YDAB - BACSU - GREMLIN Contacts

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YDAB - Putative acyl--CoA ligase YdaB

UniProt:	P96575	Sequences: METLQHLILHDMPNSEEIEAVKSGDHTLTYKGYRKRINQLANAMLQKGIQKGDRVALLCKNGHPASTVMFAALEIGAVVVPVSWQLKPYEMTGILKASEPKAMFYGAEFKEILDEVLPELSSLCVTMETGTAYETSAEFEALFAGPDHLPETEMVSPDDTALLMFTSGTTGNPKRCMITHGGIYRYVKKSNSSIARMKGLRFLACHPIYHTSALICIMLGTFAETTFVFTKDQDPVHMLKVIEEEKIQTVMALPVFYTYLLEAWEKHQTDLSSLVILMTGGTKVPSSLISRYLDIGIPLAHGYGSTEAWGISTWTPDMGMDKAASAGKPVAGVKVKVEDPLTGEELPQGEIGEIVVHTPFLFKGYEDNPEATAKVLQNGWFRTGDSGYVDEDGFIFITGRYKDVIIYGGDNVYPDQVEEVIQQIPGILETAVVGIPDPLYGEKPKAFIVKNGGQRITEEDVIAFCKERLSAYKIPEVEFVNELPKNNLGKVKKDVLRNQAVHS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	503 (480)
Sequences:	72135 (52502)
Seq/√Len:	2396.4

ECOLI - ENTF ACSA FADK LCFA PRPE AAS CAIC ENTE MENE PAAK
BACSU - YDAB PPSE LCFB SRFAC LCFA ACSA YNGI DHBE MENE YTCI PPSB DLTA PPSC YHFT DHBF PKSJ PPSD PPSA SRFAA PKSN SRFAB
HALSA - Q9HRY8 Q9HSM3 Q9HQU8 Q9HQ43 Q9HNK0 Q9HQN8
SULSO - Q97UW7 Q97UX8 Q97YK9 Q97U22 Q97VT6 Q97WQ9 Q97VU7 Q97WQ0 Q97XW4 Q97UF6 Q97WK0 Q97V27 Q97WS5 Q980E4 Q97X52 Q97XW5 Q97VJ6 Q97WU3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
160_T	177_M	3.870	1.00
354_I	387_G	3.135	1.00
424_I	464_F	3.124	1.00
334_K	357_H	2.915	1.00
38_N	74_E	2.884	1.00
368_N	371_A	2.875	1.00
97_A	165_F	2.854	1.00
56_A	100_P	2.747	1.00
179_T	363_K	2.745	1.00
53_D	101_K	2.728	1.00
49_I	77_A	2.712	1.00
388_Y	396_F	2.699	1.00
34_R	74_E	2.696	1.00
22_K	226_T	2.553	1.00
353_E	382_R	2.487	1.00
406_I	411_N	2.432	1.00
201_R	226_T	2.424	1.00
19_E	27_T	2.377	1.00
429_E	485_K	2.362	1.00
99_E	367_D	2.330	1.00
43_A	47_K	2.328	1.00
54_R	80_V	2.312	1.00
422_Q	430_T	2.284	1.00
15_S	18_I	2.270	1.00
336_K	345_E	2.265	1.00
9_L	34_R	2.236	1.00
421_I	446_A	2.209	1.00
338_E	355_V	2.207	1.00
339_D	344_E	2.180	1.00
351_I	386_S	2.163	1.00
36_R	67_T	2.136	1.00
11_D	15_S	2.130	1.00
355_V	382_R	2.127	1.00
68_V	104_F	2.124	1.00
97_A	368_N	2.110	1.00
93_G	172_N	2.099	1.00
390_D	396_F	2.078	1.00
240_K	244_E	2.049	1.00
34_R	38_N	2.047	1.00
492_K	495_V	2.017	1.00
445_K	478_E	2.015	1.00
423_Q	468_R	2.014	1.00
156_S	159_D	2.003	1.00
200_L	275_V	1.994	1.00
371_A	374_K	1.992	1.00
403_D	493_K	1.988	1.00
72_A	77_A	1.978	1.00
