MURF - BACSU - GREMLIN Contacts

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MURF - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

UniProt:	P96613	Sequences: MIKRTVKNIAEMVKGTLANPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGVAAVLWDRSVPNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQNAYSCQTKTYGTGTHNDYQLQDVSQSEEGTHFTIKGIENTFFIPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEKDRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIESPLS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	457 (395)
Sequences:	17941 (13180)
Seq/√Len:	663.1

ECOLI - MURF MURE MURC MPL MURD
BACSU - MURF MURE MURD MURC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
186_V	291_A	3.463	1.00
253_D	264_T	2.702	1.00
241_Y	287_A	2.700	1.00
412_S	423_A	2.687	1.00
387_R	412_S	2.631	1.00
130_T	308_G	2.558	1.00
357_L	385_I	2.546	1.00
107_R	183_D	2.545	1.00
414_Y	423_A	2.539	1.00
298_A	301_D	2.522	1.00
289_I	302_A	2.488	1.00
423_A	427_N	2.420	1.00
184_A	291_A	2.404	1.00
186_V	287_A	2.390	1.00
318_L	326_S	2.384	1.00
416_E	419_D	2.367	1.00
200_S	203_G	2.358	1.00
387_R	427_N	2.347	1.00
252_Q	266_K	2.329	1.00
127_V	288_A	2.254	1.00
59_Q	63_A	2.238	1.00
127_V	292_G	2.224	1.00
264_T	271_T	2.197	1.00
273_F	307_S	2.187	1.00
130_T	305_G	2.182	1.00
220_V	294_Y	2.178	1.00
249_Y	290_A	2.141	1.00
225_G	247_N	2.138	1.00
205_A	232_N	2.124	1.00
340_K	344_Q	2.100	1.00
354_K	432_D	2.006	1.00
423_A	426_E	1.986	1.00
85_L	88_D	1.976	1.00
274_I	285_A	1.975	1.00
130_T	304_K	1.970	1.00
199_G	203_G	1.967	1.00
396_A	400_E	1.944	1.00
389_F	427_N	1.933	1.00
44_I	69_L	1.899	1.00
133_R	159_E	1.881	1.00
131_Q	301_D	1.879	1.00
183_D	219_G	1.857	1.00
428_A	434_I	1.850	1.00
61_F	81_H	1.821	1.00
110_G	182_P	1.820	1.00
126_A	308_G	1.807	1.00
440_R	445_E	1.793	1.00
212_I	221_L	1.793	1.00
109_I	295_F	1.774	1.00
110_G	165_M	1.765	1.00
356_M	427_N	1.751	1.00
59_Q	62_E	1.750	1.00
124_I	288_A	1.735	1.00
125_H	137_T	1.723	1.00
124_I	291_A	1.713	1.00
262_H	271_T	1.712	1.00
356_M	387_R	1.698	1.00
251_L	286_M	1.688	1.00
267_G	270_N	1.672	1.00
397_F	400_E	1.672	1.00
285_A	306_L	1.671	1.00
354_K	387_R	1.658	1.00
293_A	299_P	1.648	1.00
191_G	337_T	1.642	1.00
389_F	423_A	1.632	1.00
124_I	292_G	1.632	1.00
399_A	413_H	1.631	1.00
125_H	129_G	1.625	1.00
251_L	254_V	1.621	1.00
318_L	328_I	1.618	1.00
58_E	62_E	1.615	1.00
131_Q	297_I	1.594	1.00
203_G	206_E	1.584	1.00
205_A	229_L	1.577	1.00
321_T	326_S	1.576	1.00
263_F	285_A	1.574	1.00
111_V	124_I	1.564	1.00
