YDAO - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YDAO - Uncharacterized amino acid permease YdaO

UniProt:	P96589	Sequences: MYHSIKRFLIGKPLKSQAAGEQKLTKLKALAMLSSDALSSVAYGTEQILIILATISAAAFWYSIPIAVGVLILLLALILSYRQIIYAYPQGGGAYIVSKENLGEKPGLIAGGSLLVDYILTVAVSISAGTDAITSAFPALHDYHVPIAIFLVLVIMILNLRGLSESASILAYPVYLFVVALLVLIAVGLFKLMTGQIDQPAHHTSLGTPVAGITLFLLLKAFSSGCSALTGVEAISNAIPAFKNPPARNAARTLAMMGILLAILFSGITVLAYGYGTAPKPDETVVSQIASETFGRNVFYYVIQGVTSLILVLAANTGFSAFPQLAFNLARDQYMPRMFTVRGDRLGFSNGIIFLGFASIVLIILFGGQTEHLIPLYAVGVFIPFTLSQTGMCMKWIKQKPKGWIGKMLINSCGALISFMVLSILFVTKFNVVWPVLIFMPIVVLLFFAIKNHYTAVGEQLRIVDKEPEEIKGTVVIVPVAGVTTVVQKSIHYAKSLSDQVIAVHVSFDREQEKKFEKRWEELNNGVRLVTLHSSYRSLVHPFDKFLETVEAKAKKEQFSVMVLFPQFITKKRWHTILHNQSAFLLRVRLFWKKDIMVATLPYHFKK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	607 (545)
Sequences:	2467 (1672)
Seq/√Len:	71.6

ECOLI - ANSP
BACSU - YDAO YBEC ASPP
HALSA - Q9HQB3 Q9HSL5
SULSO - Q97Z63 Q97WS3 Q97X49

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
152_V	363_I	5.371	1.00
95_Y	332_D	5.195	1.00
451_K	455_T	5.129	1.00
149_I	360_I	4.541	1.00
390_T	415_A	3.855	1.00
31_A	259_I	3.744	1.00
501_V	504_V	3.603	1.00
156_M	356_G	3.588	1.00
121_T	125_S	3.463	1.00
353_I	357_F	3.440	1.00
56_S	60_F	3.386	1.00
180_A	302_V	3.374	1.00
143_Y	146_P	3.332	1.00
342_R	349_S	2.981	1.00
267_G	271_L	2.958	1.00
125_S	314_A	2.865	1.00
249_N	253_T	2.818	1.00
286_V	290_A	2.816	1.00
264_L	267_G	2.811	1.00
342_R	348_F	2.778	1.00
265_F	269_T	2.775	1.00
60_F	272_A	2.759	1.00
284_T	290_A	2.668	1.00
258_G	262_A	2.585	1.00
211_A	214_T	2.486	1.00
149_I	153_L	2.357	1.00
99_K	107_G	2.338	1.00
283_E	286_V	2.314	1.00
186_A	190_F	2.310	1.00
436_V	441_P	2.307	1.00
516_F	520_W	2.284	1.00
68_V	72_I	2.277	1.00
284_T	288_Q	2.272	1.00
343_G	349_S	2.261	1.00
159_N	316_N	2.253	1.00
515_K	518_K	2.237	1.00
247_A	251_A	2.222	1.00
252_R	256_M	2.221	1.00
536_Y	542_P	2.214	1.00
343_G	348_F	2.210	1.00
434_W	438_I	2.206	1.00
414_G	418_S	2.192	1.00
493_Y	562_M	2.189	1.00
344_D	349_S	2.174	1.00
200_P	203_H	2.157	1.00
153_L	360_I	2.154	1.00
409_L	413_C	2.142	1.00
419_F	423_S	2.108	1.00
386_T	419_F	2.102	1.00
257_M	264_L	2.086	1.00
122_V	359_S	2.082	1.00
290_A	294_F	2.080	1.00
57_A	60_F	2.062	1.00
288_Q	293_T	2.059	1.00
543_F	547_L	2.055	1.00
210_V	214_T	2.009	1.00
250_A	253_T	2.004	1.00
410_I	413_C	2.001	1.00
519_R	522_E	1.982	1.00
346_L	349_S	1.981	1.00
410_I	414_G	1.979	1.00
34_S	37_A	1.977	1.00
92_G	95_Y	1.965	1.00
23_K	246_P	1.926	1.00
407_K	410_I	1.923	1.00
278_A	282_D	1.917	1.00
409_L	412_S	1.903	1.00
