GREMLIN Database
YDAF - Putative ribosomal N-acetyltransferase YdaF
UniProt: P96579 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 183 (167)
Sequences: 19949 (15263)
Seq/√Len: 1181.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
111_T147_R2.9011.00
132_I145_P2.8921.00
13_R73_L2.6831.00
13_R19_D2.6051.00
33_R102_K2.5131.00
153_E173_S2.4251.00
9_H112_A2.3681.00
94_A127_L2.3661.00
134_A142_R2.2881.00
84_L121_A2.2641.00
152_E155_K2.2601.00
134_A145_P2.1311.00
143_A146_E2.1241.00
7_N116_K2.1131.00
152_E170_V2.0881.00
7_N112_A2.0621.00
142_R146_E2.0141.00
119_T123_E1.9961.00
71_G78_L1.8661.00
96_I114_C1.8551.00
31_Q102_K1.8511.00
118_I130_V1.7921.00
128_N158_D1.7611.00
118_I150_F1.7461.00
155_K170_V1.7411.00
15_L71_G1.7361.00
22_R78_L1.7021.00
82_I113_A1.6881.00
114_C148_I1.6691.00
142_R152_E1.6501.00
54_I58_W1.6201.00
116_K119_T1.5891.00
136_V168_D1.5841.00
142_R170_V1.5521.00
146_E152_E1.5151.00
73_L76_G1.5081.00
101_A104_F1.4901.00
98_Y145_P1.4801.00
100_I110_I1.4721.00
5_K116_K1.4411.00
139_E142_R1.4381.00
17_P56_P1.4151.00
128_N166_H1.3941.00
111_T144_V1.3721.00
20_A52_E1.3681.00
79_C104_F1.3451.00
6_V11_T1.3321.00
121_A130_V1.3201.00
22_R77_S1.3011.00
11_T73_L1.3001.00
120_Y124_E1.2991.00
129_R173_S1.2941.00
136_V155_K1.2941.00
142_R172_Y1.2891.00
82_I117_L1.2861.00
161_Y166_H1.2841.00
72_L100_I1.2751.00
159_G169_L1.2521.00
72_L113_A1.2491.00
98_Y141_S1.2071.00
26_L101_A1.2001.00
156_A171_Y1.1931.00
110_I144_V1.1731.00
137_G167_H1.1691.00
77_S103_E1.1601.00
121_A125_L1.1591.00
7_N10_I1.1541.00
95_E133_C1.1511.00
33_R105_E1.1301.00
88_D91_N1.1281.00
33_R36_K1.1141.00
105_E140_K1.1141.00
20_A55_I1.1131.00
77_S104_F1.1121.00
81_M99_W1.0991.00
120_Y125_L1.0941.00
52_E56_P1.0761.00
5_K12_I1.0711.00
134_A172_Y1.0671.00
70_A117_L1.0591.00
26_L99_W1.0441.00
129_R153_E1.0431.00
93_K131_A1.0291.00
152_E172_Y1.0291.00
5_K120_Y1.0291.00
102_K105_E1.0281.00
132_I150_F1.0261.00
22_R25_E1.0191.00
21_E46_S1.0131.00
158_D168_D1.0121.00
118_I174_L1.0111.00
155_K168_D1.0091.00
141_S145_P1.0091.00
111_T115_R0.9851.00
145_P150_F0.9771.00
135_A167_H0.9751.00
53_T57_D0.9661.00
118_I148_I0.9661.00
144_V148_I0.9641.00
157_R168_D0.9631.00
70_A120_Y0.9531.00
11_T76_G0.9531.00
157_R173_S0.9511.00
73_L78_L0.9421.00
150_F174_L0.9311.00
17_P52_E0.9191.00
139_E143_A0.9091.00
106_G140_K0.9071.00
121_A127_L0.9051.00
19_D73_L0.9031.00
136_V170_V0.9021.00
34_L105_E0.8951.00
111_T148_I0.8951.00
115_R119_T0.8941.00
84_L117_L0.8911.00
10_I113_A0.8821.00
112_A116_K0.8751.00
17_P20_A0.8671.00
37_W135_A0.8661.00
92_R166_H0.8651.00
98_Y110_I0.8651.00
15_L81_M0.8631.00
10_I109_I0.8581.00
27_I99_W0.8501.00
115_R148_I0.8471.00
93_K129_R0.8471.00
129_R175_L0.8341.00
157_R175_L0.8341.00
20_A24_A0.8311.00
100_I109_I0.8271.00
156_A159_G0.8261.00
