YDBT - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YDBT - UPF0699 transmembrane protein YdbT

UniProt:	P96616	Sequences: MMSEPKRLHPVAVILNLCHTIIQTIKNIILPFFFVYIVNSNHTVRFYGAIALGVLFIWLVAASIIKWRRFTYRIEDDEFRIEEGLFVTKKRYISIDRIQTMNTSAGLVQQIFKLVKLQIETAGGGKEAEAVLSAISVEEAERIKEAVFKKKAQRRENELDEERLEAEEELDPSVEVQEHYRMNAKELLMAASTSGGIGVIISAVFALISQLDEVLPMDWLFDKFSFLQHASIGIYAVLIFIGLFIAWIFSIAGMMFRYANFQIIKKEQELVISRGIIEKHQVTIPLRKIQAIKIKENIIRQLFGFVTVSIVSAGGGDREKEEGALTILFPMIHKKKLPHMLRTFTPEYTLEENCRRLPRRALKRYLFRSVIFSLFLIIPLCIFFQPWGYLSVILLPIELLFGYLAYKEAAWTINGDRLQLTSRFIGRTTAIVLKKRMQVCKFSQSYFQKKGRLYTISTSVKSSSHMEELTVRDVGEEDAAFILKWYSYEKADG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	493 (465)
Sequences:	996 (856)
Seq/√Len:	39.7

BACSU - YDBT
HALSA - Q9HQ31

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
139_E	142_R	7.275	1.00
368_R	473_D	6.474	1.00
65_I	85_L	5.301	1.00
69_R	88_T	4.342	1.00
135_I	139_E	4.306	1.00
475_G	478_D	3.950	1.00
99_Q	290_Q	3.874	1.00
6_K	139_E	3.669	1.00
256_F	277_I	3.578	1.00
296_E	427_R	3.521	1.00
193_T	300_R	3.332	1.00
103_T	115_V	3.295	1.00
81_I	130_A	3.279	1.00
79_F	119_I	3.258	1.00
448_Q	473_D	3.201	1.00
82_E	90_K	3.157	1.00
115_V	137_V	2.960	1.00
265_K	286_L	2.948	1.00
186_E	336_K	2.887	1.00
294_I	306_V	2.869	1.00
181_R	262_Q	2.801	1.00
47_Y	51_A	2.711	1.00
378_I	382_I	2.710	1.00
455_T	473_D	2.560	1.00
362_L	366_L	2.550	1.00
263_I	272_I	2.477	1.00
301_Q	423_R	2.472	1.00
375_F	379_P	2.427	1.00
203_A	397_I	2.420	1.00
232_I	236_A	2.408	1.00
106_G	109_Q	2.371	1.00
454_Y	479_A	2.311	1.00
62_A	85_L	2.293	1.00
301_Q	427_R	2.267	1.00
121_T	187_L	2.251	1.00
362_L	403_Y	2.236	1.00
123_G	438_Q	2.207	0.99
119_I	147_V	2.090	0.99
122_A	438_Q	2.073	0.99
448_Q	455_T	2.068	0.99
418_L	458_T	2.063	0.99
72_Y	139_E	2.059	0.99
404_L	424_F	2.056	0.99
93_I	130_A	2.050	0.99
5_P	73_R	2.019	0.99
313_A	438_Q	2.016	0.99
95_I	147_V	2.003	0.99
273_S	279_K	1.967	0.99
84_G	330_P	1.965	0.99
392_V	396_P	1.955	0.99
364_R	473_D	1.955	0.99
75_E	80_R	1.937	0.99
26_K	30_L	1.929	0.99
452_R	476_E	1.923	0.99
78_E	92_Y	1.910	0.98
366_L	402_G	1.909	0.98
364_R	461_K	1.896	0.98
83_E	89_K	1.870	0.98
70_F	81_I	1.864	0.98
290_Q	438_Q	1.856	0.98
109_Q	134_A	1.829	0.98
296_E	429_T	1.811	0.98
329_F	340_M	1.781	0.98
296_E	334_K	1.775	0.97
203_A	207_L	1.774	0.97
478_D	481_F	1.749	0.97
99_Q	122_A	1.734	0.97
141_E	144_K	1.717	0.97
421_T	427_R	1.709	0.97
271_V	283_T	1.649	0.96
293_K	428_T	1.620	0.96
245_I	375_F	1.613	0.96