262_A	266_S	1.867	1.00
26_K	29_A	1.827	1.00
150_F	154_V	1.817	1.00
549_T	553_K	1.804	1.00
411_N	414_G	1.799	1.00
394_M	398_K	1.762	1.00
520_W	523_L	1.757	1.00
285_V	288_Q	1.755	1.00
483_V	516_F	1.748	1.00
513_E	517_E	1.747	1.00
514_K	517_E	1.717	1.00
180_A	303_I	1.709	1.00
287_S	300_Y	1.703	1.00
140_L	143_Y	1.701	1.00
447_F	451_K	1.696	1.00
154_V	158_L	1.694	1.00
205_S	209_P	1.690	1.00
514_K	518_K	1.680	1.00
199_Q	202_H	1.679	1.00
190_F	194_T	1.679	1.00
176_L	306_V	1.678	1.00
249_N	252_R	1.674	1.00
250_A	267_G	1.673	1.00
393_C	412_S	1.656	1.00
253_T	268_I	1.654	1.00
189_L	193_M	1.645	0.99
435_P	438_I	1.636	0.99
149_I	364_I	1.633	0.99
285_V	290_A	1.631	0.99
111_G	329_L	1.627	0.99
39_S	377_Y	1.626	0.99
249_N	254_L	1.623	0.99
518_K	522_E	1.622	0.99
125_S	318_G	1.620	0.99
326_A	335_M	1.617	0.99
182_L	186_A	1.605	0.99
264_L	268_I	1.604	0.99
83_Q	87_A	1.598	0.99
375_P	378_A	1.585	0.99
206_L	209_P	1.578	0.99
400_K	404_W	1.571	0.99
188_G	270_V	1.559	0.99
408_M	414_G	1.557	0.99
437_L	441_P	1.553	0.99
258_G	276_G	1.549	0.99
342_R	347_G	1.541	0.99
250_A	254_L	1.526	0.99
84_I	388_S	1.512	0.99
412_S	416_L	1.506	0.99
125_S	381_V	1.484	0.99
115_L	326_A	1.484	0.99
492_H	497_L	1.483	0.99
343_G	346_L	1.478	0.99
253_T	257_M	1.475	0.99
268_I	271_L	1.469	0.99
121_T	377_Y	1.464	0.99
517_E	521_E	1.457	0.99
151_L	312_V	1.453	0.99
481_A	487_V	1.452	0.99
237_N	321_A	1.440	0.99
345_R	349_S	1.432	0.99
105_K	448_F	1.431	0.99
253_T	256_M	1.420	0.98
415_A	418_S	1.400	0.98
34_S	42_A	1.391	0.98
126_I	315_A	1.391	0.98
475_V	479_P	1.389	0.98
43_Y	125_S	1.385	0.98
145_V	363_I	1.381	0.98
45_T	269_T	1.378	0.98
56_S	59_A	1.377	0.98
40_S	43_Y	1.376	0.98
39_S	121_T	1.375	0.98
127_S	363_I	1.372	0.98
178_V	182_L	1.366	0.98
133_I	147_I	1.364	0.98
413_C	416_L	1.346	0.98
517_E	523_L	1.346	0.98
260_L	264_L	1.346	0.98
284_T	289_I	1.344	0.98
542_P	546_F	1.342	0.98
83_Q	396_W	1.340	0.98
510_R	513_E	1.332	0.98
464_V	467_E	1.329	0.98
185_I	188_G	1.307	0.97
491_I	494_A	1.303	0.97
286_V	289_I	1.297	0.97
258_G	267_G	1.296	0.97
254_L	258_G	1.296	0.97
37_A	42_A	1.295	0.97
481_A	484_T	1.294	0.97
197_I	200_P	1.282	0.97
84_I	321_A	1.279	0.97
254_L	267_G	1.273	0.97
443_V	447_F	1.271	0.97
134_T	144_H	1.271	0.97
70_V	73_L	1.265	0.97
474_T	493_Y	1.261	0.97
446_L	450_I	1.259	0.97
104_E	107_G	1.251	0.97
474_T	562_M	1.247	0.97
403_G	406_G	1.242	0.96
175_Y	179_V	1.240	0.96
252_R	264_L	1.237	0.96
480_V	487_V	1.236	0.96
267_G	270_V	1.235	0.96
265_F	271_L	1.234	0.96
490_S	497_L	1.234	0.96
285_V	295_G	1.231	0.96
269_T	273_Y	1.226	0.96
