GREMLIN Database
YDAO - Uncharacterized amino acid permease YdaO
UniProt: P96589 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 607 (545)
Sequences: 2467 (1672)
Seq/√Len: 71.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
152_V363_I5.3711.00
95_Y332_D5.1951.00
451_K455_T5.1291.00
149_I360_I4.5411.00
390_T415_A3.8551.00
31_A259_I3.7441.00
501_V504_V3.6031.00
156_M356_G3.5881.00
121_T125_S3.4631.00
353_I357_F3.4401.00
56_S60_F3.3861.00
180_A302_V3.3741.00
143_Y146_P3.3321.00
342_R349_S2.9811.00
267_G271_L2.9581.00
125_S314_A2.8651.00
249_N253_T2.8181.00
286_V290_A2.8161.00
264_L267_G2.8111.00
342_R348_F2.7781.00
265_F269_T2.7751.00
60_F272_A2.7591.00
284_T290_A2.6681.00
258_G262_A2.5851.00
211_A214_T2.4861.00
149_I153_L2.3571.00
99_K107_G2.3381.00
283_E286_V2.3141.00
186_A190_F2.3101.00
436_V441_P2.3071.00
516_F520_W2.2841.00
68_V72_I2.2771.00
284_T288_Q2.2721.00
343_G349_S2.2611.00
159_N316_N2.2531.00
515_K518_K2.2371.00
247_A251_A2.2221.00
252_R256_M2.2211.00
536_Y542_P2.2141.00
343_G348_F2.2101.00
434_W438_I2.2061.00
414_G418_S2.1921.00
493_Y562_M2.1891.00
344_D349_S2.1741.00
200_P203_H2.1571.00
153_L360_I2.1541.00
409_L413_C2.1421.00
419_F423_S2.1081.00
386_T419_F2.1021.00
257_M264_L2.0861.00
122_V359_S2.0821.00
290_A294_F2.0801.00
57_A60_F2.0621.00
288_Q293_T2.0591.00
543_F547_L2.0551.00
210_V214_T2.0091.00
250_A253_T2.0041.00
410_I413_C2.0011.00
519_R522_E1.9821.00
346_L349_S1.9811.00
410_I414_G1.9791.00
34_S37_A1.9771.00
92_G95_Y1.9651.00
23_K246_P1.9261.00
407_K410_I1.9231.00
278_A282_D1.9171.00
409_L412_S1.9031.00
262_A266_S1.8671.00
26_K29_A1.8271.00
150_F154_V1.8171.00
549_T553_K1.8041.00
411_N414_G1.7991.00
394_M398_K1.7621.00
520_W523_L1.7571.00
285_V288_Q1.7551.00
483_V516_F1.7481.00
513_E517_E1.7471.00
514_K517_E1.7171.00
180_A303_I1.7091.00
287_S300_Y1.7031.00
140_L143_Y1.7011.00
447_F451_K1.6961.00
154_V158_L1.6941.00
205_S209_P1.6901.00
514_K518_K1.6801.00
199_Q202_H1.6791.00
190_F194_T1.6791.00
176_L306_V1.6781.00
249_N252_R1.6741.00
250_A267_G1.6731.00
393_C412_S1.6561.00
253_T268_I1.6541.00
189_L193_M1.6450.99
435_P438_I1.6360.99
149_I364_I1.6330.99
285_V290_A1.6310.99
111_G329_L1.6270.99
39_S377_Y1.6260.99
249_N254_L1.6230.99
518_K522_E1.6220.99
125_S318_G1.6200.99
326_A335_M1.6170.99
182_L186_A1.6050.99
264_L268_I1.6040.99
83_Q87_A1.5980.99
375_P378_A1.5850.99
206_L209_P1.5780.99
400_K404_W1.5710.99
188_G270_V1.5590.99
408_M414_G1.5570.99