358_P	429_T	1.610	0.95
452_R	481_F	1.581	0.95
99_Q	120_E	1.557	0.95
291_A	311_V	1.556	0.95
91_R	261_F	1.551	0.94
108_V	111_I	1.541	0.94
99_Q	121_T	1.538	0.94
24_T	27_N	1.535	0.94
363_K	367_F	1.532	0.94
268_Q	287_R	1.502	0.93
99_Q	436_R	1.501	0.93
191_A	254_M	1.493	0.93
5_P	82_E	1.491	0.93
421_T	429_T	1.488	0.93
293_K	430_A	1.483	0.93
156_E	356_R	1.483	0.93
66_K	69_R	1.482	0.93
69_R	85_L	1.477	0.93
205_F	213_E	1.465	0.93
46_F	50_I	1.461	0.92
206_A	210_Q	1.458	0.92
290_Q	461_K	1.457	0.92
474_V	479_A	1.435	0.92
365_Y	409_A	1.430	0.92
188_L	191_A	1.428	0.92
91_R	139_E	1.418	0.91
379_P	382_I	1.407	0.91
50_I	236_A	1.407	0.91
122_A	129_E	1.401	0.91
122_A	290_Q	1.388	0.90
22_I	27_N	1.387	0.90
107_L	277_I	1.382	0.90
358_P	453_L	1.382	0.90
364_R	453_L	1.381	0.90
290_Q	436_R	1.376	0.90
103_T	117_L	1.355	0.89
297_N	331_M	1.354	0.89
101_M	140_A	1.351	0.89
360_R	453_L	1.350	0.89
93_I	129_E	1.349	0.89
294_I	337_L	1.345	0.89
99_Q	438_Q	1.339	0.89
157_N	204_V	1.338	0.89
12_A	17_L	1.336	0.89
50_I	54_V	1.325	0.88
144_K	148_F	1.319	0.88
94_S	110_Q	1.317	0.88
185_K	460_V	1.313	0.88
295_K	309_S	1.302	0.87
135_I	142_R	1.300	0.87
70_F	99_Q	1.298	0.87
8_L	70_F	1.295	0.87
358_P	475_G	1.294	0.87
54_V	58_W	1.291	0.87
72_Y	140_A	1.288	0.87
22_I	26_K	1.284	0.86
105_A	115_V	1.282	0.86
187_L	344_F	1.281	0.86
262_Q	273_S	1.280	0.86
149_K	237_V	1.273	0.86
314_G	448_Q	1.273	0.86
154_R	173_S	1.268	0.86
99_Q	357_L	1.259	0.85
235_Y	302_L	1.253	0.85
122_A	313_A	1.249	0.85
454_Y	476_E	1.241	0.85
420_L	471_V	1.233	0.84
190_A	254_M	1.228	0.84
118_Q	131_V	1.224	0.84
401_F	425_I	1.223	0.84
71_T	253_G	1.222	0.84
8_L	132_L	1.200	0.82
263_I	364_R	1.200	0.82
305_F	332_I	1.198	0.82
375_F	432_V	1.192	0.82
238_L	392_V	1.190	0.82
292_I	308_V	1.184	0.82
26_K	331_M	1.182	0.81
127_E	239_I	1.177	0.81
375_F	413_I	1.176	0.81
245_I	277_I	1.173	0.81
145_E	239_I	1.167	0.81
190_A	300_R	1.166	0.81
261_F	330_P	1.163	0.80
357_L	411_W	1.163	0.80
109_Q	123_G	1.157	0.80
270_L	329_F	1.151	0.80
246_A	350_L	1.151	0.80
358_P	361_A	1.151	0.80
197_I	252_A	1.151	0.80
178_E	303_F	1.150	0.80
478_D	482_I	1.149	0.80
33_F	237_V	1.137	0.79
196_G	254_M	1.134	0.79
81_I	93_I	1.131	0.79
58_W	455_T	1.131	0.79
410_A	421_T	1.130	0.78
86_F	304_G	1.127	0.78
362_L	406_Y	1.123	0.78
460_V	479_A	1.116	0.78
366_L	370_V	1.112	0.77
5_P	9_H	1.111	0.77
9_H	346_P	1.109	0.77
103_T	140_A	1.105	0.77
248_I	431_I	1.103	0.77
306_V	337_L	1.095	0.76
190_A	331_M	1.091	0.76
336_K	339_H	1.090	0.76