132_A	304_Q	1.225	0.96
264_L	277_T	1.215	0.96
33_L	44_G	1.211	0.96
519_R	523_L	1.205	0.96
267_G	275_Y	1.198	0.96
492_H	495_K	1.198	0.96
177_F	314_A	1.196	0.96
117_D	120_L	1.195	0.96
450_I	453_H	1.186	0.95
253_T	264_L	1.182	0.95
475_V	500_Q	1.182	0.95
459_E	463_I	1.178	0.95
234_A	317_T	1.176	0.95
132_A	307_T	1.173	0.95
322_F	326_A	1.173	0.95
249_N	264_L	1.172	0.95
414_G	425_L	1.172	0.95
66_I	69_G	1.168	0.95
283_E	287_S	1.167	0.95
509_D	512_Q	1.165	0.95
422_L	426_F	1.162	0.95
125_S	377_Y	1.159	0.95
90_Q	96_I	1.158	0.95
102_L	106_P	1.155	0.95
345_R	348_F	1.151	0.95
435_P	439_F	1.144	0.94
105_K	444_V	1.144	0.94
36_D	43_Y	1.141	0.94
122_V	152_V	1.141	0.94
271_L	276_G	1.140	0.94
94_A	233_E	1.137	0.94
547_L	561_V	1.137	0.94
489_K	492_H	1.136	0.94
179_V	183_V	1.136	0.94
33_L	238_A	1.136	0.94
78_I	258_G	1.134	0.94
494_A	498_S	1.132	0.94
242_F	249_N	1.132	0.94
127_S	373_L	1.131	0.94
208_T	213_I	1.126	0.94
333_Q	337_R	1.123	0.94
350_N	353_I	1.117	0.94
249_N	257_M	1.116	0.94
141_H	144_H	1.113	0.94
74_L	232_V	1.111	0.94
183_V	299_F	1.109	0.93
497_L	501_V	1.107	0.93
266_S	269_T	1.104	0.93
209_P	212_G	1.096	0.93
475_V	502_I	1.093	0.93
71_L	74_L	1.091	0.93
181_L	264_L	1.088	0.93
530_V	551_E	1.082	0.93
540_V	544_D	1.081	0.93
551_E	555_K	1.078	0.92
86_Y	247_A	1.075	0.92
477_I	550_V	1.072	0.92
38_L	42_A	1.069	0.92
248_R	252_R	1.069	0.92
445_L	449_A	1.068	0.92
495_K	526_G	1.064	0.92
278_A	281_P	1.061	0.92
121_T	314_A	1.059	0.92
136_A	139_A	1.059	0.92
95_Y	231_G	1.059	0.92
249_N	267_G	1.059	0.92
477_I	480_V	1.057	0.92
449_A	452_N	1.049	0.91
518_K	524_N	1.045	0.91
350_N	354_F	1.039	0.91
408_M	412_S	1.035	0.91
46_E	131_D	1.029	0.91
64_I	68_V	1.028	0.91
344_D	348_F	1.026	0.90
444_V	448_F	1.026	0.90
125_S	311_L	1.026	0.90
288_Q	294_F	1.023	0.90
512_Q	522_E	1.023	0.90
260_L	267_G	1.021	0.90
415_A	419_F	1.021	0.90
209_P	214_T	1.019	0.90
162_G	231_G	1.017	0.90
493_Y	498_S	1.017	0.90
459_E	462_R	1.014	0.90
438_I	441_P	1.010	0.90
179_V	302_V	1.009	0.90
532_L	549_T	1.008	0.90
314_A	381_V	1.008	0.90
254_L	271_L	1.004	0.89
26_K	33_L	1.004	0.89
310_I	314_A	1.003	0.89
538_S	550_V	0.999	0.89
551_E	556_K	0.995	0.89
253_T	271_L	0.993	0.89
434_W	437_L	0.990	0.89
323_P	351_G	0.985	0.89
170_L	174_V	0.983	0.88
314_A	318_G	0.980	0.88
133_I	308_S	0.979	0.88
515_K	519_R	0.974	0.88
241_A	324_Q	0.972	0.88
510_R	514_K	0.971	0.88
264_L	271_L	0.970	0.88
61_W	65_P	0.970	0.88
285_V	293_T	0.970	0.88
44_G	177_F	0.967	0.88
290_A	295_G	0.963	0.87
126_I	151_L	0.961	0.87
462_R	466_K	0.960	0.87
543_F	561_V	0.959	0.87