325_S	396_F	1.924	1.00
200_L	248_Q	1.898	1.00
390_D	394_F	1.882	1.00
369_P	373_A	1.881	1.00
40_L	67_T	1.877	1.00
388_Y	398_T	1.860	1.00
51_K	159_D	1.855	1.00
336_K	355_V	1.850	1.00
339_D	342_T	1.832	1.00
286_S	290_S	1.829	1.00
92_T	96_K	1.826	1.00
22_K	27_T	1.825	1.00
17_E	31_K	1.795	1.00
45_L	75_I	1.756	1.00
50_Q	53_D	1.751	1.00
52_G	159_D	1.750	1.00
416_Q	473_K	1.730	1.00
37_I	74_E	1.729	1.00
389_V	395_I	1.725	1.00
495_V	498_N	1.693	1.00
22_K	245_E	1.688	1.00
351_I	398_T	1.678	1.00
428_L	451_N	1.678	1.00
10_H	14_N	1.669	1.00
418_E	432_V	1.666	1.00
228_V	247_I	1.664	1.00
31_K	35_K	1.659	1.00
407_Y	412_V	1.654	1.00
66_S	217_I	1.648	1.00
60_K	106_G	1.643	1.00
433_V	447_F	1.633	1.00
179_T	182_G	1.628	1.00
422_Q	429_E	1.627	1.00
348_Q	389_V	1.621	1.00
92_T	119_E	1.612	1.00
246_K	273_S	1.602	1.00
447_F	496_L	1.591	1.00
56_A	82_V	1.566	1.00
29_T	32_G	1.566	1.00
160_T	363_K	1.551	1.00
449_V	483_L	1.542	1.00
73_L	161_A	1.537	1.00
23_S	63_H	1.536	1.00
432_V	446_A	1.535	1.00
252_A	257_Y	1.524	1.00
28_L	67_T	1.522	1.00
370_E	374_K	1.512	1.00
11_D	14_N	1.501	1.00
337_V	387_G	1.499	1.00
237_H	240_K	1.496	1.00
165_F	175_R	1.491	1.00
426_G	460_D	1.490	1.00
54_R	78_V	1.489	1.00
191_N	223_A	1.488	1.00
347_P	350_E	1.486	1.00
464_F	468_R	1.484	1.00
448_I	479_F	1.481	1.00
312_S	356_V	1.477	1.00
420_V	468_R	1.475	1.00
16_E	31_K	1.471	1.00
457_T	460_D	1.462	1.00
9_L	74_E	1.460	1.00
38_N	42_N	1.457	1.00
55_V	72_A	1.457	1.00
447_F	497_R	1.446	1.00
18_I	199_G	1.442	1.00
158_D	181_G	1.438	1.00
290_S	294_D	1.431	1.00
12_M	34_R	1.429	1.00
220_G	225_T	1.429	1.00
322_K	392_D	1.428	1.00
98_S	165_F	1.427	1.00
243_E	269_T	1.427	1.00
43_A	142_L	1.425	1.00
203_L	247_I	1.424	1.00
450_K	479_F	1.422	1.00
19_E	22_K	1.421	1.00
19_E	226_T	1.420	1.00
387_G	397_I	1.419	1.00
163_L	366_E	1.418	1.00
436_P	442_E	1.414	1.00
192_S	331_A	1.414	1.00
255_V	282_T	1.411	1.00
182_G	309_W	1.398	1.00
305_S	381_F	1.391	1.00
177_M	366_E	1.388	1.00
486_N	492_K	1.384	1.00
339_D	346_L	1.380	1.00
28_L	63_H	1.365	1.00
177_M	364_G	1.365	1.00
298_P	316_P	1.364	1.00
200_L	249_T	1.364	1.00
95_L	100_P	1.359	1.00
56_A	95_L	1.348	1.00
340_P	401_Y	1.345	1.00
234_D	237_H	1.341	1.00
313_T	335_V	1.341	1.00
55_V	77_A	1.335	1.00
257_Y	277_L	1.335	1.00
448_I	477_V	1.332	1.00