114_L	445_S	1.088	0.76
274_R	280_H	1.079	0.75
222_D	225_S	1.079	0.75
223_K	379_P	1.074	0.75
399_L	437_M	1.073	0.75
46_F	51_A	1.073	0.75
30_L	33_F	1.066	0.74
284_I	313_A	1.062	0.74
299_I	303_F	1.062	0.74
204_V	242_G	1.056	0.74
70_F	122_A	1.056	0.74
102_N	280_H	1.054	0.73
63_S	66_K	1.053	0.73
46_F	49_A	1.051	0.73
70_F	313_A	1.050	0.73
25_I	350_L	1.046	0.73
6_K	72_Y	1.041	0.72
27_N	52_L	1.041	0.72
142_R	146_A	1.037	0.72
82_E	200_I	1.027	0.71
402_G	436_R	1.026	0.71
232_I	241_I	1.023	0.71
54_V	160_D	1.018	0.71
80_R	90_K	1.011	0.70
123_G	134_A	1.006	0.70
107_L	149_K	1.004	0.70
114_L	190_A	1.004	0.70
129_E	438_Q	0.999	0.69
57_I	61_A	0.998	0.69
25_I	240_F	0.996	0.69
227_L	319_E	0.994	0.69
74_I	406_Y	0.990	0.69
307_T	471_V	0.990	0.69
274_R	278_E	0.990	0.69
192_S	462_S	0.982	0.68
190_A	261_F	0.982	0.68
33_F	36_Y	0.979	0.68
5_P	80_R	0.978	0.68
18_C	36_Y	0.971	0.67
21_I	374_L	0.970	0.67
272_I	328_L	0.969	0.67
70_F	120_E	0.966	0.67
252_A	457_S	0.965	0.67
53_G	172_P	0.964	0.67
420_L	469_L	0.962	0.66
201_I	259_A	0.960	0.66
72_Y	91_R	0.959	0.66
122_A	461_K	0.955	0.66
156_E	237_V	0.951	0.65
242_G	403_Y	0.951	0.65
204_V	403_Y	0.951	0.65
221_F	224_F	0.950	0.65
157_N	335_K	0.948	0.65
185_K	251_I	0.948	0.65
102_N	315_G	0.947	0.65
61_A	376_L	0.945	0.65
8_L	98_I	0.943	0.65
72_Y	330_P	0.942	0.65
76_D	185_K	0.940	0.65
186_E	290_Q	0.940	0.65
39_N	437_M	0.938	0.64
99_Q	288_K	0.936	0.64
314_G	473_D	0.936	0.64
53_G	484_K	0.933	0.64
269_E	283_T	0.932	0.64
266_K	271_V	0.932	0.64
423_R	486_Y	0.930	0.64
289_I	483_L	0.930	0.64
298_I	404_L	0.929	0.64
29_I	172_P	0.928	0.64
235_Y	239_I	0.924	0.63
148_F	440_C	0.923	0.63
350_L	375_F	0.916	0.62
122_A	289_I	0.914	0.62
138_E	308_V	0.913	0.62
267_E	286_L	0.912	0.62
120_E	123_G	0.912	0.62
49_A	53_G	0.909	0.62
440_C	486_Y	0.909	0.62
233_G	237_V	0.902	0.61
76_D	452_R	0.902	0.61
272_I	460_V	0.901	0.61
337_L	375_F	0.901	0.61
195_G	300_R	0.899	0.61
130_A	311_V	0.897	0.61
12_A	26_K	0.896	0.61
155_R	386_P	0.896	0.61
289_I	310_I	0.895	0.61
306_V	334_K	0.894	0.61
136_S	391_S	0.893	0.61
187_L	255_M	0.892	0.60
248_I	252_A	0.892	0.60
234_I	240_F	0.891	0.60
153_Q	156_E	0.891	0.60
67_W	324_A	0.888	0.60
300_R	303_F	0.888	0.60
93_I	134_A	0.887	0.60
80_R	91_R	0.883	0.60
155_R	476_E	0.881	0.59
19_H	23_Q	0.879	0.59
136_S	193_T	0.878	0.59
7_R	187_L	0.877	0.59
207_L	378_I	0.871	0.59
157_N	379_P	0.870	0.58
455_T	472_R	0.870	0.58
199_V	254_M	0.869	0.58
81_I	261_F	0.868	0.58
213_E	252_A	0.867	0.58
