YDCC - BACSU - GREMLIN Contacts

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YDCC - Sporulation protein YdcC

UniProt:	P96619	Sequences: MKKVRKSFVLLLTGLLAVLILSACGQKTQQDIVAGLDEKAKEYTSYKAKAKMTIETGSEPQVYNVEIWHKKPSLYRVYLENPKKDQNQVILRNENGVFVLTPSLNKSFRFQSDWPNNSSQVYLFESLVKDVQNDSDAVFTAKEKKYVFETKTNYQHNKMLPTQEITFNKKDMSPSSVKVMDTDRKVMVKVEFSSFEFNKQFDKESFDEKKNMTLSQMDVATSAKPSDTFAVKTPLELPLGVKLLEEKDISTEDGKRIIMTYGGEKSFTLIQEKAQIAKASSSVTLNGEPVNLGYTIGALSDASLSWTYDGVDYLLSSKDLSKEEMVTVAKSMQGQSSK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	338 (323)
Sequences:	385 (327)
Seq/√Len:	18.2

BACSU - YDCC
HALSA - Q9HQM2 Q9HRY9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
168_N	171_D	6.546	1.00
269_L	332_M	5.459	1.00
164_E	178_K	5.131	1.00
259_M	271_Q	4.093	1.00
74_L	94_E	4.029	1.00
68_W	76_R	3.464	1.00
138_V	149_E	3.255	0.99
49_K	194_S	3.115	0.99
100_L	212_M	3.113	0.99
70_K	203_K	2.973	0.99
100_L	211_N	2.901	0.99
297_G	304_L	2.761	0.98
6_K	56_T	2.647	0.97
243_L	259_M	2.535	0.97
49_K	66_E	2.486	0.96
232_K	271_Q	2.466	0.96
201_F	205_S	2.381	0.95
266_S	319_D	2.308	0.94
51_K	191_E	2.268	0.94
240_G	264_E	2.208	0.93
173_S	197_F	2.199	0.93
92_R	98_F	2.185	0.92
278_K	309_D	2.152	0.92
249_I	253_D	2.152	0.92
67_I	89_V	2.128	0.91
243_L	246_E	2.091	0.91
45_S	199_K	2.090	0.91
119_S	130_D	2.051	0.90
189_K	198_N	1.983	0.88
166_T	176_S	1.925	0.87
221_T	224_K	1.888	0.85
181_D	185_K	1.872	0.85
131_V	167_F	1.835	0.84
68_W	205_S	1.809	0.83
201_F	204_E	1.787	0.82
71_K	304_L	1.733	0.80
42_E	204_E	1.710	0.79
199_K	243_L	1.694	0.78
15_L	18_V	1.689	0.78
204_E	210_K	1.685	0.78
220_A	223_A	1.677	0.78
11_L	207_D	1.673	0.77
77_V	118_S	1.667	0.77
70_K	297_G	1.662	0.77
44_T	72_P	1.662	0.77
244_L	262_G	1.652	0.77
168_N	175_S	1.631	0.76
98_F	310_G	1.630	0.76
114_W	122_Y	1.619	0.75
178_K	236_E	1.612	0.75
124_F	195_F	1.582	0.73
263_G	269_L	1.579	0.73
10_L	20_I	1.550	0.72
22_S	322_K	1.543	0.71
127_L	177_V	1.536	0.71
164_E	236_E	1.529	0.71
66_E	78_Y	1.522	0.70
13_T	51_K	1.518	0.70
106_K	119_S	1.507	0.70
256_R	272_E	1.504	0.69
13_T	259_M	1.503	0.69
243_L	331_S	1.493	0.69
54_I	77_V	1.472	0.68
99_V	163_Q	1.472	0.68
185_K	313_Y	1.471	0.68
74_L	182_T	1.463	0.67
88_Q	122_Y	1.447	0.66
45_S	200_Q	1.445	0.66
64_N	304_L	1.415	0.65
248_D	255_K	1.413	0.64
229_F	257_I	1.411	0.64
216_Q	219_V	1.399	0.64
57_G	68_W	1.390	0.63
22_S	85_D	1.387	0.63
254_G	311_V	1.382	0.63
161_P	256_R	1.379	0.62
234_P	331_S	1.376	0.62