197_M	200_L	1.331	1.00
201_R	228_V	1.330	1.00
20_A	33_Y	1.325	1.00
362_F	376_L	1.323	1.00
351_I	388_Y	1.323	1.00
80_V	98_S	1.321	1.00
101_K	124_C	1.321	1.00
462_I	477_V	1.315	1.00
357_H	380_W	1.314	1.00
335_V	356_V	1.312	1.00
386_S	401_Y	1.307	1.00
375_V	381_F	1.305	1.00
463_A	467_E	1.300	1.00
230_T	241_V	1.299	1.00
157_P	181_G	1.295	1.00
52_G	363_K	1.294	1.00
279_T	284_V	1.292	1.00
241_V	245_E	1.290	1.00
322_K	394_F	1.289	1.00
40_L	71_A	1.284	1.00
429_E	449_V	1.275	1.00
138_E	141_A	1.268	1.00
405_I	414_P	1.268	1.00
97_A	367_D	1.267	1.00
328_K	394_F	1.267	1.00
54_R	163_L	1.267	1.00
70_F	221_T	1.254	1.00
447_F	480_V	1.252	1.00
466_K	474_I	1.250	1.00
54_R	366_E	1.245	1.00
437_D	443_K	1.245	1.00
435_I	445_K	1.245	1.00
201_R	247_I	1.239	1.00
181_G	359_P	1.238	1.00
88_P	112_I	1.237	1.00
88_P	115_E	1.230	1.00
78_V	160_T	1.230	1.00
49_I	53_D	1.229	1.00
93_G	97_A	1.221	1.00
336_K	380_W	1.219	1.00
462_I	466_K	1.217	1.00
464_F	467_E	1.211	1.00
36_R	39_Q	1.211	1.00
49_I	55_V	1.208	1.00
57_L	68_V	1.200	1.00
329_P	335_V	1.196	1.00
250_V	274_L	1.194	1.00
88_P	92_T	1.192	1.00
97_A	172_N	1.192	1.00
415_D	419_E	1.179	1.00
212_S	251_M	1.179	1.00
163_L	175_R	1.178	1.00
71_A	75_I	1.175	1.00
353_E	401_Y	1.174	1.00
177_M	363_K	1.172	1.00
315_T	394_F	1.164	1.00
27_T	245_E	1.161	1.00
354_I	397_I	1.159	1.00
34_R	150_P	1.157	1.00
466_K	471_A	1.155	1.00
35_K	39_Q	1.154	1.00
403_D	415_D	1.151	1.00
410_D	472_Y	1.150	1.00
155_V	159_D	1.148	1.00
249_T	276_I	1.145	1.00
434_G	442_E	1.142	1.00
346_L	350_E	1.142	1.00
262_E	291_R	1.114	1.00
33_Y	70_F	1.113	1.00
242_I	273_S	1.109	1.00
166_T	176_C	1.109	1.00
20_A	30_Y	1.102	1.00
96_K	172_N	1.097	1.00
236_V	263_A	1.097	1.00
23_S	26_H	1.097	1.00
26_H	63_H	1.097	1.00
110_K	114_D	1.096	1.00
82_V	91_M	1.094	1.00
178_I	182_G	1.086	1.00
28_L	36_R	1.085	1.00
36_R	64_P	1.083	1.00
32_G	35_K	1.083	1.00
443_K	476_E	1.075	1.00
446_A	477_V	1.074	1.00
58_L	91_M	1.072	1.00
9_L	38_N	1.072	1.00
158_D	179_T	1.070	1.00
49_I	102_A	1.070	1.00
458_E	479_F	1.068	1.00
258_T	288_L	1.067	1.00
43_A	46_Q	1.065	1.00
408_G	440_Y	1.060	1.00
465_C	474_I	1.059	1.00
480_V	483_L	1.058	1.00
65_A	208_I	1.057	1.00
40_L	104_F	1.056	1.00
450_K	456_I	1.053	1.00
33_Y	67_T	1.045	1.00
41_A	74_E	1.045	1.00
426_G	454_Q	1.042	1.00