262_H	273_F	1.560	1.00
250_Q	266_K	1.557	1.00
207_A	210_E	1.542	1.00
279_K	344_Q	1.540	1.00
185_A	211_I	1.539	1.00
243_T	279_K	1.538	1.00
107_R	160_I	1.537	1.00
340_K	379_V	1.526	1.00
249_Y	293_A	1.512	1.00
108_V	180_A	1.491	1.00
184_A	295_F	1.489	1.00
119_T	281_N	1.482	1.00
225_G	240_T	1.481	1.00
47_K	71_D	1.472	1.00
374_K	401_G	1.470	1.00
267_G	293_A	1.469	1.00
167_M	198_L	1.469	1.00
303_A	307_S	1.465	1.00
115_N	335_S	1.463	1.00
390_T	399_A	1.463	1.00
185_A	215_L	1.445	1.00
220_V	237_Q	1.444	1.00
396_A	413_H	1.439	1.00
341_A	344_Q	1.427	1.00
414_Y	419_D	1.420	1.00
344_Q	379_V	1.420	1.00
292_G	302_A	1.419	1.00
394_L	397_F	1.403	1.00
126_A	305_G	1.397	1.00
358_V	391_Y	1.388	1.00
417_K	446_E	1.388	1.00
171_G	207_A	1.388	1.00
128_L	162_V	1.388	1.00
275_P	310_K	1.385	1.00
160_I	295_F	1.383	1.00
109_I	124_I	1.382	1.00
327_I	425_K	1.374	1.00
142_N	146_G	1.371	1.00
220_V	239_K	1.369	1.00
369_E	394_L	1.368	1.00
378_A	383_D	1.363	1.00
184_A	294_Y	1.346	1.00
111_V	121_K	1.346	1.00
85_L	89_T	1.344	1.00
301_D	304_K	1.338	1.00
73_S	85_L	1.332	1.00
344_Q	384_K	1.331	1.00
304_K	308_G	1.330	1.00
325_L	428_A	1.329	1.00
128_L	295_F	1.327	1.00
399_A	403_L	1.315	1.00
51_F	55_S	1.311	1.00
356_M	389_F	1.301	1.00
120_T	188_T	1.299	1.00
215_L	219_G	1.295	1.00
71_D	89_T	1.291	1.00
240_T	248_D	1.290	1.00
171_G	197_D	1.289	1.00
123_M	276_I	1.285	1.00
255_S	262_H	1.283	1.00
279_K	348_S	1.280	1.00
389_F	420_L	1.272	1.00
123_M	309_L	1.263	1.00
95_Q	98_K	1.260	1.00
265_I	289_I	1.259	1.00
184_A	222_I	1.259	1.00
292_G	297_I	1.259	1.00
223_Y	238_T	1.257	1.00
419_D	422_Q	1.250	1.00
118_T	312_T	1.229	1.00
222_I	294_Y	1.228	1.00
190_I	205_A	1.222	1.00
354_K	429_S	1.214	1.00
223_Y	240_T	1.212	1.00
368_L	371_T	1.206	1.00
391_Y	420_L	1.204	1.00
387_R	410_R	1.204	1.00
263_F	282_V	1.202	1.00
304_K	307_S	1.198	1.00
224_I	283_M	1.197	1.00
99_A	103_E	1.195	1.00
151_V	155_P	1.191	1.00
187_I	190_I	1.188	1.00
181_N	219_G	1.188	1.00
91_T	95_Q	1.186	1.00
324_G	430_K	1.182	1.00
114_S	193_S	1.177	1.00
124_I	186_V	1.177	1.00
318_L	321_T	1.174	1.00
422_Q	426_E	1.170	1.00
202_E	206_E	1.162	1.00
209_L	233_A	1.160	1.00
223_Y	230_L	1.153	1.00
260_G	273_F	1.153	1.00
354_K	386_D	1.147	1.00
107_R	159_E	1.147	1.00
252_Q	264_T	1.146	1.00
316_L	328_I	1.140	1.00
377_G	402_A	1.133	1.00
192_E	371_T	1.133	1.00
237_Q	294_Y	1.127	1.00
281_N	284_N	1.127	1.00
192_E	195_M	1.124	1.00
123_M	285_A	1.116	1.00
251_L	282_V	1.112	1.00
134_V	159_E	1.111	1.00
