GREMLIN Database
DCTS - Probable C4-dicarboxylate sensor kinase
UniProt: P96601 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 535 (506)
Sequences: 10382 (9034)
Seq/√Len: 401.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
513_H516_Q4.4011.00
463_E519_S4.2641.00
349_I361_A3.8721.00
498_K502_D3.7921.00
474_M510_V3.7511.00
325_R328_V3.4811.00
403_H446_R3.3581.00
405_D450_S3.3531.00
509_E521_S3.3231.00
437_F465_N3.2181.00
457_I523_V3.1581.00
212_Y216_T3.1581.00
501_I522_I3.1191.00
425_L500_I3.0961.00
224_E309_Q2.9841.00
448_D463_E2.8741.00
470_E473_H2.8661.00
510_V520_F2.8511.00
450_S461_L2.8421.00
230_D234_V2.7941.00
460_I522_I2.7621.00
497_V508_I2.7511.00
461_L519_S2.7501.00
211_M214_E2.7471.00
405_D448_D2.6921.00
469_I473_H2.6481.00
459_A523_V2.6321.00
403_H448_D2.6171.00
241_K244_Q2.6091.00
446_R465_N2.5741.00
461_L521_S2.5731.00
417_V504_G2.5671.00
454_T459_A2.5541.00
464_D468_G2.5091.00
512_S518_T2.4931.00
452_E459_A2.4811.00
450_S463_E2.4791.00
500_I504_G2.4321.00
437_F445_K2.2781.00
511_D519_S2.2451.00
353_K359_Q2.2411.00
426_L460_I2.2341.00
401_A446_R2.2291.00
425_L501_I2.2101.00
209_V212_Y2.1781.00
325_R329_E2.1711.00
453_Q526_M2.1571.00
459_A521_S2.1471.00
346_A365_S2.1131.00
437_F447_I2.1111.00
478_Y508_I2.0991.00
211_M216_T2.0861.00
474_M512_S2.0861.00
501_I506_G2.0781.00
314_A318_A2.0731.00
215_R219_F2.0491.00
425_L497_V2.0451.00
207_E211_M2.0401.00
436_S483_T2.0251.00
318_A322_T2.0031.00
255_K259_E1.9881.00
392_I396_R1.9711.00
315_A318_A1.9681.00
445_K465_N1.9431.00
507_T523_V1.9351.00
93_D97_I1.9281.00
418_D421_D1.9161.00
421_D424_V1.8841.00
227_I242_A1.8541.00
225_G308_F1.8311.00
469_I477_L1.8191.00
476_R479_D1.8011.00
511_D521_S1.7871.00
222_M226_V1.7751.00
512_S516_Q1.7741.00
471_P474_M1.7461.00
227_I306_A1.7381.00
502_D507_T1.7321.00
452_E461_L1.7291.00
280_E315_A1.7191.00
189_S193_A1.7181.00
256_V259_E1.7111.00
421_D500_I1.6961.00
406_E451_I1.6771.00
353_K362_F1.6771.00
215_R218_T1.6751.00
348_L357_A1.6681.00
225_G245_I1.6621.00
43_L47_L1.6441.00
391_K427_G1.6371.00
208_I211_M1.6301.00
426_L430_I1.6291.00
211_M215_R1.6271.00
313_E316_K1.6241.00
216_T220_H1.6131.00
346_A366_T1.6131.00
196_I199_Q1.6031.00
512_S515_G1.5971.00
265_R268_E1.5951.00
326_N329_E1.5931.00
473_H476_R1.5731.00
417_V422_I1.5721.00
509_E523_V1.5651.00
280_E283_V1.5651.00
473_H482_F1.5631.00
116_E120_F1.5531.00
240_E244_Q1.5481.00
383_A390_S1.5451.00
433_A447_I1.5291.00
320_E323_G1.5251.00
29_I33_G1.5181.00
78_E81_R1.5011.00
383_A387_L1.4961.00
227_I235_I1.4861.00
477_L510_V1.4841.00
506_G524_F1.4681.00
370_N420_H1.4571.00
386_G423_V1.4561.00
470_E514_A1.4361.00
344_T348_L1.4351.00