437_L441_P1.5530.99
258_G276_G1.5490.99
342_R347_G1.5410.99
250_A254_L1.5260.99
84_I388_S1.5120.99
412_S416_L1.5060.99
125_S381_V1.4840.99
115_L326_A1.4840.99
492_H497_L1.4830.99
343_G346_L1.4780.99
253_T257_M1.4750.99
268_I271_L1.4690.99
121_T377_Y1.4640.99
517_E521_E1.4570.99
151_L312_V1.4530.99
481_A487_V1.4520.99
237_N321_A1.4400.99
345_R349_S1.4320.99
105_K448_F1.4310.99
253_T256_M1.4200.98
415_A418_S1.4000.98
34_S42_A1.3910.98
126_I315_A1.3910.98
475_V479_P1.3890.98
43_Y125_S1.3850.98
145_V363_I1.3810.98
45_T269_T1.3780.98
56_S59_A1.3770.98
40_S43_Y1.3760.98
39_S121_T1.3750.98
127_S363_I1.3720.98
178_V182_L1.3660.98
133_I147_I1.3640.98
413_C416_L1.3460.98
517_E523_L1.3460.98
260_L264_L1.3460.98
284_T289_I1.3440.98
542_P546_F1.3420.98
83_Q396_W1.3400.98
510_R513_E1.3320.98
464_V467_E1.3290.98
185_I188_G1.3070.97
491_I494_A1.3030.97
286_V289_I1.2970.97
258_G267_G1.2960.97
254_L258_G1.2960.97
37_A42_A1.2950.97
481_A484_T1.2940.97
197_I200_P1.2820.97
84_I321_A1.2790.97
254_L267_G1.2730.97
443_V447_F1.2710.97
134_T144_H1.2710.97
70_V73_L1.2650.97
474_T493_Y1.2610.97
446_L450_I1.2590.97
104_E107_G1.2510.97
474_T562_M1.2470.97
403_G406_G1.2420.96
175_Y179_V1.2400.96
252_R264_L1.2370.96
480_V487_V1.2360.96
267_G270_V1.2350.96
265_F271_L1.2340.96
490_S497_L1.2340.96
285_V295_G1.2310.96
269_T273_Y1.2260.96
132_A304_Q1.2250.96
264_L277_T1.2150.96
33_L44_G1.2110.96
519_R523_L1.2050.96
267_G275_Y1.1980.96
492_H495_K1.1980.96
177_F314_A1.1960.96
117_D120_L1.1950.96
450_I453_H1.1860.95
253_T264_L1.1820.95
475_V500_Q1.1820.95
459_E463_I1.1780.95
234_A317_T1.1760.95
132_A307_T1.1730.95
322_F326_A1.1730.95
249_N264_L1.1720.95
414_G425_L1.1720.95
66_I69_G1.1680.95
283_E287_S1.1670.95
509_D512_Q1.1650.95
422_L426_F1.1620.95
125_S377_Y1.1590.95
90_Q96_I1.1580.95
102_L106_P1.1550.95
345_R348_F1.1510.95
435_P439_F1.1440.94
105_K444_V1.1440.94
36_D43_Y1.1410.94
122_V152_V1.1410.94
271_L276_G1.1400.94
94_A233_E1.1370.94
547_L561_V1.1370.94
489_K492_H1.1360.94
179_V183_V1.1360.94
33_L238_A1.1360.94
78_I258_G1.1340.94
494_A498_S1.1320.94
242_F249_N1.1320.94
127_S373_L1.1310.94
208_T213_I1.1260.94
333_Q337_R1.1230.94
350_N353_I1.1170.94
249_N257_M1.1160.94
141_H144_H1.1130.94
74_L232_V1.1110.94
183_V299_F1.1090.93
497_L501_V1.1070.93
266_S269_T1.1040.93
209_P212_G1.0960.93
475_V502_I1.0930.93
71_L74_L1.0910.93
181_L264_L1.0880.93
530_V551_E1.0820.93
540_V544_D1.0810.93
551_E555_K1.0780.92