61_Q66_N0.8231.00
17_P59_R0.8201.00
21_E25_E0.8091.00
25_E77_S0.7961.00
93_K159_G0.7941.00
146_E172_Y0.7871.00
139_E146_E0.7861.00
25_E101_A0.7781.00
134_A141_S0.7771.00
104_F107_K0.7721.00
161_Y165_M0.7701.00
95_E131_A0.7701.00
161_Y164_G0.7691.00
53_T56_P0.7661.00
7_N12_I0.7641.00
8_E112_A0.7611.00
133_C156_A0.7611.00
153_E157_R0.7541.00
98_Y114_C0.7421.00
158_D166_H0.7411.00
106_G111_T0.7361.00
132_I141_S0.7361.00
47_A52_E0.7291.00
61_Q67_G0.7171.00
77_S101_A0.7171.00
114_C144_V0.7141.00
22_R101_A0.7081.00
45_S49_T0.7051.00
111_T140_K0.7041.00
24_A30_N0.7011.00
25_E103_E0.6981.00
143_A147_R0.6981.00
37_W137_G0.6951.00
13_R71_G0.6921.00
106_G143_A0.6921.00
9_H108_G0.6881.00
31_Q105_E0.6831.00
21_E47_A0.6821.00
26_L78_L0.6821.00
134_A170_V0.6821.00
110_I114_C0.6801.00
79_C109_I0.6791.00
14_L62_Y0.6751.00
55_I58_W0.6711.00
46_S49_T0.6691.00
109_I112_A0.6681.00
133_C169_L0.6661.00
137_G165_M0.6601.00
158_D175_L0.6561.00
72_L109_I0.6531.00
69_E83_S0.6511.00
74_Y109_I0.6481.00
98_Y144_V0.6481.00
94_A121_A0.6441.00
74_Y79_C0.6441.00
140_K143_A0.6371.00
41_A44_P0.6361.00
10_I112_A0.6341.00
145_P172_Y0.6111.00
82_I114_C0.6081.00
46_S52_E0.6061.00
47_A50_Y0.6061.00
35_G38_L0.6061.00
136_V142_R0.6031.00
72_L82_I0.6021.00
84_L94_A0.6021.00
162_V165_M0.5991.00
72_L80_G0.5961.00
34_L99_W0.5961.00
151_L157_R0.5931.00
58_W69_E0.5921.00
100_I105_E0.5901.00
40_F43_N0.5871.00
106_G144_V0.5841.00
129_R159_G0.5841.00
38_L99_W0.5791.00
21_E24_A0.5751.00
92_R128_N0.5751.00
13_R16_E0.5721.00
85_H95_E0.5711.00
78_L81_M0.5711.00
16_E19_D0.5711.00
43_N49_T0.5681.00
100_I104_F0.5681.00
162_V167_H0.5661.00
98_Y132_I0.5661.00
92_R161_Y0.5651.00
131_A156_A0.5621.00
148_I174_L0.5591.00
35_G42_E0.5511.00
114_C150_F0.5501.00
94_A130_V0.5501.00
31_Q101_A0.5461.00
45_S48_D0.5451.00
119_T124_E0.5431.00
133_C171_Y0.5411.00
22_R26_L0.5401.00
131_A159_G0.5381.00
132_I172_Y0.5341.00
15_L23_L0.5331.00
48_D52_E0.5311.00
57_D61_Q0.5251.00
23_L81_M0.5231.00
83_S97_G0.5231.00
32_Q36_K0.5221.00
8_E11_T0.5201.00
106_G147_R0.5151.00
24_A50_Y0.5131.00
100_I113_A0.5121.00
92_R126_E0.5121.00
55_I59_R0.5121.00
38_L41_A0.5111.00
31_Q35_G0.5081.00
62_Y68_I0.5071.00
118_I122_F0.5061.00
22_R73_L0.5041.00
96_I130_V0.5031.00
65_L68_I0.5011.00
160_L169_L0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1nslA 3 0.9727 100 0.278 Contact Map
2vzyA 3 0.8852 100 0.296 Contact Map
3pzjA 2 0.9508 100 0.303 Contact Map
3r9fA 1 0.9563 100 0.304 Contact Map
1yreA 2 0.9344 100 0.308 Contact Map
2z10A 2 0.9617 100 0.321 Contact Map
2fckA 2 0.9235 100 0.322 Contact Map
3igrA 2 0.9672 100 0.339 Contact Map
1s7kA 2 0.8579 100 0.343 Contact Map
4r9mA 5 0.918 100 0.348 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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