40_S	44_G	0.955	0.87
357_F	361_V	0.955	0.87
68_V	75_L	0.955	0.87
319_F	322_F	0.951	0.87
441_P	445_L	0.951	0.87
36_D	317_T	0.948	0.87
130_T	383_I	0.946	0.87
298_V	353_I	0.945	0.86
37_A	83_Q	0.944	0.86
261_L	267_G	0.944	0.86
288_Q	291_S	0.942	0.86
524_N	527_V	0.942	0.86
514_K	522_E	0.939	0.86
130_T	151_L	0.939	0.86
283_E	293_T	0.935	0.86
289_I	294_F	0.934	0.86
93_G	162_G	0.931	0.86
526_G	548_E	0.931	0.86
479_P	543_F	0.931	0.86
502_I	505_H	0.930	0.86
263_I	267_G	0.930	0.86
507_S	513_E	0.929	0.85
509_D	513_E	0.927	0.85
545_K	549_T	0.926	0.85
264_L	272_A	0.925	0.85
226_C	313_L	0.923	0.85
84_I	324_Q	0.918	0.85
500_Q	507_S	0.915	0.85
256_M	264_L	0.914	0.85
117_D	381_V	0.908	0.84
503_A	506_V	0.906	0.84
68_V	71_L	0.903	0.84
287_S	290_A	0.903	0.84
168_S	321_A	0.903	0.84
533_H	553_K	0.900	0.84
29_A	38_L	0.900	0.84
80_S	87_A	0.900	0.84
411_N	418_S	0.898	0.84
103_G	107_G	0.897	0.83
566_P	569_I	0.896	0.83
86_Y	251_A	0.896	0.83
433_V	437_L	0.895	0.83
174_V	316_N	0.894	0.83
81_Y	377_Y	0.892	0.83
36_D	44_G	0.891	0.83
170_L	321_A	0.891	0.83
129_G	151_L	0.891	0.83
438_I	442_I	0.886	0.83
530_V	533_H	0.885	0.83
146_P	150_F	0.885	0.83
131_D	284_T	0.880	0.82
29_A	235_I	0.878	0.82
410_I	416_L	0.877	0.82
214_T	269_T	0.876	0.82
29_A	33_L	0.875	0.82
134_T	140_L	0.875	0.82
255_A	258_G	0.874	0.82
325_L	384_P	0.873	0.82
54_T	451_K	0.872	0.82
43_Y	81_Y	0.868	0.81
267_G	272_A	0.868	0.81
442_I	445_L	0.868	0.81
125_S	385_F	0.868	0.81
304_Q	307_T	0.867	0.81
253_T	267_G	0.867	0.81
534_S	542_P	0.867	0.81
516_F	519_R	0.866	0.81
197_I	201_A	0.866	0.81
458_G	463_I	0.859	0.81
436_V	439_F	0.858	0.81
272_A	277_T	0.852	0.80
170_L	317_T	0.852	0.80
176_L	180_A	0.851	0.80
115_L	355_L	0.851	0.80
78_I	257_M	0.850	0.80
33_L	235_I	0.850	0.80
198_D	201_A	0.849	0.80
283_E	288_Q	0.848	0.80
330_A	340_T	0.843	0.79
257_M	267_G	0.838	0.79
276_G	279_P	0.837	0.79
80_S	389_Q	0.836	0.79
446_L	449_A	0.835	0.79
502_I	507_S	0.835	0.79
178_V	417_I	0.834	0.79
250_A	264_L	0.834	0.79
127_S	148_A	0.831	0.78
489_K	493_Y	0.829	0.78
199_Q	203_H	0.829	0.78
88_Y	101_N	0.826	0.78
32_M	174_V	0.825	0.78
361_V	365_L	0.824	0.78
24_L	29_A	0.823	0.78
39_S	43_Y	0.823	0.78
517_E	520_W	0.821	0.78
549_T	552_A	0.820	0.78
27_L	31_A	0.820	0.78
538_S	541_H	0.819	0.77
152_V	360_I	0.819	0.77
421_V	425_L	0.817	0.77
248_R	251_A	0.816	0.77
156_M	353_I	0.814	0.77
257_M	261_L	0.813	0.77
451_K	518_K	0.812	0.77
338_M	350_N	0.811	0.77
567_Q	570_T	0.804	0.76
59_A	62_Y	0.800	0.76
267_G	277_T	0.796	0.75
119_I	358_A	0.796	0.75
425_L	430_F	0.794	0.75