426_L462_I1.4121.00
429_L522_I1.4111.00
142_P152_G1.3991.00
47_L50_T1.3991.00
437_F442_S1.3981.00
478_Y510_V1.3951.00
431_E435_G1.3921.00
47_L51_A1.3911.00
321_L324_V1.3871.00
448_D465_N1.3831.00
386_G390_S1.3751.00
352_G358_L1.3731.00
212_Y215_R1.3721.00
297_M300_K1.3691.00
395_G434_F1.3651.00
248_V251_D1.3641.00
369_E373_E1.3601.00
88_Y101_H1.3461.00
319_E322_T1.3401.00
240_E243_K1.3351.00
40_E44_K1.3321.00
238_F243_K1.3171.00
425_L522_I1.3111.00
268_E272_R1.2941.00
386_G419_Q1.2931.00
383_A391_K1.2921.00
458_L526_M1.2911.00
110_K113_G1.2831.00
457_I507_T1.2781.00
316_K319_E1.2761.00
359_Q363_Q1.2711.00
214_E218_T1.2701.00
61_K65_A1.2691.00
479_D482_F1.2511.00
476_R482_F1.2451.00
501_I508_I1.2451.00
411_Q453_Q1.2331.00
316_K320_E1.2331.00
239_N242_A1.2321.00
349_I353_K1.2291.00
50_T53_T1.2281.00
422_I504_G1.2251.00
242_A246_F1.2241.00
43_L46_R1.2241.00
238_F242_A1.2151.00
152_G159_T1.2151.00
335_N340_N1.2121.00
387_L430_I1.2091.00
228_A303_G1.2081.00
225_G242_A1.1981.00
410_L451_I1.1981.00
103_V106_S1.1941.00
69_Q72_A1.1941.00
345_I361_A1.1911.00
229_I306_A1.1871.00
454_T523_V1.1831.00
469_I518_T1.1821.00
477_L520_F1.1811.00
243_K249_Q1.1741.00
349_I358_L1.1711.00
430_I449_I1.1691.00
471_P513_H1.1691.00
349_I362_F1.1661.00
225_G239_N1.1651.00
294_P303_G1.1531.00
381_N451_I1.1421.00
194_R198_K1.1411.00
211_M218_T1.1391.00
409_S453_Q1.1381.00
311_R315_A1.1301.00
199_Q203_L1.1241.00
209_V213_E1.1241.00
510_V518_T1.1231.00
238_F252_L1.1231.00
381_N385_A1.1191.00
337_E340_N1.1171.00
116_E119_A1.1101.00
289_M309_Q1.1051.00
332_R337_E1.0901.00
473_H484_V1.0901.00
501_I524_F1.0771.00
394_R398_L1.0761.00
395_G447_I1.0761.00
134_G138_R1.0691.00
344_T364_A1.0681.00
88_Y157_G1.0661.00
296_V301_V1.0661.00
424_V500_I1.0631.00
286_K289_M1.0591.00
193_A197_K1.0581.00
36_Q40_E1.0561.00
394_R397_E1.0521.00
348_L360_L1.0471.00
429_L462_I1.0461.00
46_R50_T1.0451.00
395_G402_V1.0421.00
347_G351_L1.0421.00
419_Q423_V1.0411.00
407_N410_L1.0381.00
338_H341_K1.0341.00
222_M225_G1.0311.00
42_E46_R1.0301.00
383_A386_G1.0271.00
454_T457_I1.0261.00
478_Y520_F1.0261.00
469_I510_V1.0241.00
421_D503_K1.0191.00
322_T325_R1.0141.00
109_K113_G1.0121.00
152_G156_V1.0091.00
362_F366_T1.0081.00
469_I474_M1.0071.00
291_S294_P1.0071.00
229_I235_I1.0061.00
59_E62_E1.0021.00
114_A118_A1.0001.00
323_G327_F0.9991.00
360_L364_A0.9981.00
73_V77_V0.9951.00
42_E45_K0.9931.00
279_E282_R0.9931.00
344_T360_L0.9881.00
338_H368_Q0.9871.00
46_R49_N0.9861.00
337_E341_K0.9851.00
144_K150_Q0.9841.00
317_M320_E0.9791.00
118_A123_H0.9771.00
226_V307_I0.9741.00
207_E212_Y0.9731.00
212_Y218_T0.9711.00
340_N436_S0.9711.00
390_S394_R0.9681.00
