YSNE - BACSU - GREMLIN Contacts

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YSNE - Uncharacterized N-acetyltransferase YsnE

UniProt:	P94562	Sequences: MHIKIDDLTGRQVVSLVNEHLHSMTLMSPPESIHALGLEKLRGPEITFWSAWEGDELAGCGALKELDTRHGEIKSMRTSASHLRKGVAKQVLQHIIEEAEKRGYERLSLETGSMASFEPARKLYESFGFQYCEPFADYGEDPNSVFMTKKL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	151 (130)
Sequences:	6331 (4915)
Seq/√Len:	431.1

ECOLI - YEDL YJGM PHNO RIMI MNAT YPEA YAFP YJAB YIAC YHBS YJHQ
BACSU - YSNE YTMI PAIA YHFO YBFA YHDJ YQJY YYAR YWNH RIMI YUAI YESJ YDGE YVBK YYCN YITI YBBJ BLTD YOBR YYAT SPSD YYBD YJCF
HALSA - Q9HSL3 Q9HMF0 Q9HMI8 Q9HQD2 Q9HRK6
SULSO - Y209 Q7LXZ8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
96_I	129_F	3.663	1.00
58_A	82_H	3.063	1.00
89_K	126_S	2.894	1.00
19_E	79_S	2.749	1.00
51_A	87_V	2.706	1.00
89_K	127_F	2.646	1.00
93_Q	127_F	2.567	1.00
125_E	131_Y	2.425	1.00
61_G	95_I	2.415	1.00
98_E	101_K	2.391	1.00
92_L	127_F	2.380	1.00
98_E	102_R	2.198	1.00
96_I	107_L	2.148	1.00
69_R	105_E	2.139	1.00
53_E	85_K	2.053	1.00
49_W	94_H	2.010	1.00
53_E	58_A	1.983	1.00
56_E	81_S	1.917	1.00
94_H	97_E	1.865	1.00
50_S	57_L	1.855	1.00
65_E	104_Y	1.849	1.00
52_W	57_L	1.838	1.00
70_H	108_S	1.641	1.00
47_T	98_E	1.629	1.00
109_L	124_Y	1.580	1.00
71_G	104_Y	1.573	1.00
121_R	125_E	1.551	1.00
94_H	98_E	1.527	1.00
59_G	87_V	1.491	1.00
71_G	107_L	1.460	1.00
14_V	18_N	1.448	1.00
61_G	91_V	1.423	1.00
52_W	55_D	1.416	1.00
12_Q	52_W	1.381	1.00
111_T	115_A	1.379	1.00
122_K	125_E	1.364	1.00
51_A	59_G	1.346	1.00
73_I	92_L	1.343	1.00
59_G	78_T	1.342	1.00
53_E	82_H	1.340	1.00
70_H	106_R	1.323	1.00
48_F	62_A	1.305	1.00
76_M	92_L	1.294	1.00
12_Q	15_S	1.259	1.00
121_R	131_Y	1.258	1.00
89_K	93_Q	1.258	1.00
11_R	15_S	1.254	1.00
49_W	98_E	1.234	1.00
97_E	101_K	1.188	1.00
36_L	39_E	1.188	1.00
93_Q	97_E	1.177	1.00
53_E	56_E	1.137	1.00
72_E	75_S	1.130	1.00
18_N	22_H	1.124	1.00
27_M	119_P	1.116	1.00
23_S	27_M	1.104	1.00
63_L	95_I	1.103	1.00
61_G	76_M	1.098	1.00
56_E	79_S	1.090	1.00
71_G	99_A	1.074	1.00
107_L	129_F	1.071	1.00
63_L	98_E	1.058	1.00
19_E	81_S	1.011	1.00
34_H	37_G	1.010	1.00
58_A	87_V	1.009	1.00
131_Y	134_P	1.001	1.00
109_L	120_A	0.985	1.00
86_G	89_K	0.985	1.00
99_A	107_L	0.969	1.00
90_Q	93_Q	0.946	1.00
79_S	82_H	0.945	1.00
120_A	124_Y	0.935	1.00
33_I	37_G	0.934	1.00
97_E	100_E	0.897	1.00
118_E	122_K	0.891	1.00
82_H	85_K	0.884	1.00
20_H	24_M	0.879	1.00
92_L	123_L	0.873	1.00
83_L	119_P	0.872	1.00
123_L	127_F	0.868	1.00
115_A	118_E	0.866	1.00
108_S	132_C	0.863	1.00
87_V	90_Q	0.861	1.00
15_S	19_E	0.861	1.00
110_E	136_A	0.856	1.00
92_L	124_Y	0.855	1.00
119_P	122_K	0.846	1.00
12_Q	56_E	0.845	1.00
67_D	70_H	0.823	1.00
12_Q	57_L	0.821	1.00
63_L	102_R	0.820	1.00
23_S	80_A	0.819	1.00
73_I	76_M	0.819	1.00