60_F	63_S	0.787	0.75
402_K	406_G	0.787	0.75
257_M	276_G	0.783	0.74
552_A	555_K	0.781	0.74
459_E	466_K	0.781	0.74
318_G	372_H	0.780	0.74
38_L	43_Y	0.780	0.74
236_S	388_S	0.780	0.74
505_H	547_L	0.779	0.74
312_V	330_A	0.775	0.73
114_L	380_G	0.774	0.73
32_M	35_S	0.774	0.73
407_K	411_N	0.774	0.73
493_Y	497_L	0.774	0.73
434_W	445_L	0.773	0.73
505_H	508_F	0.773	0.73
25_T	28_K	0.772	0.73
100_E	104_E	0.769	0.73
121_T	124_V	0.768	0.73
22_Q	70_V	0.764	0.72
393_C	408_M	0.764	0.72
249_N	271_L	0.764	0.72
306_V	531_T	0.763	0.72
268_I	272_A	0.763	0.72
476_V	564_L	0.763	0.72
54_T	57_A	0.760	0.72
553_K	556_K	0.755	0.72
261_L	276_G	0.755	0.72
264_L	269_T	0.753	0.71
409_L	427_V	0.753	0.71
253_T	272_A	0.753	0.71
128_A	132_A	0.752	0.71
515_K	521_E	0.750	0.71
201_A	204_T	0.750	0.71
36_D	39_S	0.750	0.71
501_V	505_H	0.748	0.71
115_L	322_F	0.746	0.71
478_V	491_I	0.744	0.70
284_T	294_F	0.744	0.70
25_T	243_K	0.743	0.70
222_F	230_T	0.743	0.70
258_G	265_F	0.743	0.70
261_L	271_L	0.740	0.70
62_Y	218_L	0.740	0.70
510_R	518_K	0.739	0.70
92_G	245_P	0.739	0.70
102_L	107_G	0.737	0.70
478_V	481_A	0.736	0.70
283_E	291_S	0.736	0.70
209_P	213_I	0.734	0.69
376_L	381_V	0.734	0.69
141_H	543_F	0.734	0.69
114_L	118_Y	0.733	0.69
157_I	189_L	0.733	0.69
270_V	274_G	0.732	0.69
65_P	69_G	0.732	0.69
235_I	252_R	0.731	0.69
72_I	76_A	0.731	0.69
118_Y	121_T	0.730	0.69
459_E	464_V	0.729	0.69
492_H	498_S	0.729	0.69
29_A	35_S	0.727	0.69
515_K	520_W	0.727	0.69
447_F	450_I	0.726	0.69
445_L	448_F	0.726	0.69
545_K	552_A	0.726	0.69
414_G	417_I	0.725	0.68
130_T	133_I	0.725	0.68
39_S	314_A	0.724	0.68
310_I	313_L	0.722	0.68
36_D	42_A	0.721	0.68
77_L	80_S	0.721	0.68
26_K	248_R	0.721	0.68
557_E	564_L	0.720	0.68
252_R	267_G	0.720	0.68
261_L	264_L	0.720	0.68
551_E	560_S	0.720	0.68
40_S	125_S	0.720	0.68
30_L	34_S	0.719	0.68
311_L	317_T	0.719	0.68
531_T	535_S	0.719	0.68
316_N	321_A	0.719	0.68
122_V	222_F	0.715	0.67
262_A	445_L	0.714	0.67
183_V	187_V	0.713	0.67
413_C	522_E	0.713	0.67
426_F	429_K	0.713	0.67
202_H	205_S	0.712	0.67
67_A	71_L	0.711	0.67
76_A	413_C	0.708	0.67
182_L	263_I	0.708	0.67
490_S	493_Y	0.707	0.66
67_A	268_I	0.706	0.66
530_V	543_F	0.706	0.66
502_I	530_V	0.706	0.66
235_I	316_N	0.706	0.66
152_V	156_M	0.705	0.66
28_K	171_A	0.705	0.66
285_V	289_I	0.704	0.66
24_L	28_K	0.704	0.66
437_L	448_F	0.703	0.66
256_M	260_L	0.703	0.66
187_V	190_F	0.702	0.66
393_C	560_S	0.701	0.66
541_H	549_T	0.700	0.66
157_I	172_Y	0.698	0.65
492_H	496_S	0.698	0.65
54_T	58_A	0.698	0.65
324_Q	328_N	0.697	0.65
263_I	266_S	0.696	0.65
297_N	303_I	0.693	0.65
