0.82
192_A	196_V	0.580	0.82
245_E	249_I	0.579	0.81
114_N	340_N	0.578	0.81
250_P	253_V	0.578	0.81
109_A	114_N	0.577	0.81
160_S	386_T	0.577	0.81
312_I	326_G	0.577	0.81
161_N	342_P	0.577	0.81
13_L	21_Q	0.576	0.81
413_T	420_T	0.576	0.81
154_S	343_T	0.574	0.81
182_M	186_Y	0.574	0.81
115_D	388_L	0.574	0.81
407_K	411_I	0.574	0.81
13_L	16_V	0.574	0.81
80_E	131_A	0.573	0.81
32_C	36_V	0.572	0.81
385_A	389_W	0.571	0.80
236_L	243_A	0.570	0.80
165_I	371_G	0.570	0.80
106_A	148_F	0.570	0.80
255_A	266_A	0.569	0.80
163_V	336_S	0.569	0.80
44_V	51_T	0.569	0.80
215_K	239_I	0.568	0.80
239_I	246_F	0.568	0.80
401_S	405_Y	0.567	0.80
114_N	151_D	0.567	0.80
203_K	218_V	0.567	0.80
32_C	35_A	0.566	0.80
122_T	392_V	0.563	0.80
231_W	241_Y	0.562	0.79
372_S	375_G	0.562	0.79
80_E	84_L	0.557	0.79
413_T	416_T	0.557	0.79
14_T	17_L	0.556	0.79
33_G	38_A	0.556	0.79
122_T	154_S	0.556	0.79
315_A	326_G	0.555	0.79
102_S	149_I	0.555	0.79
72_I	277_V	0.554	0.78
341_L	344_V	0.554	0.78
31_A	38_A	0.553	0.78
182_M	366_Y	0.552	0.78
71_L	277_V	0.551	0.78
344_V	348_A	0.550	0.78
120_I	390_L	0.550	0.78
417_L	420_T	0.547	0.78
34_G	49_V	0.547	0.78
348_A	352_A	0.545	0.77
113_A	339_N	0.543	0.77
67_I	383_S	0.543	0.77
218_V	223_D	0.543	0.77
341_L	384_L	0.542	0.77
309_S	312_I	0.541	0.77
197_L	201_F	0.540	0.77
28_G	33_G	0.538	0.76
282_P	289_S	0.538	0.76
8_V	13_L	0.538	0.76
254_V	262_F	0.537	0.76
147_G	382_G	0.536	0.76
335_S	339_N	0.535	0.76
109_A	163_V	0.535	0.76
233_I	245_E	0.533	0.76
160_S	293_Y	0.532	0.76
101_V	121_L	0.532	0.76
63_F	341_L	0.531	0.76
180_S	280_E	0.531	0.76
11_F	20_W	0.530	0.75
359_M	362_E	0.528	0.75
343_T	346_I	0.528	0.75
99_V	103_L	0.527	0.75
153_T	339_N	0.526	0.75
162_L	386_T	0.526	0.75
153_T	341_L	0.525	0.75
217_P	221_I	0.525	0.75
121_L	379_T	0.525	0.75
115_D	123_P	0.525	0.75
114_N	162_L	0.524	0.75
14_T	19_I	0.522	0.74
29_W	36_V	0.522	0.74
154_S	163_V	0.522	0.74
113_A	341_L	0.522	0.74
157_F	184_V	0.521	0.74
409_G	420_T	0.520	0.74
148_F	193_S	0.519	0.74
336_S	346_I	0.519	0.74
238_L	242_F	0.519	0.74
7_A	298_G	0.518	0.74
310_D	313_Q	0.518	0.74
63_F	67_I	0.516	0.73
230_S	240_G	0.516	0.73
278_V	287_F	0.515	0.73
16_V	21_Q	0.515	0.73
36_V	41_A	0.514	0.73
345_M	384_L	0.512	0.73
81_W	84_L	0.511	0.73
321_F	359_M	0.511	0.73
335_S	344_V	0.510	0.73
312_I	364_L	0.509	0.72
218_V	222_K	0.509	0.72
113_A	117_A	0.509	0.72
284_A	387_L	0.509	0.72
91_K	203_K	0.507	0.72
43_V	49_V	0.506	0.72
339_N	346_I	0.505	0.72
33_G	64_V	0.505	0.72
115_D	340_N	0.504	0.72
217_P	220_A	0.504	0.72
115_D	384_L	0.503	0.72
183_V	186_Y	0.503	0.72
214_V	218_V	0.501	0.71
234_L	240_G	0.500	0.71

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4f35D	2	0.9195	100	0.475	Contact Map
4r1iA	2	0.9655	99.9	0.73	Contact Map
4r0cA	3	0.9563	99.8	0.749	Contact Map
3tdsE	3	0.5103	53.3	0.955	Contact Map
3w9iA	3	0.3701	33.2	0.96	Contact Map
4dx5A	3	0.3908	29.3	0.961	Contact Map
4fc4A	3	0.5057	16.2	0.966	Contact Map
3aqpA	1	0.3586	15.8	0.966	Contact Map
3klyA	3	0.4759	15	0.966	Contact Map
3qe7A	2	0.4529	14.8	0.966	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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