22_K	228_V	1.041	1.00
355_V	380_W	1.039	1.00
228_V	245_E	1.034	1.00
90_E	473_K	1.032	1.00
182_G	361_L	1.031	1.00
458_E	477_V	1.029	1.00
404_V	413_Y	1.028	1.00
424_I	461_V	1.026	1.00
201_R	248_Q	1.025	1.00
228_V	241_V	1.025	1.00
371_A	375_V	1.023	1.00
200_L	225_T	1.021	1.00
333_V	360_F	1.020	1.00
285_P	288_L	1.019	1.00
24_G	231_K	1.013	1.00
292_Y	295_I	1.011	1.00
470_S	473_K	1.009	1.00
315_T	325_S	1.008	1.00
428_L	449_V	1.005	1.00
326_A	397_I	1.004	1.00
420_V	423_Q	1.003	1.00
206_H	212_S	0.998	1.00
37_I	71_A	0.995	1.00
53_D	77_A	0.995	1.00
483_L	491_V	0.992	1.00
261_L	291_R	0.992	1.00
356_V	383_T	0.987	1.00
460_D	463_A	0.986	1.00
202_F	220_G	0.981	1.00
494_D	498_N	0.978	1.00
418_E	493_K	0.976	1.00
313_T	395_I	0.973	1.00
405_I	444_P	0.971	1.00
93_G	165_F	0.970	1.00
358_T	361_L	0.966	1.00
176_C	362_F	0.962	1.00
459_E	463_A	0.960	1.00
335_V	395_I	0.958	1.00
454_Q	457_T	0.955	1.00
167_S	488_L	0.955	1.00
28_L	33_Y	0.954	1.00
46_Q	146_P	0.953	1.00
185_R	332_G	0.947	1.00
259_Y	439_L	0.947	1.00
86_L	94_I	0.945	1.00
19_E	29_T	0.943	1.00
83_S	209_Y	0.943	1.00
337_V	346_L	0.943	1.00
18_I	226_T	0.942	1.00
89_Y	468_R	0.940	1.00
325_S	394_F	0.940	1.00
89_Y	92_T	0.940	1.00
420_V	465_C	0.938	1.00
54_R	99_E	0.936	1.00
431_A	483_L	0.934	1.00
40_L	68_V	0.933	1.00
26_H	36_R	0.931	1.00
287_S	291_R	0.930	1.00
386_S	399_G	0.930	1.00
21_V	66_S	0.927	1.00
43_A	146_P	0.926	1.00
164_M	306_T	0.925	1.00
44_M	72_A	0.920	1.00
59_C	62_G	0.920	1.00
8_I	12_M	0.919	1.00
335_V	354_I	0.918	1.00
109_F	112_I	0.917	1.00
93_G	96_K	0.916	1.00
424_I	460_D	0.915	1.00
185_R	359_P	0.915	1.00
35_K	148_H	0.907	1.00
284_V	289_I	0.905	1.00
186_Y	310_G	0.905	1.00
42_N	147_D	0.904	1.00
63_H	67_T	0.903	1.00
56_A	103_M	0.900	1.00
203_L	230_T	0.896	1.00
33_Y	37_I	0.890	1.00
42_N	45_L	0.888	1.00
258_T	285_P	0.885	1.00
423_Q	464_F	0.884	1.00
463_A	466_K	0.883	1.00
187_V	222_F	0.882	1.00
233_Q	256_F	0.881	1.00
69_M	79_V	0.881	1.00
89_Y	93_G	0.880	1.00
220_G	227_F	0.878	1.00
436_P	439_L	0.875	1.00
42_N	151_E	0.872	1.00
45_L	50_Q	0.872	1.00
45_L	151_E	0.870	1.00
257_Y	292_Y	0.869	1.00
178_I	309_W	0.866	1.00
407_Y	434_G	0.863	1.00
337_V	395_I	0.857	1.00
211_T	305_S	0.855	1.00
199_G	248_Q	0.855	1.00
57_L	79_V	0.854	1.00
276_I	300_A	0.853	1.00