80_S	93_G	0.693	0.65
67_A	74_L	0.693	0.65
118_Y	321_A	0.692	0.65
438_I	449_A	0.691	0.65
262_A	268_I	0.690	0.65
489_K	496_S	0.689	0.64
225_G	323_P	0.687	0.64
148_A	368_G	0.687	0.64
299_F	303_I	0.686	0.64
40_S	81_Y	0.686	0.64
185_I	266_S	0.685	0.64
529_L	536_Y	0.685	0.64
121_T	385_F	0.685	0.64
269_T	274_G	0.683	0.64
40_S	119_I	0.682	0.64
397_I	408_M	0.682	0.64
495_K	498_S	0.681	0.64
430_F	433_V	0.679	0.63
530_V	549_T	0.679	0.63
462_R	465_D	0.679	0.63
80_S	414_G	0.678	0.63
148_A	363_I	0.677	0.63
117_D	380_G	0.677	0.63
386_T	418_S	0.676	0.63
184_L	290_A	0.676	0.63
137_F	357_F	0.675	0.63
205_S	208_T	0.675	0.63
20_G	23_K	0.672	0.63
248_R	253_T	0.672	0.63
344_D	347_G	0.672	0.63
257_M	273_Y	0.672	0.63
101_N	395_K	0.671	0.62
263_I	277_T	0.671	0.62
379_V	426_F	0.670	0.62
314_A	325_L	0.670	0.62
207_G	212_G	0.670	0.62
321_A	388_S	0.669	0.62
326_A	330_A	0.669	0.62
510_R	533_H	0.668	0.62
96_I	100_E	0.667	0.62
519_R	524_N	0.666	0.62
478_V	501_V	0.665	0.62
407_K	413_C	0.665	0.62
113_S	117_D	0.664	0.62
351_G	355_L	0.664	0.62
177_F	310_I	0.662	0.61
57_A	64_I	0.660	0.61
26_K	30_L	0.660	0.61
264_L	275_Y	0.659	0.61
81_Y	94_A	0.659	0.61
203_H	206_L	0.657	0.61
490_S	498_S	0.657	0.61
253_T	260_L	0.657	0.61
218_L	368_G	0.657	0.61
36_D	40_S	0.655	0.61
506_V	543_F	0.654	0.60
552_A	556_K	0.653	0.60
489_K	497_L	0.651	0.60
30_L	33_L	0.651	0.60
230_T	385_F	0.651	0.60
538_S	548_E	0.651	0.60
425_L	428_T	0.650	0.60
516_F	541_H	0.650	0.60
460_Q	463_I	0.649	0.60
258_G	272_A	0.649	0.60
185_I	267_G	0.649	0.60
416_L	420_M	0.648	0.60
551_E	557_E	0.646	0.60
550_V	565_F	0.645	0.59
118_Y	237_N	0.645	0.59
523_L	526_G	0.643	0.59
41_V	44_G	0.643	0.59
538_S	542_P	0.643	0.59
66_I	71_L	0.642	0.59
553_K	557_E	0.642	0.59
34_S	38_L	0.641	0.59
136_A	143_Y	0.641	0.59
255_A	259_I	0.640	0.59
144_H	369_Q	0.640	0.59
521_E	526_G	0.639	0.59
33_L	39_S	0.639	0.59
408_M	411_N	0.638	0.59
282_D	289_I	0.638	0.59
91_G	234_A	0.637	0.58
471_I	477_I	0.637	0.58
230_T	311_L	0.636	0.58
532_L	542_P	0.636	0.58
267_G	276_G	0.635	0.58
442_I	446_L	0.634	0.58
109_I	491_I	0.634	0.58
35_S	38_L	0.634	0.58
348_F	435_P	0.633	0.58
299_F	302_V	0.633	0.58
122_V	230_T	0.632	0.58
134_T	147_I	0.630	0.58
57_A	62_Y	0.629	0.57
94_A	238_A	0.626	0.57
264_L	276_G	0.626	0.57
230_T	234_A	0.626	0.57
149_I	182_L	0.625	0.57
526_G	550_V	0.625	0.57
500_Q	506_V	0.625	0.57
130_T	147_I	0.625	0.57
352_I	356_G	0.624	0.57
36_D	321_A	0.624	0.57
68_V	169_I	0.624	0.57
456_A	464_V	0.624	0.57
360_I	364_I	0.623	0.57
200_P	204_T	0.623	0.57
108_L	229_L	0.622	0.57