86_Y247_A1.0750.92
477_I550_V1.0720.92
38_L42_A1.0690.92
248_R252_R1.0690.92
445_L449_A1.0680.92
495_K526_G1.0640.92
278_A281_P1.0610.92
121_T314_A1.0590.92
136_A139_A1.0590.92
95_Y231_G1.0590.92
249_N267_G1.0590.92
477_I480_V1.0570.92
449_A452_N1.0490.91
518_K524_N1.0450.91
350_N354_F1.0390.91
408_M412_S1.0350.91
46_E131_D1.0290.91
64_I68_V1.0280.91
344_D348_F1.0260.90
444_V448_F1.0260.90
125_S311_L1.0260.90
288_Q294_F1.0230.90
512_Q522_E1.0230.90
260_L267_G1.0210.90
415_A419_F1.0210.90
209_P214_T1.0190.90
162_G231_G1.0170.90
493_Y498_S1.0170.90
459_E462_R1.0140.90
438_I441_P1.0100.90
179_V302_V1.0090.90
532_L549_T1.0080.90
314_A381_V1.0080.90
254_L271_L1.0040.89
26_K33_L1.0040.89
310_I314_A1.0030.89
538_S550_V0.9990.89
551_E556_K0.9950.89
253_T271_L0.9930.89
434_W437_L0.9900.89
323_P351_G0.9850.89
170_L174_V0.9830.88
314_A318_G0.9800.88
133_I308_S0.9790.88
515_K519_R0.9740.88
241_A324_Q0.9720.88
510_R514_K0.9710.88
264_L271_L0.9700.88
61_W65_P0.9700.88
285_V293_T0.9700.88
44_G177_F0.9670.88
290_A295_G0.9630.87
126_I151_L0.9610.87
462_R466_K0.9600.87
543_F561_V0.9590.87
40_S44_G0.9550.87
357_F361_V0.9550.87
68_V75_L0.9550.87
319_F322_F0.9510.87
441_P445_L0.9510.87
36_D317_T0.9480.87
130_T383_I0.9460.87
298_V353_I0.9450.86
37_A83_Q0.9440.86
261_L267_G0.9440.86
288_Q291_S0.9420.86
524_N527_V0.9420.86
514_K522_E0.9390.86
130_T151_L0.9390.86
283_E293_T0.9350.86
289_I294_F0.9340.86
93_G162_G0.9310.86
526_G548_E0.9310.86
479_P543_F0.9310.86
502_I505_H0.9300.86
263_I267_G0.9300.86
507_S513_E0.9290.85
509_D513_E0.9270.85
545_K549_T0.9260.85
264_L272_A0.9250.85
226_C313_L0.9230.85
84_I324_Q0.9180.85
500_Q507_S0.9150.85
256_M264_L0.9140.85
117_D381_V0.9080.84
503_A506_V0.9060.84
68_V71_L0.9030.84
287_S290_A0.9030.84
168_S321_A0.9030.84
533_H553_K0.9000.84
29_A38_L0.9000.84
80_S87_A0.9000.84
411_N418_S0.8980.84
103_G107_G0.8970.83
566_P569_I0.8960.83
86_Y251_A0.8960.83
433_V437_L0.8950.83
174_V316_N0.8940.83
81_Y377_Y0.8920.83
36_D44_G0.8910.83
170_L321_A0.8910.83
129_G151_L0.8910.83
438_I442_I0.8860.83
530_V533_H0.8850.83
146_P150_F0.8850.83
131_D284_T0.8800.82
29_A235_I0.8780.82
410_I416_L0.8770.82
214_T269_T0.8760.82
29_A33_L0.8750.82
134_T140_L0.8750.82
255_A258_G0.8740.82
325_L384_P0.8730.82
54_T451_K0.8720.82
43_Y81_Y0.8680.81
267_G272_A0.8680.81
442_I445_L0.8680.81
125_S385_F0.8680.81
304_Q307_T0.8670.81
253_T267_G0.8670.81
534_S542_P0.8670.81
516_F519_R0.8660.81