219_F237_I0.9651.00
139_A142_P0.9641.00
435_G483_T0.9641.00
425_L504_G0.9631.00
315_A319_E0.9631.00
228_A237_I0.9611.00
423_V427_G0.9551.00
171_K175_A0.9521.00
356_K360_L0.9521.00
51_A55_S0.9471.00
33_G36_Q0.9461.00
314_A317_M0.9461.00
118_A122_E0.9431.00
429_L520_F0.9431.00
289_M314_A0.9411.00
407_N452_E0.9391.00
159_T162_G0.9331.00
219_F226_V0.9311.00
264_S268_E0.9291.00
451_I460_I0.9231.00
364_A371_V0.9221.00
509_E522_I0.9201.00
449_I462_I0.9121.00
243_K252_L0.9091.00
294_P301_V0.9081.00
88_Y102_P0.9081.00
72_A75_H0.9071.00
357_A360_L0.9071.00
185_G189_S0.9041.00
334_Q375_L0.9031.00
265_R269_I0.9021.00
117_E121_A0.9021.00
492_Y496_L0.9011.00
41_R45_K0.8991.00
76_A80_I0.8991.00
383_A388_L0.8981.00
33_G37_H0.8981.00
209_V214_E0.8971.00
48_M52_R0.8961.00
297_M302_I0.8961.00
382_D386_G0.8961.00
230_D236_T0.8951.00
45_K48_M0.8951.00
136_A139_A0.8941.00
385_A389_L0.8931.00
212_Y219_F0.8921.00
60_V64_L0.8881.00
267_P271_E0.8881.00
429_L497_V0.8881.00
390_S427_G0.8871.00
41_R44_K0.8791.00
279_E283_V0.8771.00
469_I512_S0.8751.00
385_A404_I0.8721.00
31_L35_I0.8721.00
78_E82_M0.8711.00
214_E219_F0.8701.00
339_M368_Q0.8681.00
400_I437_F0.8671.00
422_I522_I0.8661.00
480_K499_Q0.8661.00
361_A365_S0.8651.00
266_L269_I0.8651.00
225_G246_F0.8621.00
467_C518_T0.8601.00
380_Q483_T0.8571.00
286_K310_D0.8511.00
377_R421_D0.8511.00
391_K434_F0.8491.00
437_F444_D0.8451.00
133_I136_A0.8431.00
32_I36_Q0.8421.00
338_H342_L0.8411.00
470_E477_L0.8411.00
145_D149_N0.8401.00
285_G289_M0.8401.00
44_K48_M0.8361.00
382_D390_S0.8351.00
485_N488_G0.8351.00
324_V327_F0.8341.00
400_I447_I0.8331.00
208_I212_Y0.8301.00
79_E83_I0.8301.00
324_V328_V0.8291.00
129_A140_F0.8271.00
457_I525_P0.8271.00
27_G31_L0.8251.00
499_Q502_D0.8241.00
138_R141_Y0.8241.00
483_T490_T0.8241.00
228_A305_V0.8221.00
382_D419_Q0.8221.00
384_A451_I0.8211.00
348_L361_A0.8211.00
44_K47_L0.8201.00
114_A117_E0.8201.00
129_A132_E0.8191.00
411_Q415_E0.8181.00
370_N373_E0.8181.00
337_E496_L0.8171.00
90_V98_R0.8161.00
239_N312_T0.8161.00
92_M98_R0.8161.00
338_H372_T0.8151.00
456_D526_M0.8121.00
320_E324_V0.8101.00
28_G32_I0.8091.00
442_S445_K0.8091.00
469_I494_L0.8081.00
234_V256_V0.8081.00
331_L340_N0.8071.00
83_I86_A0.8071.00
345_I365_S0.8061.00
346_A349_I0.8031.00
132_E136_A0.8011.00
270_V273_N0.8001.00
195_H199_Q0.7991.00
160_L164_A0.7971.00
339_M373_E0.7951.00
393_R397_E0.7951.00
209_V216_T0.7931.00
168_L171_K0.7921.00
98_R102_P0.7911.00
341_K368_Q0.7911.00
245_I288_I0.7901.00
222_M307_I0.7881.00
317_M321_L0.7871.00
333_V480_K0.7871.00
356_K359_Q0.7851.00
469_I475_P0.7811.00
388_L392_I0.7811.00
388_L404_I0.7811.00
388_L402_V0.7791.00