519_R	526_G	0.621	0.57
204_T	208_T	0.620	0.56
104_E	334_Y	0.619	0.56
539_L	548_E	0.619	0.56
137_F	479_P	0.619	0.56
43_Y	121_T	0.618	0.56
64_I	318_G	0.617	0.56
170_L	177_F	0.616	0.56
197_I	203_H	0.615	0.56
224_S	374_I	0.614	0.56
30_L	235_I	0.614	0.56
87_A	393_C	0.613	0.56
75_L	254_L	0.612	0.55
217_L	220_K	0.611	0.55
534_S	546_F	0.610	0.55
540_V	547_L	0.609	0.55
179_V	416_L	0.609	0.55
99_K	104_E	0.609	0.55
411_N	415_A	0.607	0.55
468_P	472_K	0.606	0.55
416_L	427_V	0.605	0.55
270_V	273_Y	0.604	0.54
207_G	210_V	0.604	0.54
453_H	462_R	0.603	0.54
286_V	291_S	0.603	0.54
147_I	154_V	0.601	0.54
230_T	237_N	0.600	0.54
532_L	545_K	0.598	0.54
167_A	320_S	0.598	0.54
32_M	170_L	0.598	0.54
325_L	381_V	0.598	0.54
423_S	435_P	0.598	0.54
154_V	186_A	0.594	0.53
54_T	280_K	0.594	0.53
280_K	283_E	0.593	0.53
155_I	229_L	0.592	0.53
74_L	77_L	0.592	0.53
483_V	491_I	0.590	0.53
311_L	377_Y	0.589	0.53
42_A	177_F	0.589	0.53
179_V	443_V	0.588	0.53
154_V	214_T	0.588	0.53
264_L	273_Y	0.588	0.53
426_F	430_F	0.587	0.52
120_L	125_S	0.587	0.52
108_L	112_G	0.587	0.52
550_V	557_E	0.586	0.52
503_A	508_F	0.585	0.52
273_Y	276_G	0.585	0.52
440_M	443_V	0.585	0.52
550_V	553_K	0.581	0.52
195_G	199_Q	0.580	0.52
497_L	564_L	0.580	0.52
437_L	440_M	0.580	0.52
318_G	328_N	0.579	0.51
62_Y	65_P	0.579	0.51
457_V	463_I	0.578	0.51
410_I	427_V	0.578	0.51
272_A	276_G	0.577	0.51
233_E	321_A	0.576	0.51
182_L	214_T	0.576	0.51
508_F	556_K	0.575	0.51
143_Y	150_F	0.575	0.51
478_V	494_A	0.575	0.51
160_L	353_I	0.575	0.51
262_A	267_G	0.574	0.51
111_G	170_L	0.574	0.51
287_S	520_W	0.572	0.51
125_S	325_L	0.570	0.50
457_V	460_Q	0.569	0.50
18_A	21_E	0.569	0.50
437_L	456_A	0.568	0.50
80_S	83_Q	0.568	0.50
257_M	268_I	0.567	0.50
77_L	389_Q	0.567	0.50
550_V	567_Q	0.566	0.50
468_P	471_I	0.566	0.50
484_T	487_V	0.566	0.50
35_S	39_S	0.565	0.50
173_P	355_L	0.565	0.50
251_A	262_A	0.564	0.50
236_S	245_P	0.563	0.49
501_V	508_F	0.562	0.49
228_A	381_V	0.561	0.49
535_S	547_L	0.560	0.49
454_Y	461_L	0.559	0.49
556_K	561_V	0.559	0.49
34_S	384_P	0.559	0.49
195_G	200_P	0.559	0.49
150_F	412_S	0.559	0.49
496_S	509_D	0.559	0.49
59_A	218_L	0.558	0.49
253_T	277_T	0.558	0.49
164_S	167_A	0.557	0.49
170_L	313_L	0.557	0.49
204_T	207_G	0.556	0.49
517_E	536_Y	0.556	0.49
190_F	361_V	0.556	0.49
490_S	564_L	0.555	0.48
125_S	317_T	0.555	0.48
421_V	428_T	0.555	0.48
498_S	501_V	0.554	0.48
532_L	541_H	0.554	0.48
150_F	420_M	0.553	0.48
408_M	425_L	0.552	0.48
121_T	230_T	0.552	0.48
39_S	42_A	0.551	0.48
458_G	462_R	0.549	0.48
136_A	176_L	0.549	0.48
490_S	494_A	0.549	0.48