197_I201_A0.8660.81
458_G463_I0.8590.81
436_V439_F0.8580.81
272_A277_T0.8520.80
170_L317_T0.8520.80
176_L180_A0.8510.80
115_L355_L0.8510.80
78_I257_M0.8500.80
33_L235_I0.8500.80
198_D201_A0.8490.80
283_E288_Q0.8480.80
330_A340_T0.8430.79
257_M267_G0.8380.79
276_G279_P0.8370.79
80_S389_Q0.8360.79
446_L449_A0.8350.79
502_I507_S0.8350.79
178_V417_I0.8340.79
250_A264_L0.8340.79
127_S148_A0.8310.78
489_K493_Y0.8290.78
199_Q203_H0.8290.78
88_Y101_N0.8260.78
32_M174_V0.8250.78
361_V365_L0.8240.78
24_L29_A0.8230.78
39_S43_Y0.8230.78
517_E520_W0.8210.78
549_T552_A0.8200.78
27_L31_A0.8200.78
538_S541_H0.8190.77
152_V360_I0.8190.77
421_V425_L0.8170.77
248_R251_A0.8160.77
156_M353_I0.8140.77
257_M261_L0.8130.77
451_K518_K0.8120.77
338_M350_N0.8110.77
567_Q570_T0.8040.76
59_A62_Y0.8000.76
267_G277_T0.7960.75
119_I358_A0.7960.75
425_L430_F0.7940.75
60_F63_S0.7870.75
402_K406_G0.7870.75
257_M276_G0.7830.74
552_A555_K0.7810.74
459_E466_K0.7810.74
318_G372_H0.7800.74
38_L43_Y0.7800.74
236_S388_S0.7800.74
505_H547_L0.7790.74
312_V330_A0.7750.73
114_L380_G0.7740.73
32_M35_S0.7740.73
407_K411_N0.7740.73
493_Y497_L0.7740.73
434_W445_L0.7730.73
505_H508_F0.7730.73
25_T28_K0.7720.73
100_E104_E0.7690.73
121_T124_V0.7680.73
22_Q70_V0.7640.72
393_C408_M0.7640.72
249_N271_L0.7640.72
306_V531_T0.7630.72
268_I272_A0.7630.72
476_V564_L0.7630.72
54_T57_A0.7600.72
553_K556_K0.7550.72
261_L276_G0.7550.72
264_L269_T0.7530.71
409_L427_V0.7530.71
253_T272_A0.7530.71
128_A132_A0.7520.71
515_K521_E0.7500.71
201_A204_T0.7500.71
36_D39_S0.7500.71
501_V505_H0.7480.71
115_L322_F0.7460.71
478_V491_I0.7440.70
284_T294_F0.7440.70
25_T243_K0.7430.70
222_F230_T0.7430.70
258_G265_F0.7430.70
261_L271_L0.7400.70
62_Y218_L0.7400.70
510_R518_K0.7390.70
92_G245_P0.7390.70
102_L107_G0.7370.70
478_V481_A0.7360.70
283_E291_S0.7360.70
209_P213_I0.7340.69
376_L381_V0.7340.69
141_H543_F0.7340.69
114_L118_Y0.7330.69
157_I189_L0.7330.69
270_V274_G0.7320.69
65_P69_G0.7320.69
235_I252_R0.7310.69
72_I76_A0.7310.69
118_Y121_T0.7300.69
459_E464_V0.7290.69
492_H498_S0.7290.69
29_A35_S0.7270.69
515_K520_W0.7270.69
447_F450_I0.7260.69
445_L448_F0.7260.69
545_K552_A0.7260.69
414_G417_I0.7250.68
130_T133_I0.7250.68
39_S314_A0.7240.68
310_I313_L0.7220.68
36_D42_A0.7210.68
77_L80_S0.7210.68
26_K248_R0.7210.68
557_E564_L0.7200.68
252_R267_G0.7200.68
261_L264_L0.7200.68
551_E560_S0.7200.68
40_S125_S0.7200.68
30_L34_S0.7190.68
311_L317_T0.7190.68