304_L	325_M	1.374	0.62
45_S	204_E	1.371	0.62
93_N	163_Q	1.356	0.61
53_T	191_E	1.347	0.61
65_V	240_G	1.346	0.61
236_E	327_T	1.315	0.59
228_T	261_Y	1.314	0.59
150_T	183_D	1.313	0.59
129_K	202_D	1.310	0.58
176_S	191_E	1.307	0.58
18_V	219_V	1.297	0.58
16_L	171_D	1.291	0.57
289_P	298_A	1.290	0.57
53_T	328_V	1.288	0.57
277_A	328_V	1.280	0.57
91_L	211_N	1.275	0.56
160_L	179_V	1.267	0.56
22_S	82_P	1.261	0.55
41_K	185_K	1.257	0.55
93_N	110_F	1.254	0.55
225_P	228_T	1.248	0.55
96_G	114_W	1.246	0.54
48_A	180_M	1.245	0.54
15_L	165_I	1.239	0.54
29_Q	178_K	1.231	0.54
292_L	330_K	1.229	0.53
197_F	299_L	1.220	0.53
88_Q	104_L	1.220	0.53
67_I	111_Q	1.217	0.53
304_L	330_K	1.211	0.52
88_Q	102_P	1.208	0.52
176_S	189_K	1.207	0.52
221_T	288_E	1.202	0.52
20_I	252_E	1.177	0.50
52_M	122_Y	1.173	0.50
148_F	165_I	1.158	0.49
263_G	267_F	1.156	0.49
130_D	272_E	1.142	0.48
130_D	150_T	1.141	0.48
209_K	229_F	1.135	0.48
70_K	74_L	1.131	0.47
39_K	322_K	1.126	0.47
124_F	174_P	1.119	0.47
22_S	165_I	1.118	0.47
262_G	266_S	1.115	0.46
129_K	168_N	1.110	0.46
261_Y	311_V	1.098	0.45
50_A	124_F	1.093	0.45
140_T	253_D	1.091	0.45
209_K	247_K	1.089	0.45
53_T	72_P	1.089	0.45
277_A	308_Y	1.087	0.45
45_S	99_V	1.084	0.44
148_F	245_E	1.079	0.44
143_E	175_S	1.077	0.44
119_S	303_S	1.076	0.44
6_K	53_T	1.074	0.44
96_G	122_Y	1.072	0.44
13_T	17_A	1.069	0.44
24_C	106_K	1.064	0.43
316_S	321_S	1.063	0.43
88_Q	114_W	1.059	0.43
91_L	174_P	1.057	0.43
273_K	332_M	1.055	0.43
239_L	309_D	1.049	0.42
16_L	42_E	1.048	0.42
323_E	328_V	1.046	0.42
50_A	125_E	1.040	0.42
328_V	331_S	1.039	0.42
119_S	122_Y	1.032	0.41
101_T	115_P	1.030	0.41
88_Q	263_G	1.029	0.41
105_N	169_K	1.028	0.41
62_V	182_T	1.025	0.41
167_F	179_V	1.025	0.41
115_P	154_Y	1.020	0.41
11_L	232_K	1.019	0.41
23_A	238_P	1.012	0.40
19_L	253_D	1.008	0.40
88_Q	96_G	1.004	0.40
35_G	238_P	1.003	0.40
80_E	87_N	0.999	0.39
168_N	305_S	0.999	0.39
20_I	257_I	0.997	0.39
292_L	332_M	0.996	0.39
237_L	261_Y	0.994	0.39
128_V	293_G	0.990	0.39
197_F	315_L	0.989	0.39
17_A	193_S	0.988	0.39
155_Q	261_Y	0.987	0.39
19_L	323_E	0.986	0.39
7_S	244_L	0.985	0.39
198_N	203_K	0.977	0.38
91_L	154_Y	0.977	0.38
307_T	312_D	0.975	0.38
101_T	110_F	0.973	0.38
114_W	163_Q	0.966	0.37
139_F	167_F	0.963	0.37
36_L	128_V	0.957	0.37
106_K	120_Q	0.957	0.37
153_N	236_E	0.957	0.37
116_N	133_N	0.955	0.37
234_P	329_A	0.955	0.37
241_V	303_S	0.953	0.37
180_M	186_V	0.953	0.37
168_N	199_K	0.953	0.37
83_K	326_V	0.952	0.37