241_K245_I0.7771.00
364_A367_E0.7771.00
435_G484_V0.7751.00
107_I111_S0.7741.00
387_L391_K0.7731.00
90_V101_H0.7731.00
400_I434_F0.7721.00
219_F239_N0.7711.00
374_F490_T0.7711.00
497_V501_I0.7691.00
343_H346_A0.7681.00
278_N282_R0.7671.00
430_I447_I0.7661.00
223_N226_V0.7651.00
351_L357_A0.7631.00
384_A449_I0.7621.00
161_P165_D0.7611.00
350_Q362_F0.7591.00
405_D452_E0.7591.00
366_T370_N0.7571.00
375_L379_I0.7571.00
346_A369_E0.7571.00
183_G187_A0.7561.00
321_L328_V0.7561.00
384_A387_L0.7551.00
349_I365_S0.7531.00
340_N347_G0.7531.00
426_L522_I0.7521.00
140_F153_V0.7511.00
92_M155_L0.7491.00
131_G138_R0.7491.00
322_T328_V0.7481.00
506_G525_P0.7461.00
25_L29_I0.7461.00
17_Y20_V0.7461.00
424_V496_L0.7451.00
187_A191_L0.7441.00
220_H240_E0.7441.00
63_A66_R0.7431.00
233_L239_N0.7421.00
435_G486_K0.7421.00
436_S467_C0.7401.00
209_V218_T0.7401.00
209_V215_R0.7381.00
228_A236_T0.7371.00
172_R176_F0.7371.00
384_A404_I0.7341.00
331_L343_H0.7331.00
346_A350_Q0.7301.00
478_Y498_K0.7301.00
292_R304_A0.7281.00
43_L50_T0.7261.00
228_A239_N0.7261.00
115_D118_A0.7251.00
386_G389_L0.7251.00
169_H173_D0.7221.00
331_L334_Q0.7191.00
336_H428_N0.7191.00
352_G355_E0.7181.00
296_V302_I0.7161.00
93_D96_H0.7151.00
141_Y144_K0.7141.00
178_V182_L0.7141.00
330_A335_N0.7131.00
39_E42_E0.7131.00
44_K50_T0.7121.00
248_V252_L0.7121.00
350_Q354_S0.7071.00
39_E43_L0.7071.00
60_V63_A0.7071.00
311_R314_A0.7051.00
383_A392_I0.7041.00
401_A444_D0.7031.00
273_N276_V0.7031.00
30_V34_N0.7021.00
365_S369_E0.7021.00
365_S368_Q0.7011.00
335_N436_S0.7011.00
242_A245_I0.7011.00
471_P475_P0.7001.00
137_V141_Y0.7001.00
136_A140_F0.6981.00
374_F421_D0.6961.00
129_A133_I0.6961.00
54_V60_V0.6951.00
323_G326_N0.6951.00
235_I254_G0.6951.00
210_R214_E0.6941.00
45_K49_N0.6941.00
420_H423_V0.6941.00
117_E120_F0.6931.00
236_T303_G0.6931.00
335_N339_M0.6921.00
228_A242_A0.6921.00
75_H78_E0.6911.00
51_A54_V0.6881.00
391_K430_I0.6881.00
424_V427_G0.6881.00
415_E524_F0.6881.00
90_V96_H0.6871.00
387_L423_V0.6871.00
435_G485_N0.6861.00
339_M376_H0.6861.00
376_H380_Q0.6851.00
391_K394_R0.6841.00
49_N53_T0.6820.99
348_L352_G0.6810.99
226_V239_N0.6800.99
381_N406_E0.6790.99
422_I501_I0.6770.99
93_D99_Y0.6770.99
217_A221_S0.6750.99
46_R51_A0.6720.99
371_V379_I0.6720.99
338_H371_V0.6710.99
387_L390_S0.6680.99
156_V159_T0.6680.99
115_D122_E0.6670.99
330_A483_T0.6670.99
367_E371_V0.6650.99
370_N374_F0.6640.99
332_R371_V0.6640.99
173_D176_F0.6630.99
141_Y145_D0.6620.99
207_E214_E0.6620.99
218_T221_S0.6610.99
234_V254_G0.6590.99
153_V156_V0.6580.99
219_F228_A0.6570.99
436_S484_V0.6560.99
229_I292_R0.6540.99
231_N300_K0.6520.99
364_A376_H0.6500.99
153_V157_G0.6500.99