531_T535_S0.7190.68
316_N321_A0.7190.68
122_V222_F0.7150.67
262_A445_L0.7140.67
183_V187_V0.7130.67
413_C522_E0.7130.67
426_F429_K0.7130.67
202_H205_S0.7120.67
67_A71_L0.7110.67
76_A413_C0.7080.67
182_L263_I0.7080.67
490_S493_Y0.7070.66
67_A268_I0.7060.66
530_V543_F0.7060.66
502_I530_V0.7060.66
235_I316_N0.7060.66
152_V156_M0.7050.66
28_K171_A0.7050.66
285_V289_I0.7040.66
24_L28_K0.7040.66
437_L448_F0.7030.66
256_M260_L0.7030.66
187_V190_F0.7020.66
393_C560_S0.7010.66
541_H549_T0.7000.66
157_I172_Y0.6980.65
492_H496_S0.6980.65
54_T58_A0.6980.65
324_Q328_N0.6970.65
263_I266_S0.6960.65
297_N303_I0.6930.65
80_S93_G0.6930.65
67_A74_L0.6930.65
118_Y321_A0.6920.65
438_I449_A0.6910.65
262_A268_I0.6900.65
489_K496_S0.6890.64
225_G323_P0.6870.64
148_A368_G0.6870.64
299_F303_I0.6860.64
40_S81_Y0.6860.64
185_I266_S0.6850.64
529_L536_Y0.6850.64
121_T385_F0.6850.64
269_T274_G0.6830.64
40_S119_I0.6820.64
397_I408_M0.6820.64
495_K498_S0.6810.64
430_F433_V0.6790.63
530_V549_T0.6790.63
462_R465_D0.6790.63
80_S414_G0.6780.63
148_A363_I0.6770.63
117_D380_G0.6770.63
386_T418_S0.6760.63
184_L290_A0.6760.63
137_F357_F0.6750.63
205_S208_T0.6750.63
20_G23_K0.6720.63
248_R253_T0.6720.63
344_D347_G0.6720.63
257_M273_Y0.6720.63
101_N395_K0.6710.62
263_I277_T0.6710.62
379_V426_F0.6700.62
314_A325_L0.6700.62
207_G212_G0.6700.62
321_A388_S0.6690.62
326_A330_A0.6690.62
510_R533_H0.6680.62
96_I100_E0.6670.62
519_R524_N0.6660.62
478_V501_V0.6650.62
407_K413_C0.6650.62
113_S117_D0.6640.62
351_G355_L0.6640.62
177_F310_I0.6620.61
57_A64_I0.6600.61
26_K30_L0.6600.61
264_L275_Y0.6590.61
81_Y94_A0.6590.61
203_H206_L0.6570.61
490_S498_S0.6570.61
253_T260_L0.6570.61
218_L368_G0.6570.61
36_D40_S0.6550.61
506_V543_F0.6540.60
552_A556_K0.6530.60
489_K497_L0.6510.60
30_L33_L0.6510.60
230_T385_F0.6510.60
538_S548_E0.6510.60
425_L428_T0.6500.60
516_F541_H0.6500.60
460_Q463_I0.6490.60
258_G272_A0.6490.60
185_I267_G0.6490.60
416_L420_M0.6480.60
551_E557_E0.6460.60
550_V565_F0.6450.59
118_Y237_N0.6450.59
523_L526_G0.6430.59
41_V44_G0.6430.59
538_S542_P0.6430.59
66_I71_L0.6420.59
553_K557_E0.6420.59
34_S38_L0.6410.59
136_A143_Y0.6410.59
255_A259_I0.6400.59
144_H369_Q0.6400.59
521_E526_G0.6390.59
33_L39_S0.6390.59
408_M411_N0.6380.59
282_D289_I0.6380.59
91_G234_A0.6370.58
471_I477_I0.6370.58
230_T311_L0.6360.58
532_L542_P0.6360.58
267_G276_G0.6350.58
442_I446_L0.6340.58
109_I491_I0.6340.58
35_S38_L0.6340.58
348_F435_P0.6330.58