210_E	213_N	1.109	1.00
128_L	297_I	1.108	1.00
249_Y	267_G	1.106	1.00
339_M	437_K	1.104	1.00
313_G	317_E	1.093	1.00
356_M	432_D	1.090	1.00
239_K	290_A	1.090	1.00
47_K	72_R	1.089	1.00
316_L	346_T	1.088	1.00
128_L	160_I	1.087	1.00
300_E	304_K	1.085	1.00
175_L	178_R	1.083	1.00
226_D	283_M	1.081	1.00
418_K	422_Q	1.081	1.00
57_V	68_V	1.080	1.00
438_A	444_L	1.075	1.00
346_T	355_K	1.074	1.00
165_M	177_S	1.073	1.00
372_F	375_E	1.065	1.00
229_L	232_N	1.063	1.00
222_I	290_A	1.059	1.00
183_D	216_K	1.057	1.00
390_T	413_H	1.055	1.00
388_V	402_A	1.047	1.00
53_G	57_V	1.042	1.00
279_K	283_M	1.036	1.00
429_S	432_D	1.033	1.00
225_G	231_Q	1.033	1.00
151_V	154_M	1.033	1.00
375_E	378_A	1.032	1.00
317_E	329_N	1.031	1.00
239_K	294_Y	1.024	1.00
202_E	229_L	1.023	1.00
206_E	210_E	1.019	1.00
187_I	212_I	1.018	1.00
396_A	415_T	1.013	1.00
342_A	435_L	1.007	1.00
397_F	401_G	1.002	1.00
187_I	233_A	1.000	1.00
400_E	404_K	0.997	1.00
334_A	339_M	0.996	1.00
192_E	201_R	0.995	1.00
389_F	414_Y	0.994	1.00
205_A	209_L	0.991	1.00
108_V	161_A	0.987	1.00
127_V	305_G	0.987	1.00
127_V	302_A	0.986	1.00
243_T	283_M	0.985	1.00
419_D	423_A	0.976	1.00
350_E	355_K	0.973	1.00
392_G	415_T	0.972	1.00
340_K	383_D	0.970	1.00
61_F	68_V	0.968	1.00
272_F	303_A	0.962	1.00
115_N	337_T	0.961	1.00
201_R	229_L	0.960	1.00
257_S	262_H	0.960	1.00
94_Q	98_K	0.958	1.00
109_I	291_A	0.956	1.00
297_I	301_D	0.953	1.00
89_T	92_A	0.951	1.00
57_V	61_F	0.947	1.00
188_T	287_A	0.945	1.00
377_G	381_S	0.940	1.00
395_G	413_H	0.939	1.00
126_A	129_G	0.939	1.00
339_M	359_L	0.935	1.00
370_E	397_F	0.930	1.00
43_F	66_A	0.924	1.00
133_R	160_I	0.924	1.00
244_G	279_K	0.921	1.00
263_F	272_F	0.920	1.00
412_S	427_N	0.920	1.00
291_A	295_F	0.919	1.00
131_Q	305_G	0.917	1.00
321_T	325_L	0.913	1.00
367_D	393_K	0.908	1.00
215_L	221_L	0.901	1.00
227_E	283_M	0.900	1.00
184_A	220_V	0.898	1.00
112_T	208_K	0.890	1.00
403_L	411_V	0.889	1.00
350_E	353_G	0.889	1.00
389_F	424_V	0.888	1.00
126_A	309_L	0.886	1.00
203_G	207_A	0.881	1.00
100_Y	104_L	0.880	1.00
328_I	346_T	0.879	1.00
193_S	335_S	0.878	1.00
91_T	175_L	0.875	1.00
224_I	227_E	0.872	1.00
101_L	104_L	0.866	1.00
374_K	378_A	0.865	1.00
107_R	295_F	0.864	1.00
48_G	53_G	0.863	1.00
45_P	70_W	0.859	1.00
98_K	102_Q	0.855	1.00
401_G	404_K	0.854	1.00
125_H	136_K	0.854	1.00
357_L	437_K	0.851	1.00
92_A	96_L	0.851	1.00
242_G	283_M	0.850	1.00
153_A	156_E	0.850	1.00
325_L	431_G	0.850	1.00
74_V	77_P	0.849	1.00
299_P	303_A	0.849	1.00
44_I	89_T	0.848	1.00
400_E	403_L	0.848	1.00