225_S	239_I	0.865	0.58
8_L	263_I	0.865	0.58
18_C	262_Q	0.861	0.58
72_Y	132_L	0.860	0.58
205_F	212_D	0.859	0.58
259_A	276_I	0.857	0.57
382_I	396_P	0.855	0.57
136_S	308_V	0.854	0.57
225_S	230_A	0.852	0.57
186_E	305_F	0.851	0.57
110_Q	314_G	0.850	0.57
252_A	294_I	0.849	0.57
100_T	120_E	0.848	0.57
46_F	248_I	0.846	0.56
58_W	392_V	0.845	0.56
247_W	423_R	0.845	0.56
67_W	92_Y	0.844	0.56
143_I	279_K	0.843	0.56
297_N	301_Q	0.841	0.56
31_P	36_Y	0.841	0.56
121_T	196_G	0.840	0.56
450_K	453_L	0.840	0.56
266_K	418_L	0.839	0.56
18_C	242_G	0.838	0.56
99_Q	461_K	0.838	0.56
140_A	406_Y	0.836	0.55
6_K	343_T	0.834	0.55
228_Q	437_M	0.834	0.55
186_E	411_W	0.828	0.55
260_N	274_R	0.822	0.54
109_Q	114_L	0.822	0.54
53_G	205_F	0.821	0.54
85_L	302_L	0.821	0.54
367_F	378_I	0.820	0.54
207_L	211_L	0.820	0.54
76_D	375_F	0.819	0.54
242_G	366_L	0.819	0.54
106_G	331_M	0.818	0.54
258_Y	327_I	0.815	0.54
305_F	333_H	0.814	0.53
189_M	333_H	0.814	0.53
187_L	258_Y	0.813	0.53
92_Y	271_V	0.813	0.53
117_L	208_I	0.811	0.53
145_E	231_S	0.810	0.53
369_S	402_G	0.810	0.53
74_I	239_I	0.810	0.53
474_V	481_F	0.809	0.53
370_V	398_E	0.809	0.53
98_I	143_I	0.808	0.53
253_G	256_F	0.804	0.53
420_L	450_K	0.803	0.52
98_I	382_I	0.803	0.52
204_V	246_A	0.801	0.52
67_W	402_G	0.801	0.52
261_F	284_I	0.800	0.52
200_I	245_I	0.800	0.52
387_W	393_I	0.799	0.52
241_I	245_I	0.799	0.52
98_I	290_Q	0.798	0.52
301_Q	365_Y	0.796	0.52
83_E	92_Y	0.795	0.52
396_P	400_L	0.792	0.51
236_A	419_Q	0.791	0.51
100_T	311_V	0.790	0.51
437_M	458_T	0.789	0.51
26_K	29_I	0.788	0.51
205_F	209_S	0.785	0.51
108_V	296_E	0.784	0.51
77_D	142_R	0.783	0.51
52_L	61_A	0.781	0.50
180_Y	290_Q	0.775	0.50
296_E	433_L	0.774	0.50
297_N	300_R	0.774	0.50
72_Y	306_V	0.772	0.50
90_K	272_I	0.771	0.50
123_G	461_K	0.770	0.49
25_I	377_I	0.767	0.49
47_Y	77_D	0.765	0.49
263_I	329_F	0.764	0.49
72_Y	314_G	0.762	0.49
192_S	201_I	0.762	0.49
244_F	374_L	0.762	0.49
430_A	469_L	0.761	0.49
118_Q	447_F	0.759	0.48
305_F	337_L	0.752	0.48
50_I	425_I	0.751	0.48
14_I	24_T	0.751	0.48
13_V	62_A	0.747	0.47
47_Y	393_I	0.746	0.47
215_L	220_L	0.744	0.47
482_I	486_Y	0.743	0.47
10_P	351_E	0.743	0.47
447_F	450_K	0.741	0.47
354_C	410_A	0.740	0.47
50_I	375_F	0.739	0.47
123_G	365_Y	0.738	0.47
368_R	448_Q	0.737	0.46
307_T	331_M	0.735	0.46
127_E	203_A	0.735	0.46
339_H	343_T	0.732	0.46
284_I	444_Q	0.732	0.46
21_I	393_I	0.731	0.46
376_L	477_E	0.730	0.46
388_G	420_L	0.730	0.46
241_I	445_S	0.729	0.46
5_P	11_V	0.728	0.46
48_G	51_A	0.726	0.45