389_L392_I0.6460.99
430_I434_F0.6460.99
433_A462_I0.6430.99
330_A376_H0.6420.99
207_E215_R0.6420.99
140_F155_L0.6420.99
399_G443_E0.6390.99
401_A404_I0.6390.99
107_I110_K0.6380.99
115_D119_A0.6360.99
235_I239_N0.6360.99
332_R338_H0.6360.99
31_L38_T0.6340.99
363_Q386_G0.6340.99
210_R213_E0.6330.99
214_E237_I0.6320.99
168_L172_R0.6310.99
59_E63_A0.6310.99
352_G361_A0.6300.99
393_R396_R0.6260.99
48_M51_A0.6260.99
229_I233_L0.6260.99
321_L327_F0.6260.99
34_N38_T0.6250.99
123_H127_S0.6240.99
382_D385_A0.6240.99
155_L159_T0.6230.99
339_M369_E0.6230.99
303_G308_F0.6230.99
330_A340_N0.6230.99
400_I404_I0.6230.99
364_A369_E0.6220.99
202_Q205_P0.6210.99
373_E377_R0.6200.99
314_A321_L0.6200.99
82_M86_A0.6200.99
522_I525_P0.6200.99
77_V81_R0.6190.99
341_K496_L0.6180.99
464_D517_G0.6170.99
375_L380_Q0.6170.99
328_V332_R0.6160.99
483_T486_K0.6150.99
50_T55_S0.6140.99
365_S378_S0.6130.99
338_H348_L0.6130.99
152_G155_L0.6130.99
185_G188_G0.6100.99
483_T488_G0.6100.99
378_S480_K0.6100.99
322_T326_N0.6090.99
170_L173_D0.6080.99
468_G517_G0.6080.99
342_L348_L0.6080.99
42_E47_L0.6080.99
394_R431_E0.6080.99
332_R492_Y0.6070.99
98_R101_H0.6070.99
228_A306_A0.6060.99
266_L270_V0.6060.99
508_I522_I0.6050.99
475_P479_D0.6040.99
62_E66_R0.6010.99
480_K492_Y0.6000.99
156_V163_I0.6000.99
293_I305_V0.6000.99
313_E320_E0.5970.99
255_K260_V0.5960.99
378_S499_Q0.5950.99
340_N344_T0.5930.99
135_T138_R0.5930.99
351_L355_E0.5930.99
207_E216_T0.5920.99
337_E424_V0.5910.99
337_E488_G0.5910.99
480_K495_Y0.5890.99
37_H40_E0.5890.99
152_G160_L0.5880.99
246_F288_I0.5870.98
501_I507_T0.5870.98
313_E317_M0.5870.98
203_L206_H0.5860.98
333_V343_H0.5840.98
341_K481_G0.5840.98
428_N436_S0.5830.98
461_L511_D0.5800.98
242_A308_F0.5790.98
218_T222_M0.5790.98
380_Q490_T0.5780.98
469_I520_F0.5760.98
422_I524_F0.5740.98
402_V447_I0.5730.98
160_L163_I0.5710.98
129_A136_A0.5710.98
134_G159_T0.5710.98
421_D425_L0.5710.98
357_A361_A0.5710.98
272_R276_V0.5690.98
343_H364_A0.5690.98
86_A90_V0.5690.98
142_P146_Q0.5680.98
368_Q374_F0.5680.98
111_S116_E0.5680.98
339_M424_V0.5670.98
37_H41_R0.5670.98
372_T379_I0.5660.98
312_T316_K0.5660.98
167_L171_K0.5660.98
42_E51_A0.5660.98
466_G469_I0.5650.98
400_I444_D0.5640.98
133_I141_Y0.5640.98
337_E428_N0.5630.98
442_S465_N0.5620.98
376_H490_T0.5620.98
375_L378_S0.5620.98
501_I504_G0.5620.98
329_E333_V0.5610.98
257_I261_L0.5610.98
142_P151_I0.5610.98
88_Y92_M0.5610.98
225_G310_D0.5610.98
154_V159_T0.5600.98
190_F194_R0.5600.98
340_N435_G0.5590.98
186_L190_F0.5560.98
231_N302_I0.5560.98
130_K136_A0.5550.98
278_N283_V0.5540.98
340_N351_L0.5540.98
330_A334_Q0.5530.98
138_R144_K0.5520.98