424_V	428_A	0.847	1.00
395_G	398_I	0.846	1.00
84_I	87_D	0.844	1.00
79_E	82_A	0.843	1.00
210_E	214_G	0.843	1.00
316_L	345_L	0.841	1.00
293_A	302_A	0.839	1.00
125_H	135_H	0.836	1.00
181_N	216_K	0.834	1.00
289_I	293_A	0.834	1.00
350_E	433_L	0.833	1.00
209_L	213_N	0.833	1.00
372_F	376_C	0.832	1.00
243_T	251_L	0.831	1.00
168_S	197_D	0.827	1.00
51_F	56_F	0.826	1.00
152_L	156_E	0.826	1.00
415_T	419_D	0.819	1.00
150_T	153_A	0.816	1.00
247_N	250_Q	0.816	1.00
337_T	341_A	0.814	1.00
60_A	65_V	0.813	1.00
131_Q	298_A	0.811	1.00
120_T	287_A	0.809	1.00
126_A	130_T	0.809	1.00
130_T	301_D	0.808	1.00
370_E	374_K	0.806	1.00
371_T	375_E	0.799	1.00
122_D	312_T	0.798	1.00
399_A	411_V	0.796	1.00
228_P	232_N	0.795	1.00
379_V	383_D	0.789	1.00
226_D	242_G	0.787	1.00
120_T	288_A	0.787	1.00
377_G	401_G	0.780	1.00
280_H	341_A	0.779	1.00
90_L	94_Q	0.778	1.00
147_L	150_T	0.778	1.00
396_A	399_A	0.777	1.00
94_Q	175_L	0.777	1.00
133_R	157_N	0.775	1.00
44_I	93_L	0.775	1.00
353_G	432_D	0.773	1.00
170_K	207_A	0.772	1.00
225_G	230_L	0.772	1.00
80_N	83_V	0.770	1.00
152_L	155_P	0.769	1.00
170_K	203_G	0.766	1.00
389_F	412_S	0.766	1.00
326_S	433_L	0.765	1.00
110_G	211_I	0.763	1.00
202_E	205_A	0.761	1.00
420_L	424_V	0.761	1.00
314_M	329_N	0.759	1.00
333_N	437_K	0.759	1.00
414_Y	420_L	0.752	1.00
52_D	72_R	0.750	1.00
402_A	406_F	0.746	1.00
347_E	384_K	0.745	1.00
54_H	57_V	0.743	1.00
167_M	207_A	0.741	1.00
142_N	145_I	0.741	1.00
343_I	357_L	0.739	1.00
240_T	247_N	0.735	1.00
125_H	162_V	0.733	1.00
257_S	260_G	0.728	1.00
92_A	97_A	0.728	1.00
421_L	425_K	0.727	1.00
242_G	245_T	0.725	1.00
155_P	158_T	0.721	1.00
276_I	309_L	0.721	1.00
289_I	299_P	0.720	1.00
256_Q	261_T	0.716	1.00
191_G	201_R	0.716	1.00
265_I	286_M	0.713	1.00
356_M	428_A	0.709	1.00
201_R	205_A	0.709	1.00
443_K	446_E	0.708	1.00
171_G	203_G	0.708	1.00
52_D	55_S	0.706	1.00
190_I	201_R	0.705	1.00
358_V	424_V	0.705	1.00
224_I	241_Y	0.703	1.00
302_A	305_G	0.703	1.00
131_Q	292_G	0.702	1.00
327_I	434_I	0.700	1.00
353_G	433_L	0.699	1.00
92_A	95_Q	0.697	1.00
84_I	88_D	0.695	1.00
321_T	324_G	0.694	1.00
328_I	433_L	0.693	1.00
170_K	206_E	0.693	1.00
94_Q	179_L	0.693	1.00
205_A	233_A	0.693	1.00
390_T	402_A	0.692	1.00
70_W	83_V	0.691	1.00
222_I	291_A	0.690	1.00
239_K	249_Y	0.689	1.00
147_L	155_P	0.684	1.00
255_S	271_T	0.683	1.00
165_M	182_P	0.682	1.00
261_T	282_V	0.681	1.00
57_V	69_L	0.681	1.00
246_H	250_Q	0.681	1.00
230_L	233_A	0.680	1.00
324_G	431_G	0.679	1.00
192_E	337_T	0.676	1.00