228_Q	471_V	0.726	0.45
236_A	240_F	0.725	0.45
219_W	241_I	0.723	0.45
152_A	176_V	0.723	0.45
105_A	137_V	0.722	0.45
434_K	485_W	0.722	0.45
107_L	481_F	0.719	0.45
32_F	85_L	0.719	0.45
263_I	270_L	0.717	0.45
157_N	185_K	0.717	0.45
43_T	418_L	0.715	0.44
273_S	278_E	0.715	0.44
418_L	474_V	0.714	0.44
21_I	27_N	0.714	0.44
65_I	69_R	0.713	0.44
65_I	245_I	0.711	0.44
443_S	457_S	0.711	0.44
114_L	134_A	0.709	0.44
267_E	299_I	0.709	0.44
27_N	31_P	0.706	0.44
191_A	305_F	0.706	0.44
294_I	475_G	0.706	0.44
182_M	263_I	0.703	0.43
91_R	358_P	0.701	0.43
112_F	479_A	0.700	0.43
194_S	312_S	0.698	0.43
203_A	394_L	0.697	0.43
296_E	306_V	0.694	0.43
319_E	443_S	0.694	0.43
263_I	409_A	0.694	0.43
61_A	248_I	0.692	0.42
65_I	86_F	0.691	0.42
314_G	368_R	0.691	0.42
136_S	139_E	0.691	0.42
335_K	481_F	0.691	0.42
111_I	402_G	0.690	0.42
190_A	312_S	0.690	0.42
72_Y	469_L	0.690	0.42
54_V	236_A	0.690	0.42
178_E	262_Q	0.687	0.42
156_E	397_I	0.686	0.42
253_G	279_K	0.685	0.42
284_I	312_S	0.684	0.42
196_G	200_I	0.684	0.42
35_V	277_I	0.683	0.42
124_G	129_E	0.682	0.41
271_V	461_K	0.681	0.41
21_I	32_F	0.681	0.41
30_L	88_T	0.679	0.41
100_T	282_V	0.679	0.41
237_V	287_R	0.678	0.41
21_I	26_K	0.677	0.41
116_K	133_S	0.675	0.41
208_I	443_S	0.674	0.41
9_H	22_I	0.674	0.41
157_N	225_S	0.673	0.41
89_K	227_L	0.673	0.41
75_E	393_I	0.672	0.41
195_G	290_Q	0.672	0.41
54_V	214_V	0.671	0.41
85_L	401_F	0.671	0.41
207_L	395_L	0.669	0.40
57_I	396_P	0.668	0.40
103_T	278_E	0.667	0.40
120_E	313_A	0.665	0.40
7_R	67_W	0.665	0.40
185_K	356_R	0.664	0.40
143_I	296_E	0.664	0.40
151_K	286_L	0.663	0.40
14_I	347_E	0.663	0.40
308_V	313_A	0.662	0.40
109_Q	190_A	0.661	0.40
259_A	277_I	0.660	0.40
22_I	31_P	0.660	0.40
364_R	406_Y	0.660	0.40
67_W	122_A	0.659	0.39
220_L	396_P	0.658	0.39
341_L	437_M	0.657	0.39
30_L	34_F	0.656	0.39
128_A	139_E	0.655	0.39
360_R	452_R	0.654	0.39
195_G	198_G	0.654	0.39
371_I	375_F	0.653	0.39
251_I	457_S	0.652	0.39
96_D	259_A	0.651	0.39
10_P	13_V	0.650	0.39
442_F	480_A	0.650	0.39
86_F	384_F	0.650	0.39
135_I	336_K	0.650	0.39
70_F	130_A	0.648	0.38
79_F	294_I	0.647	0.38
72_Y	114_L	0.646	0.38
14_I	145_E	0.646	0.38
24_T	60_V	0.646	0.38
300_R	331_M	0.646	0.38
72_Y	97_R	0.643	0.38
47_Y	183_N	0.643	0.38
344_F	465_H	0.643	0.38
175_E	236_A	0.642	0.38
442_F	476_E	0.641	0.38
5_P	71_T	0.640	0.38
291_A	459_S	0.640	0.38
252_A	455_T	0.640	0.38
242_G	303_F	0.640	0.38
48_G	52_L	0.636	0.37
396_P	417_R	0.636	0.37
153_Q	222_D	0.636	0.37
449_K	455_T	0.635	0.37