339_D	350_E	0.851	1.00
322_K	390_D	0.847	1.00
251_M	311_I	0.846	1.00
243_E	270_D	0.845	1.00
161_A	180_H	0.845	1.00
69_M	214_L	0.845	1.00
291_R	294_D	0.844	1.00
34_R	37_I	0.843	1.00
22_K	201_R	0.842	1.00
458_E	462_I	0.841	1.00
376_L	382_R	0.841	1.00
49_I	75_I	0.840	1.00
460_D	464_F	0.838	1.00
64_P	67_T	0.836	1.00
72_A	79_V	0.834	1.00
60_K	108_E	0.833	1.00
44_M	104_F	0.833	1.00
21_V	63_H	0.829	1.00
66_S	229_F	0.828	1.00
10_H	13_P	0.826	1.00
111_E	114_D	0.825	1.00
32_G	36_R	0.823	1.00
93_G	368_N	0.822	1.00
41_A	75_I	0.822	1.00
461_V	477_V	0.820	1.00
9_L	13_P	0.819	1.00
354_I	395_I	0.818	1.00
211_T	310_G	0.817	1.00
178_I	362_F	0.814	1.00
124_C	128_E	0.811	1.00
46_Q	145_G	0.810	1.00
343_G	355_V	0.809	1.00
106_G	109_F	0.808	1.00
377_Q	382_R	0.807	1.00
407_Y	476_E	0.803	1.00
431_A	496_L	0.803	1.00
370_E	373_A	0.801	1.00
7_L	188_K	0.797	1.00
278_M	302_G	0.794	1.00
201_R	246_K	0.793	1.00
18_I	198_K	0.791	1.00
205_C	256_F	0.791	1.00
56_A	80_V	0.790	1.00
426_G	451_N	0.789	1.00
308_A	361_L	0.785	1.00
308_A	381_F	0.780	1.00
8_I	70_F	0.780	1.00
36_R	63_H	0.780	1.00
160_T	179_T	0.779	1.00
349_G	391_E	0.778	1.00
67_T	71_A	0.777	1.00
334_K	380_W	0.769	1.00
94_I	175_R	0.769	1.00
26_H	64_P	0.769	1.00
368_N	372_T	0.768	1.00
47_K	102_A	0.765	1.00
257_Y	279_T	0.765	1.00
33_Y	66_S	0.763	1.00
449_V	482_E	0.763	1.00
253_L	256_F	0.761	1.00
248_Q	275_V	0.761	1.00
372_T	376_L	0.761	1.00
7_L	11_D	0.760	1.00
338_E	345_E	0.757	1.00
265_E	291_R	0.749	1.00
236_V	240_K	0.747	1.00
155_V	180_H	0.746	1.00
403_D	418_E	0.746	1.00
276_I	298_P	0.745	1.00
162_L	178_I	0.741	1.00
212_S	280_G	0.741	1.00
72_A	75_I	0.738	1.00
426_G	450_K	0.738	1.00
269_T	272_S	0.736	1.00
258_T	262_E	0.735	1.00
80_V	100_P	0.735	1.00
69_M	73_L	0.735	1.00
39_Q	43_A	0.734	1.00
462_I	474_I	0.734	1.00
59_C	65_A	0.732	1.00
6_H	9_L	0.730	1.00
335_V	387_G	0.729	1.00
431_A	491_V	0.727	1.00
387_G	395_I	0.726	1.00
382_R	401_Y	0.725	1.00
42_N	149_L	0.725	1.00
287_S	290_S	0.725	1.00
308_A	356_V	0.724	1.00
336_K	357_H	0.724	1.00
8_I	34_R	0.723	1.00
258_T	291_R	0.722	1.00
340_P	353_E	0.721	1.00
161_A	183_I	0.719	1.00
421_I	430_T	0.719	1.00
210_H	410_D	0.719	1.00
196_R	249_T	0.717	1.00
471_A	474_I	0.715	1.00
39_Q	147_D	0.715	1.00
242_I	247_I	0.715	1.00
240_K	243_E	0.714	1.00