253_T	261_L	0.547	0.47
505_H	531_T	0.547	0.47
339_F	354_F	0.546	0.47
247_A	440_M	0.546	0.47
408_M	415_A	0.544	0.47
305_G	365_L	0.544	0.47
221_A	224_S	0.542	0.47
68_V	179_V	0.541	0.47
261_L	269_T	0.541	0.47
137_F	330_A	0.540	0.47
160_L	352_I	0.538	0.46
396_W	411_N	0.538	0.46
445_L	452_N	0.536	0.46
481_A	489_K	0.536	0.46
258_G	303_I	0.536	0.46
545_K	548_E	0.535	0.46
234_A	237_N	0.535	0.46
65_P	74_L	0.535	0.46
537_R	542_P	0.534	0.46
23_K	329_L	0.533	0.46
415_A	424_I	0.533	0.46
253_T	262_A	0.532	0.46
116_V	177_F	0.532	0.46
390_T	394_M	0.531	0.46
494_A	504_V	0.530	0.45
120_L	376_L	0.529	0.45
530_V	542_P	0.529	0.45
301_Y	305_G	0.529	0.45
168_S	172_Y	0.527	0.45
528_R	534_S	0.527	0.45
154_V	169_I	0.526	0.45
190_F	195_G	0.526	0.45
74_L	318_G	0.526	0.45
190_F	527_V	0.525	0.45
179_V	244_N	0.525	0.45
153_L	416_L	0.524	0.45
73_L	144_H	0.523	0.45
475_V	480_V	0.523	0.45
42_A	52_L	0.522	0.44
36_D	377_Y	0.521	0.44
39_S	45_T	0.520	0.44
291_S	296_R	0.520	0.44
261_L	273_Y	0.520	0.44
534_S	537_R	0.520	0.44
376_L	479_P	0.519	0.44
467_E	565_F	0.519	0.44
365_L	369_Q	0.518	0.44
146_P	511_E	0.518	0.44
258_G	264_L	0.517	0.44
54_T	60_F	0.517	0.44
283_E	292_E	0.517	0.44
541_H	560_S	0.516	0.44
153_L	157_I	0.516	0.44
458_G	461_L	0.516	0.44
561_V	567_Q	0.516	0.44
257_M	269_T	0.515	0.44
530_V	538_S	0.515	0.44
533_H	541_H	0.514	0.43
487_V	490_S	0.514	0.43
382_F	391_G	0.513	0.43
518_K	521_E	0.513	0.43
516_F	539_L	0.512	0.43
36_D	234_A	0.512	0.43
29_A	36_D	0.512	0.43
79_L	254_L	0.511	0.43
491_I	527_V	0.511	0.43
29_A	32_M	0.509	0.43
491_I	496_S	0.508	0.43
37_A	44_G	0.508	0.43
158_L	163_L	0.508	0.43
311_L	376_L	0.508	0.43
126_I	152_V	0.508	0.43
212_G	420_M	0.508	0.43
90_Q	98_S	0.507	0.43
235_I	253_T	0.506	0.43
416_L	445_L	0.506	0.43
258_G	277_T	0.506	0.43
337_R	350_N	0.505	0.42
284_T	287_S	0.505	0.42
542_P	569_I	0.505	0.42
179_V	511_E	0.504	0.42
235_I	238_A	0.503	0.42
476_V	497_L	0.503	0.42
118_Y	238_A	0.502	0.42
249_N	272_A	0.502	0.42
469_E	472_K	0.501	0.42
357_F	518_K	0.501	0.42
121_T	311_L	0.501	0.42
504_V	543_F	0.500	0.42
493_Y	496_S	0.500	0.42

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.682	100	0.542	Contact Map
3giaA	1	0.6936	100	0.561	Contact Map
4djkA	2	0.6804	100	0.578	Contact Map
3g40A	2	0.1944	99.3	0.886	Contact Map
2jlnA	1	0.71	98.4	0.916	Contact Map
4wgvA	2	0.6063	98.4	0.917	Contact Map
3dh4A	3	0.743	98.1	0.923	Contact Map
2xq2A	2	0.7611	98	0.926	Contact Map
4xp4A	1	0.7183	97.6	0.932	Contact Map
2a65A	2	0.6787	97.1	0.938	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0147 seconds.