29_I	112_F	0.635	0.37
456_I	482_I	0.634	0.37
296_E	361_A	0.634	0.37
119_I	483_L	0.634	0.37
111_I	147_V	0.633	0.37
99_Q	411_W	0.630	0.37
52_L	222_D	0.630	0.37
139_E	146_A	0.629	0.37
137_V	371_I	0.629	0.37
364_R	368_R	0.628	0.37
70_F	290_Q	0.628	0.37
365_Y	473_D	0.627	0.37
443_S	455_T	0.626	0.37
258_Y	278_E	0.625	0.37
47_Y	58_W	0.625	0.37
43_T	61_A	0.625	0.37
307_T	327_I	0.624	0.36
100_T	300_R	0.623	0.36
205_F	242_G	0.623	0.36
122_A	312_S	0.623	0.36
289_I	465_H	0.623	0.36
254_M	300_R	0.621	0.36
181_R	214_V	0.621	0.36
35_V	38_V	0.621	0.36
295_K	426_G	0.621	0.36
73_R	80_R	0.619	0.36
353_N	484_K	0.619	0.36
69_R	304_G	0.618	0.36
152_A	155_R	0.617	0.36
150_K	484_K	0.615	0.36
109_Q	116_K	0.615	0.36
58_W	61_A	0.615	0.36
202_S	205_F	0.613	0.36
30_L	36_Y	0.612	0.35
301_Q	460_V	0.611	0.35
475_G	479_A	0.611	0.35
203_A	274_R	0.611	0.35
71_T	82_E	0.610	0.35
98_I	355_R	0.610	0.35
201_I	211_L	0.609	0.35
123_G	486_Y	0.606	0.35
244_F	455_T	0.606	0.35
366_L	391_S	0.605	0.35
81_I	193_T	0.604	0.35
64_I	226_F	0.603	0.35
55_L	177_Q	0.602	0.35
131_V	284_I	0.602	0.35
159_L	383_F	0.602	0.35
271_V	296_E	0.601	0.35
101_M	148_F	0.600	0.34
15_L	135_I	0.599	0.34
203_A	452_R	0.599	0.34
250_S	328_L	0.598	0.34
21_I	31_P	0.598	0.34
71_T	360_R	0.597	0.34
143_I	399_L	0.597	0.34
119_I	269_E	0.597	0.34
35_V	51_A	0.595	0.34
240_F	457_S	0.595	0.34
193_T	313_A	0.593	0.34
298_I	426_G	0.593	0.34
381_C	428_T	0.591	0.34
101_M	263_I	0.590	0.34
104_S	116_K	0.590	0.34
294_I	474_V	0.590	0.34
15_L	108_V	0.590	0.34
361_A	453_L	0.589	0.34
177_Q	343_T	0.589	0.34
302_L	430_A	0.588	0.33
370_V	399_L	0.586	0.33
192_S	207_L	0.585	0.33
33_F	45_R	0.585	0.33
21_I	476_E	0.585	0.33
76_D	335_K	0.583	0.33
99_Q	409_A	0.583	0.33
14_I	338_P	0.582	0.33
386_P	392_V	0.582	0.33
372_F	376_L	0.582	0.33
375_F	453_L	0.580	0.33
116_K	131_V	0.580	0.33
364_R	447_F	0.579	0.33
172_P	240_F	0.578	0.33
346_P	485_W	0.578	0.33
403_Y	406_Y	0.578	0.33
7_R	71_T	0.577	0.33
147_V	259_A	0.577	0.33
134_A	280_H	0.576	0.32
195_G	247_W	0.576	0.32
18_C	25_I	0.575	0.32
134_A	328_L	0.575	0.32
51_A	474_V	0.575	0.32
117_L	278_E	0.570	0.32
31_P	35_V	0.569	0.32
345_T	482_I	0.569	0.32
448_Q	462_S	0.568	0.32
159_L	241_I	0.567	0.32
59_L	206_A	0.564	0.32
361_A	473_D	0.562	0.31
13_V	17_L	0.562	0.31
218_D	241_I	0.561	0.31
157_N	378_I	0.559	0.31
313_A	439_V	0.559	0.31
56_F	416_D	0.558	0.31
74_I	344_F	0.558	0.31
118_Q	202_S	0.558	0.31
53_G	201_I	0.557	0.31
432_V	458_T	0.557	0.31