299_F302_V0.6330.58
122_V230_T0.6320.58
134_T147_I0.6300.58
57_A62_Y0.6290.57
94_A238_A0.6260.57
264_L276_G0.6260.57
230_T234_A0.6260.57
149_I182_L0.6250.57
526_G550_V0.6250.57
500_Q506_V0.6250.57
130_T147_I0.6250.57
352_I356_G0.6240.57
36_D321_A0.6240.57
68_V169_I0.6240.57
456_A464_V0.6240.57
360_I364_I0.6230.57
200_P204_T0.6230.57
108_L229_L0.6220.57
519_R526_G0.6210.57
204_T208_T0.6200.56
104_E334_Y0.6190.56
539_L548_E0.6190.56
137_F479_P0.6190.56
43_Y121_T0.6180.56
64_I318_G0.6170.56
170_L177_F0.6160.56
197_I203_H0.6150.56
224_S374_I0.6140.56
30_L235_I0.6140.56
87_A393_C0.6130.56
75_L254_L0.6120.55
217_L220_K0.6110.55
534_S546_F0.6100.55
540_V547_L0.6090.55
179_V416_L0.6090.55
99_K104_E0.6090.55
411_N415_A0.6070.55
468_P472_K0.6060.55
416_L427_V0.6050.55
270_V273_Y0.6040.54
207_G210_V0.6040.54
453_H462_R0.6030.54
286_V291_S0.6030.54
147_I154_V0.6010.54
230_T237_N0.6000.54
532_L545_K0.5980.54
167_A320_S0.5980.54
32_M170_L0.5980.54
325_L381_V0.5980.54
423_S435_P0.5980.54
154_V186_A0.5940.53
54_T280_K0.5940.53
280_K283_E0.5930.53
155_I229_L0.5920.53
74_L77_L0.5920.53
483_V491_I0.5900.53
311_L377_Y0.5890.53
42_A177_F0.5890.53
179_V443_V0.5880.53
154_V214_T0.5880.53
264_L273_Y0.5880.53
426_F430_F0.5870.52
120_L125_S0.5870.52
108_L112_G0.5870.52
550_V557_E0.5860.52
503_A508_F0.5850.52
273_Y276_G0.5850.52
440_M443_V0.5850.52
550_V553_K0.5810.52
195_G199_Q0.5800.52
497_L564_L0.5800.52
437_L440_M0.5800.52
318_G328_N0.5790.51
62_Y65_P0.5790.51
457_V463_I0.5780.51
410_I427_V0.5780.51
272_A276_G0.5770.51
233_E321_A0.5760.51
182_L214_T0.5760.51
508_F556_K0.5750.51
143_Y150_F0.5750.51
478_V494_A0.5750.51
160_L353_I0.5750.51
262_A267_G0.5740.51
111_G170_L0.5740.51
287_S520_W0.5720.51
125_S325_L0.5700.50
457_V460_Q0.5690.50
18_A21_E0.5690.50
437_L456_A0.5680.50
80_S83_Q0.5680.50
257_M268_I0.5670.50
77_L389_Q0.5670.50
550_V567_Q0.5660.50
468_P471_I0.5660.50
484_T487_V0.5660.50
35_S39_S0.5650.50
173_P355_L0.5650.50
251_A262_A0.5640.50
236_S245_P0.5630.49
501_V508_F0.5620.49
228_A381_V0.5610.49
535_S547_L0.5600.49
454_Y461_L0.5590.49
556_K561_V0.5590.49
34_S384_P0.5590.49
195_G200_P0.5590.49
150_F412_S0.5590.49
496_S509_D0.5590.49
59_A218_L0.5580.49
253_T277_T0.5580.49
164_S167_A0.5570.49
170_L313_L0.5570.49
204_T207_G0.5560.49
517_E536_Y0.5560.49
190_F361_V0.5560.49
490_S564_L0.5550.48
125_S317_T0.5550.48
421_V428_T0.5550.48
498_S501_V0.5540.48
532_L541_H0.5540.48
150_F420_M0.5530.48