77_V	115_P	0.949	0.36
70_K	129_K	0.944	0.36
91_L	190_V	0.941	0.36
72_P	159_M	0.940	0.36
267_F	270_I	0.940	0.36
97_V	115_P	0.937	0.36
231_V	257_I	0.926	0.35
48_A	197_F	0.923	0.35
305_S	312_D	0.918	0.35
76_R	211_N	0.915	0.35
100_L	208_E	0.915	0.35
63_Y	92_R	0.912	0.34
108_F	236_E	0.909	0.34
196_E	199_K	0.908	0.34
17_A	20_I	0.902	0.34
219_V	222_S	0.901	0.34
246_E	261_Y	0.898	0.34
144_K	203_K	0.895	0.33
96_G	106_K	0.893	0.33
147_V	293_G	0.893	0.33
322_K	326_V	0.891	0.33
269_L	315_L	0.888	0.33
56_T	98_F	0.885	0.33
112_S	115_P	0.884	0.33
191_E	327_T	0.883	0.33
30_Q	225_P	0.883	0.33
288_E	322_K	0.881	0.33
102_P	181_D	0.880	0.33
58_S	197_F	0.878	0.33
44_T	290_V	0.874	0.32
301_D	316_S	0.873	0.32
214_L	220_A	0.873	0.32
71_K	205_S	0.870	0.32
127_L	163_Q	0.867	0.32
158_K	161_P	0.866	0.32
181_D	317_S	0.866	0.32
188_V	195_F	0.865	0.32
108_F	263_G	0.864	0.32
56_T	238_P	0.864	0.32
36_L	139_F	0.861	0.32
106_K	163_Q	0.859	0.31
30_Q	44_T	0.858	0.31
133_N	239_L	0.853	0.31
13_T	16_L	0.842	0.31
60_P	72_P	0.842	0.31
59_E	288_E	0.834	0.30
33_V	208_E	0.833	0.30
94_E	98_F	0.832	0.30
95_N	187_M	0.831	0.30
51_K	82_P	0.828	0.30
238_P	331_S	0.825	0.30
175_S	195_F	0.823	0.30
66_E	209_K	0.822	0.30
255_K	259_M	0.821	0.29
119_S	306_W	0.818	0.29
145_K	168_N	0.818	0.29
10_L	224_K	0.817	0.29
86_Q	103_S	0.816	0.29
198_N	239_L	0.809	0.29
5_R	198_N	0.806	0.29
31_D	136_D	0.801	0.28
97_V	112_S	0.801	0.28
6_K	235_L	0.793	0.28
15_L	286_N	0.791	0.28
32_I	50_A	0.791	0.28
254_G	289_P	0.789	0.28
46_Y	63_Y	0.789	0.28
34_A	204_E	0.787	0.28
147_V	256_R	0.781	0.27
13_T	236_E	0.781	0.27
52_M	114_W	0.780	0.27
52_M	120_Q	0.780	0.27
7_S	257_I	0.778	0.27
5_R	232_K	0.777	0.27
66_E	274_A	0.776	0.27
213_T	261_Y	0.776	0.27
103_S	150_T	0.776	0.27
306_W	329_A	0.776	0.27
49_K	164_E	0.771	0.27
5_R	277_A	0.769	0.27
53_T	95_N	0.767	0.27
125_E	180_M	0.766	0.27
144_K	242_K	0.762	0.27
131_V	165_I	0.757	0.26
73_S	243_L	0.755	0.26
78_Y	195_F	0.751	0.26
244_L	275_Q	0.751	0.26
82_P	327_T	0.750	0.26
49_K	193_S	0.746	0.26
138_V	222_S	0.746	0.26
13_T	37_D	0.746	0.26
43_Y	56_T	0.742	0.26
57_G	297_G	0.742	0.26
245_E	261_Y	0.740	0.26
40_A	128_V	0.740	0.26
249_I	309_D	0.740	0.26
150_T	153_N	0.737	0.25
77_V	265_K	0.737	0.25
199_K	257_I	0.737	0.25
256_R	260_T	0.736	0.25
202_D	307_T	0.731	0.25
91_L	107_S	0.729	0.25
128_V	245_E	0.727	0.25
258_I	261_Y	0.727	0.25
68_W	273_K	0.725	0.25
91_L	208_E	0.725	0.25
129_K	290_V	0.723	0.25
113_D	307_T	0.722	0.25