104_S	236_A	0.556	0.31
32_F	157_N	0.555	0.31
100_T	110_Q	0.555	0.31
24_T	299_I	0.553	0.31
374_L	378_I	0.552	0.31
52_L	55_L	0.551	0.31
293_K	439_V	0.551	0.31
107_L	278_E	0.550	0.30
47_Y	50_I	0.550	0.30
99_Q	433_L	0.548	0.30
120_E	438_Q	0.548	0.30
312_S	409_A	0.548	0.30
74_I	474_V	0.547	0.30
109_Q	313_A	0.547	0.30
113_K	177_Q	0.545	0.30
114_L	401_F	0.545	0.30
112_F	353_N	0.544	0.30
76_D	210_Q	0.544	0.30
212_D	252_A	0.544	0.30
51_A	128_A	0.543	0.30
261_F	277_I	0.543	0.30
284_I	365_Y	0.543	0.30
14_I	199_V	0.542	0.30
72_Y	99_Q	0.541	0.30
100_T	402_G	0.541	0.30
230_A	236_A	0.541	0.30
236_A	277_I	0.539	0.30
211_L	226_F	0.538	0.30
301_Q	408_E	0.537	0.29
103_T	461_K	0.537	0.29
67_W	129_E	0.537	0.29
14_I	149_K	0.537	0.29
78_E	254_M	0.536	0.29
50_I	235_Y	0.536	0.29
65_I	399_L	0.535	0.29
298_I	302_L	0.535	0.29
51_A	55_L	0.535	0.29
46_F	239_I	0.532	0.29
6_K	240_F	0.531	0.29
108_V	135_I	0.531	0.29
191_A	255_M	0.527	0.29
259_A	269_E	0.527	0.29
147_V	423_R	0.527	0.29
28_I	60_V	0.526	0.29
190_A	296_E	0.525	0.29
149_K	375_F	0.525	0.29
120_E	195_G	0.524	0.28
396_P	413_I	0.524	0.28
360_R	475_G	0.524	0.28
158_E	222_D	0.523	0.28
203_A	206_A	0.523	0.28
143_I	425_I	0.522	0.28
272_I	282_V	0.522	0.28
392_V	440_C	0.521	0.28
173_S	239_I	0.520	0.28
288_K	463_S	0.519	0.28
17_L	21_I	0.518	0.28
415_G	481_F	0.518	0.28
388_G	396_P	0.518	0.28
223_K	437_M	0.517	0.28
401_F	404_L	0.517	0.28
102_N	274_R	0.516	0.28
97_R	122_A	0.514	0.28
180_Y	249_F	0.514	0.28
244_F	371_I	0.514	0.28
10_P	456_I	0.513	0.28
50_I	245_I	0.513	0.28
418_L	471_V	0.513	0.28
143_I	413_I	0.513	0.28
72_Y	84_G	0.512	0.28
18_C	54_V	0.509	0.27
459_S	463_S	0.509	0.27
128_A	486_Y	0.509	0.27
373_S	381_C	0.509	0.27
149_K	378_I	0.508	0.27
243_L	317_D	0.507	0.27
8_L	12_A	0.506	0.27
72_Y	218_D	0.506	0.27
67_W	328_L	0.505	0.27
89_K	434_K	0.505	0.27
135_I	446_Y	0.504	0.27
110_Q	273_S	0.504	0.27
270_L	364_R	0.503	0.27
107_L	352_E	0.502	0.27
144_K	147_V	0.502	0.27
134_A	305_F	0.501	0.27
192_S	247_W	0.500	0.27

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4i0uA	4	0.1278	28.4	0.97	Contact Map
4ev6A	3	0.1318	23.4	0.971	Contact Map
2dzkA	1	0.1014	11.1	0.975	Contact Map
3fssA	1	0.217	10.2	0.975	Contact Map
4f4cA	1	0.6045	6.7	0.977	Contact Map
3c5tB	1	0.0507	6.4	0.977	Contact Map
3hsaA	3	0.211	5.6	0.978	Contact Map
2g7oA	4	0.1379	4.8	0.979	Contact Map
2b4nA	1	0.0669	4.3	0.979	Contact Map
2codA	1	0.2312	3.9	0.98	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0117 seconds.