54_H	71_D	0.673	1.00
231_Q	240_T	0.672	1.00
198_L	207_A	0.671	1.00
68_V	81_H	0.670	1.00
221_L	236_C	0.669	1.00
360_G	438_A	0.668	1.00
98_K	103_E	0.663	1.00
45_P	57_V	0.662	1.00
46_L	90_L	0.661	1.00
358_V	434_I	0.658	1.00
401_G	405_H	0.658	1.00
83_V	87_D	0.658	1.00
206_E	209_L	0.654	1.00
53_G	61_F	0.654	1.00
336_P	375_E	0.654	1.00
121_K	137_T	0.652	1.00
108_V	163_L	0.649	1.00
78_P	87_D	0.649	1.00
177_S	180_A	0.648	1.00
323_S	430_K	0.647	1.00
118_T	140_N	0.646	1.00
82_A	85_L	0.645	1.00
234_Y	238_T	0.645	1.00
201_R	204_I	0.644	1.00
299_P	302_A	0.643	1.00
278_G	281_N	0.642	1.00
378_A	405_H	0.641	1.00
395_G	402_A	0.641	1.00
115_N	338_S	0.641	1.00
49_E	69_L	0.641	1.00
88_D	91_T	0.640	1.00
342_A	437_K	0.637	1.00
53_G	56_F	0.637	1.00
98_K	181_N	0.634	1.00
52_D	56_F	0.633	1.00
253_D	256_Q	0.633	1.00
391_Y	417_K	0.632	1.00
154_M	158_T	0.629	1.00
195_M	199_G	0.629	1.00
369_E	372_F	0.628	1.00
202_E	232_N	0.624	1.00
390_T	411_V	0.624	1.00
385_I	388_V	0.623	1.00
276_I	281_N	0.621	1.00
55_S	72_R	0.621	1.00
300_E	303_A	0.619	1.00
253_D	271_T	0.618	1.00
147_L	156_E	0.618	1.00
297_I	302_A	0.616	1.00
356_M	424_V	0.616	1.00
121_K	162_V	0.616	1.00
134_V	158_T	0.615	1.00
361_D	442_M	0.614	1.00
344_Q	348_S	0.614	1.00
335_S	338_S	0.614	1.00
368_L	373_H	0.613	1.00
256_Q	279_K	0.612	1.00
102_Q	181_N	0.611	1.00
188_T	241_Y	0.611	1.00
257_S	273_F	0.610	1.00
340_K	375_E	0.609	1.00
358_V	420_L	0.607	1.00
417_K	421_L	0.607	1.00
124_I	162_V	0.605	1.00
394_L	398_I	0.605	1.00
60_A	64_G	0.605	1.00
359_L	390_T	0.604	1.00
358_V	436_F	0.604	1.00
320_K	326_S	0.603	1.00
58_E	61_F	0.603	1.00
61_F	66_A	0.602	1.00
109_I	128_L	0.601	1.00
347_E	350_E	0.600	1.00
94_Q	97_A	0.599	1.00
222_I	239_K	0.598	1.00
391_Y	414_Y	0.598	1.00
279_K	282_V	0.597	1.00
225_G	242_G	0.597	1.00
187_I	205_A	0.597	1.00
105_G	154_M	0.597	1.00
127_V	131_Q	0.597	1.00
151_V	156_E	0.596	1.00
370_E	401_G	0.595	1.00
333_N	342_A	0.594	1.00
417_K	447_I	0.592	1.00
122_D	126_A	0.592	1.00
386_D	429_S	0.591	1.00
343_I	383_D	0.589	1.00
82_A	86_V	0.587	1.00
286_M	290_A	0.585	1.00
119_T	123_M	0.585	1.00
242_G	250_Q	0.583	1.00
248_D	268_I	0.583	1.00
267_G	299_P	0.582	1.00
111_V	186_V	0.581	1.00
355_K	386_D	0.580	1.00
217_E	235_S	0.580	1.00
403_L	413_H	0.579	1.00
143_N	146_G	0.579	1.00
339_M	376_C	0.579	1.00
263_F	266_K	0.578	1.00
374_K	404_K	0.578	1.00
380_I	388_V	0.578	1.00
169_A	197_D	0.577	1.00
98_K	179_L	0.576	1.00
357_L	388_V	0.576	1.00
171_G	210_E	0.576	1.00
128_L	292_G	0.575	1.00