77_V	233_T	0.721	0.25
44_T	304_L	0.718	0.24
27_K	280_S	0.716	0.24
295_T	329_A	0.715	0.24
196_E	323_E	0.713	0.24
32_I	143_E	0.708	0.24
160_L	270_I	0.706	0.24
168_N	173_S	0.703	0.24
32_I	279_A	0.703	0.24
149_E	162_T	0.698	0.24
139_F	320_L	0.696	0.23
22_S	242_K	0.694	0.23
158_K	244_L	0.693	0.23
97_V	111_Q	0.692	0.23
253_D	301_D	0.691	0.23
42_E	49_K	0.690	0.23
85_D	216_Q	0.690	0.23
25_G	52_M	0.688	0.23
35_G	299_L	0.688	0.23
67_I	141_A	0.686	0.23
92_R	261_Y	0.685	0.23
76_R	205_S	0.684	0.23
81_N	208_E	0.684	0.23
102_P	114_W	0.679	0.23
217_M	221_T	0.678	0.23
227_D	277_A	0.676	0.23
93_N	96_G	0.676	0.23
286_N	309_D	0.674	0.23
115_P	130_D	0.672	0.22
291_N	300_S	0.672	0.22
142_K	145_K	0.672	0.22
196_E	269_L	0.670	0.22
31_D	168_N	0.667	0.22
194_S	315_L	0.667	0.22
112_S	163_Q	0.666	0.22
149_E	164_E	0.665	0.22
149_E	202_D	0.665	0.22
14_G	264_E	0.665	0.22
24_C	329_A	0.665	0.22
145_K	294_Y	0.665	0.22
81_N	120_Q	0.662	0.22
237_L	242_K	0.662	0.22
178_K	315_L	0.660	0.22
116_N	255_K	0.657	0.22
13_T	60_P	0.657	0.22
96_G	104_L	0.657	0.22
96_G	102_P	0.657	0.22
10_L	38_E	0.657	0.22
119_S	163_Q	0.654	0.22
24_C	306_W	0.654	0.22
106_K	114_W	0.653	0.22
93_N	127_L	0.653	0.22
20_I	191_E	0.648	0.21
263_G	271_Q	0.644	0.21
15_L	237_L	0.644	0.21
107_S	210_K	0.643	0.21
53_T	149_E	0.643	0.21
76_R	206_F	0.641	0.21
159_M	309_D	0.640	0.21
222_S	247_K	0.639	0.21
312_D	315_L	0.639	0.21
17_A	73_S	0.639	0.21
136_D	167_F	0.638	0.21
64_N	162_T	0.637	0.21
151_K	161_P	0.634	0.21
77_V	110_F	0.633	0.21
22_S	196_E	0.632	0.21
250_S	253_D	0.629	0.21
13_T	38_E	0.628	0.21
254_G	332_M	0.628	0.21
75_Y	79_L	0.627	0.21
92_R	207_D	0.626	0.21
5_R	302_A	0.625	0.20
198_N	206_F	0.622	0.20
102_P	110_F	0.622	0.20
194_S	237_L	0.621	0.20
33_V	149_E	0.620	0.20
70_K	198_N	0.620	0.20
97_V	287_G	0.620	0.20
32_I	172_M	0.618	0.20
12_L	242_K	0.617	0.20
268_T	297_G	0.614	0.20
63_Y	88_Q	0.614	0.20
76_R	247_K	0.613	0.20
174_P	293_G	0.613	0.20
150_T	317_S	0.609	0.20
239_L	327_T	0.608	0.20
75_Y	110_F	0.607	0.20
14_G	18_V	0.605	0.20
11_L	22_S	0.603	0.20
104_L	114_W	0.601	0.20
199_K	248_D	0.598	0.19
120_Q	127_L	0.598	0.19
48_A	192_F	0.597	0.19
48_A	279_A	0.595	0.19
19_L	35_G	0.595	0.19
285_L	318_K	0.593	0.19
26_Q	242_K	0.592	0.19
213_T	219_V	0.590	0.19
221_T	225_P	0.590	0.19
82_P	269_L	0.590	0.19
263_G	272_E	0.590	0.19
144_K	321_S	0.589	0.19
114_W	177_V	0.589	0.19
132_Q	328_V	0.588	0.19
60_P	294_Y	0.588	0.19
203_K	261_Y	0.586	0.19
96_G	123_L	0.584	0.19