62_G	106_G	0.712	1.00
435_I	443_K	0.712	1.00
186_Y	309_W	0.709	1.00
274_L	277_L	0.709	1.00
6_H	10_H	0.708	1.00
436_P	441_G	0.708	1.00
67_T	139_F	0.708	1.00
58_L	103_M	0.706	1.00
436_P	440_Y	0.704	1.00
47_K	125_V	0.703	1.00
112_I	115_E	0.703	1.00
465_C	469_L	0.702	1.00
191_N	219_L	0.702	1.00
215_I	251_M	0.702	1.00
186_Y	215_I	0.701	1.00
237_H	241_V	0.699	1.00
141_A	144_A	0.699	1.00
348_Q	391_E	0.699	1.00
50_Q	77_A	0.699	1.00
15_S	31_K	0.698	1.00
68_V	72_A	0.697	1.00
284_V	299_L	0.694	1.00
89_Y	172_N	0.694	1.00
302_G	311_I	0.693	1.00
203_L	241_V	0.691	1.00
308_A	312_S	0.691	1.00
27_T	226_T	0.690	1.00
17_E	29_T	0.688	1.00
79_V	214_L	0.686	1.00
456_I	461_V	0.686	1.00
300_A	316_P	0.685	1.00
251_M	302_G	0.684	1.00
45_L	153_E	0.683	1.00
58_L	109_F	0.683	1.00
40_L	44_M	0.681	1.00
407_Y	444_P	0.681	1.00
230_T	238_M	0.678	1.00
420_V	464_F	0.678	1.00
428_L	450_K	0.677	1.00
387_G	398_T	0.677	1.00
56_A	98_S	0.673	1.00
41_A	71_A	0.673	1.00
240_K	269_T	0.667	1.00
277_L	292_Y	0.667	1.00
202_F	249_T	0.666	1.00
55_V	102_A	0.665	1.00
38_N	150_P	0.664	1.00
11_D	224_E	0.661	1.00
433_V	497_R	0.661	1.00
59_C	104_F	0.660	1.00
40_L	43_A	0.658	1.00
415_D	418_E	0.657	1.00
39_Q	148_H	0.656	1.00
414_P	432_V	0.656	1.00
205_C	253_L	0.655	1.00
103_M	113_L	0.653	1.00
69_M	218_M	0.653	1.00
407_Y	440_Y	0.653	1.00
12_M	16_E	0.652	1.00
45_L	150_P	0.652	1.00
197_M	275_V	0.651	1.00
50_Q	101_K	0.651	1.00
258_T	287_S	0.650	1.00
193_S	331_A	0.648	1.00
182_G	363_K	0.648	1.00
51_K	155_V	0.645	1.00
414_P	493_K	0.642	1.00
42_N	148_H	0.640	1.00
87_K	90_E	0.639	1.00
337_V	389_V	0.639	1.00
442_E	497_R	0.638	1.00
303_Y	312_S	0.636	1.00
242_I	250_V	0.634	1.00
448_I	461_V	0.634	1.00
158_D	363_K	0.634	1.00
70_F	218_M	0.634	1.00
203_L	242_I	0.633	1.00
186_Y	311_I	0.633	1.00
243_E	273_S	0.631	1.00
59_C	68_V	0.631	1.00
150_P	153_E	0.629	1.00
250_V	277_L	0.629	1.00
361_L	381_F	0.629	1.00
51_K	153_E	0.629	1.00
330_V	333_V	0.628	1.00
431_A	493_K	0.627	1.00
96_K	119_E	0.625	1.00
196_R	225_T	0.625	1.00
484_P	496_L	0.624	1.00
99_E	366_E	0.624	1.00
97_A	366_E	0.621	1.00
233_Q	238_M	0.621	1.00
113_L	116_V	0.620	1.00
28_L	32_G	0.617	1.00
25_D	244_E	0.615	1.00
48_G	77_A	0.615	1.00
293_L	298_P	0.615	1.00
362_F	375_V	0.614	1.00
402_K	442_E	0.613	1.00