9_T	52_W	0.819	1.00
96_I	100_E	0.809	1.00
36_L	40_K	0.798	1.00
32_S	36_L	0.797	1.00
37_G	41_L	0.796	1.00
111_T	124_Y	0.792	1.00
65_E	102_R	0.792	1.00
23_S	83_L	0.791	1.00
78_T	87_V	0.789	1.00
63_L	71_G	0.768	1.00
43_G	46_I	0.762	1.00
51_A	78_T	0.747	1.00
118_E	121_R	0.735	1.00
59_G	91_V	0.730	1.00
122_K	126_S	0.730	1.00
114_M	118_E	0.725	1.00
111_T	120_A	0.718	1.00
90_Q	94_H	0.716	1.00
28_S	31_E	0.716	1.00
73_I	95_I	0.712	1.00
61_G	73_I	0.706	1.00
16_L	57_L	0.700	1.00
9_T	12_Q	0.700	1.00
115_A	119_P	0.699	1.00
64_K	110_E	0.697	1.00
15_S	18_N	0.684	1.00
15_S	56_E	0.679	1.00
32_S	35_A	0.677	1.00
13_V	48_F	0.669	1.00
89_K	122_K	0.669	1.00
74_K	110_E	0.654	0.99
63_L	99_A	0.654	0.99
17_V	20_H	0.654	0.99
47_T	102_R	0.650	0.99
33_I	41_L	0.647	0.99
15_S	79_S	0.646	0.99
10_G	13_V	0.641	0.99
135_F	138_Y	0.637	0.99
111_T	121_R	0.637	0.99
72_E	108_S	0.635	0.99
11_R	14_V	0.633	0.99
22_H	26_L	0.628	0.99
66_L	72_E	0.619	0.99
62_A	74_K	0.619	0.99
56_E	82_H	0.615	0.99
63_L	104_Y	0.615	0.99
34_H	41_L	0.613	0.99
49_W	91_V	0.611	0.99
48_F	60_C	0.608	0.99
17_V	21_L	0.606	0.99
94_H	101_K	0.606	0.99
7_D	42_R	0.602	0.99
85_K	123_L	0.598	0.99
73_I	124_Y	0.598	0.99
20_H	28_S	0.596	0.99
47_T	51_A	0.594	0.99
62_A	72_E	0.593	0.99
38_L	42_R	0.593	0.99
62_A	75_S	0.591	0.99
76_M	124_Y	0.588	0.99
49_W	95_I	0.586	0.99
64_K	74_K	0.579	0.99
100_E	103_G	0.578	0.99
45_E	65_E	0.576	0.99
23_S	26_L	0.575	0.99
41_L	46_I	0.570	0.99
113_S	123_L	0.568	0.99
113_S	131_Y	0.562	0.98
16_L	77_R	0.561	0.98
24_M	28_S	0.560	0.98
25_T	33_I	0.556	0.98
84_R	122_K	0.554	0.98
106_R	132_C	0.553	0.98
60_C	77_R	0.553	0.98
39_E	42_R	0.551	0.98
120_A	123_L	0.545	0.98
37_G	40_K	0.545	0.98
132_C	135_F	0.540	0.98
7_D	10_G	0.539	0.98
63_L	73_I	0.538	0.98
73_I	107_L	0.538	0.98
19_E	77_R	0.534	0.98
25_T	28_S	0.534	0.98
61_G	92_L	0.534	0.98
16_L	28_S	0.531	0.98
112_G	115_A	0.530	0.98
23_S	77_R	0.529	0.98
65_E	68_T	0.528	0.98
90_Q	97_E	0.527	0.98
18_N	21_L	0.527	0.98
78_T	91_V	0.524	0.98
20_H	77_R	0.523	0.97
76_M	127_F	0.521	0.97
69_R	106_R	0.516	0.97
20_H	23_S	0.512	0.97
24_M	119_P	0.509	0.97
86_G	90_Q	0.504	0.97
115_A	121_R	0.503	0.97
13_V	60_C	0.501	0.97
26_L	112_G	0.501	0.97
46_I	62_A	0.500	0.97
66_L	70_H	0.500	0.97

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3lodA	1	0.9272	99.9	0.328	Contact Map
1yx0A	1	0.9868	99.9	0.33	Contact Map
3d8pA	1	0.9868	99.9	0.338	Contact Map
3dr6A	2	0.9868	99.9	0.348	Contact Map
2j8mA	2	0.9868	99.9	0.353	Contact Map
1n71A	4	0.9536	99.8	0.368	Contact Map
2fiaA	1	0.9735	99.8	0.376	Contact Map
2r7hA	2	0.9801	99.8	0.379	Contact Map
3fixA	2	0.9404	99.8	0.382	Contact Map
3fynA	2	0.8675	99.8	0.385	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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