294_P304_A0.5520.98
277_Y280_E0.5520.98
481_G492_Y0.5520.98
214_E217_A0.5510.98
267_P273_N0.5510.98
400_I465_N0.5500.98
390_S423_V0.5500.98
428_N490_T0.5490.98
288_I292_R0.5480.98
291_S295_I0.5470.98
340_N368_Q0.5470.98
318_A321_L0.5460.98
55_S61_K0.5460.98
388_L391_K0.5460.98
428_N489_G0.5450.98
20_V23_S0.5450.98
381_N390_S0.5450.98
340_N372_T0.5410.97
304_A308_F0.5410.97
52_R55_S0.5400.97
225_G228_A0.5380.97
201_F205_P0.5380.97
395_G398_L0.5380.97
395_G399_G0.5380.97
303_G310_D0.5380.97
347_G365_S0.5380.97
375_L481_G0.5380.97
290_S308_F0.5380.97
292_R295_I0.5350.97
227_I308_F0.5320.97
73_V100_T0.5320.97
282_R287_V0.5310.97
359_Q362_F0.5310.97
243_K248_V0.5300.97
195_H198_K0.5300.97
473_H485_N0.5300.97
348_L364_A0.5290.97
125_Y140_F0.5290.97
336_H340_N0.5290.97
382_D391_K0.5280.97
193_A196_I0.5270.97
106_S109_K0.5270.97
133_I138_R0.5270.97
138_R157_G0.5250.97
120_F124_I0.5250.97
494_L520_F0.5250.97
145_D151_I0.5240.97
214_E228_A0.5240.97
453_Q456_D0.5230.97
307_I310_D0.5230.97
242_A306_A0.5230.97
421_D504_G0.5230.97
319_E323_G0.5230.97
367_E423_V0.5230.97
175_A179_V0.5220.97
332_R340_N0.5210.97
334_Q344_T0.5200.97
75_H79_E0.5200.97
108_G112_E0.5200.97
264_S267_P0.5200.97
297_M301_V0.5180.97
437_F483_T0.5180.97
76_A79_E0.5180.97
364_A372_T0.5180.97
428_N497_V0.5170.97
333_V340_N0.5160.97
344_T347_G0.5160.97
29_I32_I0.5150.97
339_M374_F0.5150.97
374_F379_I0.5150.97
472_T514_A0.5150.97
364_A480_K0.5150.97
376_H435_G0.5150.97
335_N435_G0.5140.97
508_I520_F0.5140.97
133_I142_P0.5140.97
368_Q377_R0.5130.97
269_I273_N0.5130.97
40_E43_L0.5120.96
334_Q372_T0.5110.96
198_K201_F0.5100.96
227_I238_F0.5090.96
453_Q458_L0.5090.96
87_D92_M0.5090.96
364_A375_L0.5080.96
432_N493_G0.5080.96
384_A388_L0.5080.96
51_A156_V0.5080.96
265_R273_N0.5070.96
108_G111_S0.5070.96
176_F180_L0.5060.96
136_A144_K0.5060.96
13_T16_S0.5050.96
334_Q343_H0.5050.96
368_Q379_I0.5040.96
333_V378_S0.5040.96
398_L434_F0.5040.96
330_A431_E0.5030.96
331_L339_M0.5030.96
332_R335_N0.5020.96
340_N376_H0.5020.96
356_K389_L0.5010.96
427_G431_E0.5010.96
219_F225_G0.5010.96
469_I478_Y0.5010.96
382_D387_L0.5000.96
246_F308_F0.5000.96
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4i5sA 2 0.6019 100 0.449 Contact Map
3a0rA 2 0.5682 100 0.462 Contact Map
4gczA 2 0.6093 100 0.463 Contact Map
4r3aA 1 0.5495 100 0.559 Contact Map
2c2aA 2 0.4019 100 0.6 Contact Map
4q20A 2 0.3776 100 0.609 Contact Map
3d36A 2 0.3776 100 0.61 Contact Map
3jz3A 2 0.2636 100 0.614 Contact Map
4mpcA 2 0.5346 100 0.615 Contact Map
4bixA 2 0.3944 100 0.615 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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