337_V	354_I	0.613	1.00
7_L	184_Y	0.612	1.00
105_Y	110_K	0.612	1.00
277_L	297_I	0.611	1.00
21_V	227_F	0.611	1.00
37_I	40_L	0.610	1.00
305_S	308_A	0.610	1.00
37_I	41_A	0.610	1.00
105_Y	109_F	0.609	1.00
427_I	430_T	0.609	1.00
326_A	387_G	0.608	1.00
13_P	34_R	0.607	1.00
301_H	324_A	0.605	1.00
215_I	310_G	0.605	1.00
447_F	478_E	0.604	1.00
42_N	150_P	0.604	1.00
427_I	448_I	0.604	1.00
54_R	367_D	0.603	1.00
42_N	146_P	0.603	1.00
45_L	152_T	0.602	1.00
23_S	231_K	0.602	1.00
428_L	452_G	0.602	1.00
30_Y	225_T	0.601	1.00
102_A	125_V	0.600	1.00
437_D	440_Y	0.599	1.00
172_N	368_N	0.599	1.00
188_K	222_F	0.596	1.00
215_I	311_I	0.596	1.00
196_R	200_L	0.596	1.00
15_S	224_E	0.595	1.00
216_C	251_M	0.595	1.00
44_M	102_A	0.595	1.00
64_P	106_G	0.595	1.00
368_N	374_K	0.593	1.00
80_V	165_F	0.591	1.00
305_S	383_T	0.591	1.00
206_H	251_M	0.589	1.00
59_C	106_G	0.589	1.00
290_S	293_L	0.586	1.00
15_S	198_K	0.585	1.00
241_V	244_E	0.585	1.00
238_M	242_I	0.585	1.00
78_V	163_L	0.584	1.00
420_V	469_L	0.583	1.00
187_V	218_M	0.583	1.00
43_A	143_F	0.582	1.00
407_Y	442_E	0.582	1.00
36_R	143_F	0.581	1.00
7_L	222_F	0.580	1.00
349_G	388_Y	0.580	1.00
226_T	245_E	0.579	1.00
419_E	423_Q	0.579	1.00
78_V	366_E	0.578	1.00
283_K	397_I	0.578	1.00
162_L	214_L	0.577	1.00
421_I	465_C	0.577	1.00
424_I	427_I	0.576	1.00
284_V	301_H	0.576	1.00
204_A	227_F	0.576	1.00
209_Y	410_D	0.575	1.00
59_C	105_Y	0.574	1.00
97_A	175_R	0.573	1.00
205_C	252_A	0.572	1.00
96_K	122_S	0.572	1.00
243_E	272_S	0.572	1.00
163_L	177_M	0.572	1.00
207_P	210_H	0.571	1.00
251_M	280_G	0.570	1.00
414_P	434_G	0.570	1.00
202_F	225_T	0.570	1.00
57_L	72_A	0.570	1.00
81_P	164_M	0.569	1.00
162_L	183_I	0.569	1.00
143_F	146_P	0.567	1.00
58_L	112_I	0.567	1.00
288_L	291_R	0.567	1.00
38_N	45_L	0.566	1.00
19_E	201_R	0.564	1.00
137_A	141_A	0.563	1.00
462_I	465_C	0.563	1.00
345_E	355_V	0.562	1.00
338_E	380_W	0.559	1.00
40_L	139_F	0.557	1.00
417_V	444_P	0.557	1.00
39_Q	42_N	0.556	1.00
279_T	301_H	0.555	1.00
429_E	483_L	0.554	1.00
338_E	343_G	0.553	1.00
69_M	217_I	0.553	1.00
474_I	477_V	0.552	1.00
356_V	361_L	0.550	1.00
171_G	413_Y	0.550	1.00
438_P	441_G	0.550	1.00
188_K	191_N	0.548	1.00
120_L	123_L	0.548	1.00
405_I	434_G	0.548	1.00
105_Y	126_T	0.547	1.00
57_L	65_A	0.547	1.00
42_N	46_Q	0.547	1.00