408_M425_L0.5520.48
121_T230_T0.5520.48
39_S42_A0.5510.48
458_G462_R0.5490.48
136_A176_L0.5490.48
490_S494_A0.5490.48
253_T261_L0.5470.47
505_H531_T0.5470.47
339_F354_F0.5460.47
247_A440_M0.5460.47
408_M415_A0.5440.47
305_G365_L0.5440.47
221_A224_S0.5420.47
68_V179_V0.5410.47
261_L269_T0.5410.47
137_F330_A0.5400.47
160_L352_I0.5380.46
396_W411_N0.5380.46
445_L452_N0.5360.46
481_A489_K0.5360.46
258_G303_I0.5360.46
545_K548_E0.5350.46
234_A237_N0.5350.46
65_P74_L0.5350.46
537_R542_P0.5340.46
23_K329_L0.5330.46
415_A424_I0.5330.46
253_T262_A0.5320.46
116_V177_F0.5320.46
390_T394_M0.5310.46
494_A504_V0.5300.45
120_L376_L0.5290.45
530_V542_P0.5290.45
301_Y305_G0.5290.45
168_S172_Y0.5270.45
528_R534_S0.5270.45
154_V169_I0.5260.45
190_F195_G0.5260.45
74_L318_G0.5260.45
190_F527_V0.5250.45
179_V244_N0.5250.45
153_L416_L0.5240.45
73_L144_H0.5230.45
475_V480_V0.5230.45
42_A52_L0.5220.44
36_D377_Y0.5210.44
39_S45_T0.5200.44
291_S296_R0.5200.44
261_L273_Y0.5200.44
534_S537_R0.5200.44
376_L479_P0.5190.44
467_E565_F0.5190.44
365_L369_Q0.5180.44
146_P511_E0.5180.44
258_G264_L0.5170.44
54_T60_F0.5170.44
283_E292_E0.5170.44
541_H560_S0.5160.44
153_L157_I0.5160.44
458_G461_L0.5160.44
561_V567_Q0.5160.44
257_M269_T0.5150.44
530_V538_S0.5150.44
533_H541_H0.5140.43
487_V490_S0.5140.43
382_F391_G0.5130.43
518_K521_E0.5130.43
516_F539_L0.5120.43
36_D234_A0.5120.43
29_A36_D0.5120.43
79_L254_L0.5110.43
491_I527_V0.5110.43
29_A32_M0.5090.43
491_I496_S0.5080.43
37_A44_G0.5080.43
158_L163_L0.5080.43
311_L376_L0.5080.43
126_I152_V0.5080.43
212_G420_M0.5080.43
90_Q98_S0.5070.43
235_I253_T0.5060.43
416_L445_L0.5060.43
258_G277_T0.5060.43
337_R350_N0.5050.42
284_T287_S0.5050.42
542_P569_I0.5050.42
179_V511_E0.5040.42
235_I238_A0.5030.42
476_V497_L0.5030.42
118_Y238_A0.5020.42
249_N272_A0.5020.42
469_E472_K0.5010.42
357_F518_K0.5010.42
121_T311_L0.5010.42
504_V543_F0.5000.42
493_Y496_S0.5000.42
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3l1lA 2 0.682 100 0.542 Contact Map
3giaA 1 0.6936 100 0.561 Contact Map
4djkA 2 0.6804 100 0.578 Contact Map
3g40A 2 0.1944 99.3 0.886 Contact Map
2jlnA 1 0.71 98.4 0.916 Contact Map
4wgvA 2 0.6063 98.4 0.917 Contact Map
3dh4A 3 0.743 98.1 0.923 Contact Map
2xq2A 2 0.7611 98 0.926 Contact Map
4xp4A 1 0.7183 97.6 0.932 Contact Map
2a65A 2 0.6787 97.1 0.938 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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