195_F	227_D	0.582	0.19
73_S	305_S	0.580	0.19
158_K	299_L	0.579	0.19
88_Q	101_T	0.576	0.19
46_Y	75_Y	0.574	0.19
209_K	328_V	0.574	0.19
127_L	134_D	0.573	0.18
97_V	154_Y	0.573	0.18
285_L	305_S	0.573	0.18
124_F	207_D	0.570	0.18
219_V	299_L	0.568	0.18
25_G	106_K	0.567	0.18
175_S	203_K	0.566	0.18
76_R	180_M	0.565	0.18
52_M	309_D	0.565	0.18
59_E	326_V	0.565	0.18
208_E	211_N	0.564	0.18
99_V	104_L	0.564	0.18
54_I	294_Y	0.564	0.18
96_G	110_F	0.563	0.18
29_Q	167_F	0.562	0.18
22_S	49_K	0.561	0.18
150_T	165_I	0.560	0.18
152_T	161_P	0.560	0.18
58_S	196_E	0.559	0.18
11_L	235_L	0.559	0.18
244_L	264_E	0.557	0.18
216_Q	225_P	0.557	0.18
162_T	184_R	0.555	0.18
11_L	231_V	0.554	0.18
94_E	261_Y	0.552	0.18
275_Q	288_E	0.551	0.18
74_L	263_G	0.551	0.18
38_E	157_N	0.549	0.18
35_G	78_Y	0.547	0.18
183_D	198_N	0.545	0.17
193_S	261_Y	0.545	0.17
231_V	259_M	0.544	0.17
94_E	325_M	0.543	0.17
79_L	117_N	0.540	0.17
31_D	95_N	0.540	0.17
18_V	188_V	0.539	0.17
35_G	137_A	0.539	0.17
18_V	213_T	0.538	0.17
52_M	94_E	0.538	0.17
174_P	310_G	0.538	0.17
257_I	260_T	0.534	0.17
38_E	273_K	0.532	0.17
118_S	272_E	0.531	0.17
7_S	276_I	0.530	0.17
43_Y	71_K	0.530	0.17
111_Q	120_Q	0.529	0.17
18_V	327_T	0.528	0.17
107_S	254_G	0.527	0.17
70_K	95_N	0.526	0.17
320_L	324_E	0.525	0.17
101_T	154_Y	0.525	0.17
5_R	191_E	0.524	0.17
101_T	122_Y	0.524	0.17
47_K	68_W	0.523	0.17
215_S	219_V	0.521	0.17
34_A	175_S	0.520	0.17
162_T	325_M	0.520	0.17
123_L	293_G	0.520	0.17
54_I	155_Q	0.518	0.17
245_E	274_A	0.518	0.17
108_F	157_N	0.518	0.17
22_S	290_V	0.517	0.16
141_A	200_Q	0.517	0.16
29_Q	164_E	0.516	0.16
167_F	172_M	0.515	0.16
193_S	286_N	0.515	0.16
7_S	326_V	0.514	0.16
293_G	306_W	0.513	0.16
63_Y	170_K	0.512	0.16
252_E	317_S	0.511	0.16
104_L	110_F	0.509	0.16
22_S	188_V	0.509	0.16
23_A	203_K	0.507	0.16
14_G	171_D	0.506	0.16
59_E	224_K	0.505	0.16
221_T	244_L	0.502	0.16
37_D	41_K	0.502	0.16
50_A	96_G	0.500	0.16

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3m4wA	2	0.8195	100	0.661	Contact Map
2yzyA	1	0.4645	99.9	0.737	Contact Map
3buuA	1	0.5503	99.9	0.741	Contact Map
4z48A	1	0.5592	99.9	0.748	Contact Map
4mxtA	2	0.5355	99.9	0.748	Contact Map
2w7qA	1	0.5562	99.9	0.751	Contact Map
3bk5A	1	0.6302	99.8	0.764	Contact Map
1iwlA	1	0.5207	99.8	0.772	Contact Map
4qa8A	1	0.5178	97.5	0.909	Contact Map
3mh9C	1	0.5266	97	0.917	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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