282_V	286_M	0.575	1.00
70_W	74_V	0.575	1.00
192_E	375_E	0.574	1.00
91_T	97_A	0.573	1.00
378_A	381_S	0.572	1.00
177_S	214_G	0.572	1.00
115_N	191_G	0.571	1.00
359_L	402_A	0.571	1.00
392_G	395_G	0.571	1.00
266_K	269_E	0.569	1.00
346_T	435_L	0.568	1.00
252_Q	256_Q	0.568	1.00
344_Q	383_D	0.568	1.00
165_M	180_A	0.567	1.00
99_A	102_Q	0.566	1.00
243_T	286_M	0.565	1.00
261_T	264_T	0.562	1.00
254_V	282_V	0.562	1.00
122_D	313_G	0.558	1.00
72_R	75_P	0.557	1.00
45_P	68_V	0.556	1.00
391_Y	446_E	0.554	1.00
289_I	306_L	0.551	1.00
289_I	303_A	0.551	1.00
136_K	158_T	0.550	1.00
138_G	153_A	0.550	1.00
141_F	144_H	0.550	1.00
147_L	153_A	0.549	1.00
91_T	94_Q	0.549	1.00
375_E	379_V	0.547	1.00
242_G	247_N	0.545	1.00
154_M	161_A	0.545	1.00
347_E	355_K	0.544	1.00
45_P	54_H	0.544	1.00
78_P	81_H	0.543	1.00
65_V	69_L	0.543	1.00
391_Y	442_M	0.542	1.00
183_D	218_D	0.542	1.00
243_T	254_V	0.540	1.00
92_A	98_K	0.538	1.00
357_L	380_I	0.538	1.00
129_G	134_V	0.538	1.00
176_L	179_L	0.537	1.00
274_I	306_L	0.537	1.00
343_I	380_I	0.537	1.00
272_F	285_A	0.536	1.00
109_I	160_I	0.535	1.00
373_H	377_G	0.534	1.00
422_Q	425_K	0.534	1.00
395_G	399_A	0.533	1.00
418_K	446_E	0.533	1.00
314_M	440_R	0.531	1.00
96_L	99_A	0.530	1.00
301_D	305_G	0.529	1.00
322_D	425_K	0.529	1.00
424_V	434_I	0.528	0.99
79_E	84_I	0.525	0.99
181_N	214_G	0.524	0.99
135_H	154_M	0.523	0.99
377_G	398_I	0.521	0.99
339_M	379_V	0.521	0.99
368_L	372_F	0.520	0.99
387_R	423_A	0.520	0.99
291_A	294_Y	0.520	0.99
290_A	294_Y	0.519	0.99
54_H	89_T	0.519	0.99
111_V	120_T	0.519	0.99
390_T	395_G	0.518	0.99
106_T	161_A	0.518	0.99
147_L	151_V	0.517	0.99
373_H	401_G	0.516	0.99
398_I	402_A	0.516	0.99
377_G	405_H	0.514	0.99
322_D	325_L	0.513	0.99
135_H	162_V	0.509	0.99
90_L	96_L	0.508	0.99
135_H	158_T	0.505	0.99
287_A	291_A	0.505	0.99
234_Y	237_Q	0.504	0.99
168_S	196_Q	0.502	0.99
175_L	179_L	0.501	0.99
57_V	71_D	0.501	0.99
325_L	429_S	0.501	0.99
261_T	267_G	0.500	0.99
352_Y	431_G	0.500	0.99
316_L	342_A	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3zm6A	1	0.9716	100	0.161	Contact Map
4qdiA	1	0.965	100	0.165	Contact Map
4cvkA	1	0.93	100	0.166	Contact Map
1gg4A	1	0.9409	100	0.174	Contact Map
3zl8A	1	0.9147	100	0.205	Contact Map
4c12A	2	0.9694	100	0.208	Contact Map
4bubA	1	0.9562	100	0.22	Contact Map
2wtzA	1	0.9781	100	0.221	Contact Map
1e8cA	1	0.965	100	0.258	Contact Map
2x5oA	1	0.8512	100	0.354	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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