364_G	369_P	0.546	1.00
418_E	446_A	0.546	1.00
188_K	192_S	0.545	1.00
279_T	299_L	0.545	1.00
313_T	326_A	0.545	1.00
426_G	464_F	0.544	1.00
280_G	302_G	0.544	1.00
212_S	278_M	0.543	1.00
201_R	204_A	0.543	1.00
159_D	180_H	0.542	1.00
239_L	271_L	0.542	1.00
140_E	144_A	0.542	1.00
435_I	447_F	0.541	1.00
101_K	123_L	0.541	1.00
90_E	416_Q	0.541	1.00
350_E	388_Y	0.540	1.00
399_G	414_P	0.540	1.00
98_S	163_L	0.539	1.00
49_I	101_K	0.538	1.00
351_I	401_Y	0.538	1.00
406_I	413_Y	0.536	1.00
98_S	175_R	0.536	1.00
345_E	389_V	0.535	1.00
204_A	229_F	0.535	1.00
346_L	349_G	0.534	1.00
122_S	125_V	0.533	1.00
54_R	100_P	0.533	1.00
259_Y	262_E	0.531	1.00
78_V	81_P	0.531	1.00
19_E	23_S	0.531	1.00
139_F	143_F	0.531	1.00
204_A	213_A	0.530	1.00
8_I	37_I	0.530	1.00
254_P	282_T	0.530	1.00
21_V	28_L	0.529	1.00
105_Y	113_L	0.529	1.00
280_G	311_I	0.528	1.00
58_L	113_L	0.528	1.00
186_Y	190_S	0.527	1.00
292_Y	299_L	0.526	1.00
36_R	40_L	0.525	1.00
6_H	154_M	0.525	1.00
86_L	91_M	0.522	1.00
238_M	256_F	0.521	1.00
170_T	174_K	0.519	1.00
82_V	95_L	0.519	1.00
261_L	288_L	0.518	1.00
22_K	25_D	0.518	1.00
203_L	238_M	0.518	1.00
30_Y	221_T	0.518	1.00
419_E	422_Q	0.516	1.00
239_L	260_L	0.514	1.00
437_D	441_G	0.513	1.00
137_A	140_E	0.512	1.00
399_G	415_D	0.511	1.00
265_E	268_Q	0.511	1.00
421_I	432_V	0.511	1.00
212_S	302_G	0.510	1.00
369_P	372_T	0.510	1.00
482_E	485_K	0.510	1.00
151_E	155_V	0.509	1.00
38_N	149_L	0.509	1.00
312_S	333_V	0.508	1.00
279_T	292_Y	0.508	1.00
187_V	219_L	0.507	1.00
290_S	323_A	0.506	1.00
146_P	149_L	0.506	1.00
242_I	246_K	0.505	1.00
376_L	381_F	0.505	1.00
264_W	268_Q	0.504	1.00
289_I	301_H	0.504	1.00
235_P	263_A	0.504	1.00
430_T	465_C	0.504	1.00
93_G	98_S	0.503	1.00
9_L	150_P	0.500	1.00
176_C	306_T	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tsyA	2	0.7992	100	0.093	Contact Map
3g7sA	2	0.9125	100	0.098	Contact Map
3etcA	2	0.9583	100	0.106	Contact Map
2d1sA	1	0.998	100	0.106	Contact Map
3ni2A	1	0.9881	100	0.106	Contact Map
1mdbA	1	0.9881	100	0.109	Contact Map
3rixA	1	0.7793	100	0.111	Contact Map
3o83A	1	0.7972	100	0.112	Contact Map
1v25A	2	0.9384	100	0.119	Contact Map
3ivrA	2	0.7714	100	0.121	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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