LCFA - BACSU - GREMLIN Contacts

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LCFA - Long-chain-fatty-acid--CoA ligase

UniProt:	P94547	Sequences: MQSQKPWLAEYPNDIPHELPLPNKTLQSILTDSAARFPDKTAISFYGKKLTFHDILTDALKLAAFLQCNGLQKGDRVAVMLPNCPQTVISYYGVLFAGGIVVQTNPLYTEHELEYQLRDAQVSVIITLDLLFPKAIKMKTLSIVDQILITSVKDYLPFPKNILYPLTQKQKVHIDFDKTANIHTFASCMKQEKTELLTIPKIDPEHDIAVLQYTGGTTGAPKGVMLTHQNILANTEMCAAWMYDVKEGAEKVLGIVPFFHVYGLTAVMNYSIKLGFEMILLPKFDPLETLKIIDKHKPTLFPGAPTIYIGLLHHPELQHYDLSSIKSCLSGSAALPVEVKQKFEKVTGGKLVEGYGLSEASPVTHANFIWGKNKPGSIGCPWPSTDAAIYSEETGELAAPYEHGEIIVKGPQVMKGYWNKPEETAAVLRDGWLFTGDMGYMDEEGFFYIADRKKDIIIAGGYNIYPREVEEALYEHEAIQEIVVAGVPDSYRGETVKAFVVLKKGAKADTEELDAFARSRLAPYKVPKAYEFRKELPKTAVGKILRRRLLEEETENHHIK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	560 (486)
Sequences:	71021 (50568)
Seq/√Len:	2293.8

ECOLI - LCFA FADK ENTF ACSA PRPE AAS ENTE CAIC MENE PAAK
BACSU - LCFA SRFAC LCFB PPSE DHBE YNGI ACSA YDAB YTCI MENE PPSB DLTA YHFT PPSC DHBF PKSJ PPSD SRFAA PKSN PPSA SRFAB
HALSA - Q9HRY8 Q9HQU8 Q9HSM3 Q9HNK0 Q9HQ43 Q9HQN8
SULSO - Q97UX8 Q97VT6 Q97UW7 Q97YK9 Q97VU7 Q97U22 Q97WQ0 Q97WQ9 Q97UF6 Q97WK0 Q97XW4 Q97V27 Q97WS5 Q980E4 Q97X52 Q97XW5 Q97VJ6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
208_I	225_M	4.111	1.00
406_I	439_G	3.725	1.00
119_D	213_Y	3.283	1.00
476_H	516_F	3.072	1.00
386_D	409_K	3.056	1.00
71_L	99_G	3.055	1.00
60_L	96_F	2.937	1.00
420_K	423_E	2.881	1.00
75_D	123_S	2.827	1.00
227_T	415_K	2.809	1.00
78_A	122_V	2.705	1.00
56_L	96_F	2.657	1.00
76_R	102_V	2.643	1.00
458_I	463_N	2.641	1.00
440_Y	448_Y	2.579	1.00
481_E	538_K	2.411	1.00
44_S	277_E	2.410	1.00
405_E	434_F	2.407	1.00
41_T	49_K	2.372	1.00
121_Q	419_N	2.354	1.00
251_K	277_E	2.331	1.00
403_H	438_M	2.316	1.00
391_S	396_E	2.294	1.00
473_L	498_A	2.290	1.00
246_K	249_A	2.280	1.00
250_E	326_K	2.266	1.00
390_Y	407_I	2.239	1.00
474_Y	482_I	2.229	1.00
37_F	40_K	2.208	1.00
31_T	56_L	2.203	1.00
90_S	126_I	2.200	1.00
388_A	397_L	2.192	1.00
65_F	69_N	2.175	1.00
119_D	420_K	2.162	1.00
291_K	295_K	2.161	1.00
250_E	299_T	2.035	1.00
33_S	37_F	2.033	1.00
45_F	85_P	2.024	1.00
58_D	89_I	1.992	1.00
497_K	531_E	1.984	1.00
115_Y	220_A	1.975	1.00
407_I	434_F	1.961	1.00
62_L	89_I	1.958	1.00
475_E	520_R	1.953	1.00
377_S	448_Y	1.943	1.00
73_K	207_D	1.930	1.00
421_P	425_A	1.921	1.00
56_L	60_L	1.896	1.00
203_D	207_D	1.889	1.00
94_V	99_G	1.887	1.00
423_E	426_A	1.877	1.00
442_D	448_Y	1.860	1.00
74_G	207_D	1.860	1.00
455_D	546_R	1.846	1.00
39_D	53_H	1.842	1.00
545_L	548_R	1.837	1.00
459_A	464_I	1.823	1.00
442_D	446_F	1.806	1.00
468_E	525_K	1.774	1.00
441_M	447_F	1.772	1.00
59_A	96_F	1.771	1.00
389_I	439_G	1.764	1.00
388_A	407_I	1.756	1.00
67_Q	97_A	1.713	1.00
114_E	118_R	1.713	1.00
499_F	549_L	1.711	1.00
484_V	498_A	1.699	1.00
72_Q	75_D	1.684	1.00
337_V	341_Q	1.676	1.00
279_I	298_P	1.673	1.00
227_T	230_N	1.669	1.00
82_P	128_L	1.665	1.00
53_H	57_T	1.658	1.00
208_I	415_K	1.652	1.00
403_H	450_A	1.650	1.00
44_S	49_K	1.635	1.00
60_L	64_A	1.618	1.00
32_D	36_R	1.617	1.00
78_A	104_T	1.604	1.00
470_E	484_V	1.599	1.00
95_L	209_A	1.597	1.00
548_R	551_E	1.593	1.00
400_P	441_M	1.590	1.00
474_Y	481_E	1.590	1.00
120_A	213_Y	1.589	1.00
501_V	536_L	1.588	1.00
44_S	296_H	1.585	1.00
440_Y	450_A	1.580	1.00
303_G	308_Y	1.564	1.00
480_Q	503_K	1.560	1.00
399_A	402_E	1.542	1.00
271_S	276_F	1.538	1.00
230_N	361_S	1.531	1.00
297_K	324_S	1.524	1.00
77_V	94_V	1.520	1.00
50_L	89_I	1.515	1.00
213_Y	223_G	1.509	1.00
93_G	97_A	1.507	1.00
485_A	499_F	1.504	1.00
350_K	368_F	1.502	1.00
65_F	188_C	1.500	1.00
42_A	55_I	1.499	1.00
250_E	300_L	1.498	1.00
439_G	449_I	1.493	1.00
422_E	426_A	1.492	1.00
341_Q	345_K	1.491	1.00
206_H	229_Q	1.480	1.00
62_L	93_G	1.479	1.00
509_D	512_E	1.474	1.00
74_G	415_K	1.472	1.00
374_K	444_E	1.472	1.00
364_T	408_V	1.466	1.00
211_L	418_W	1.460	1.00
40_K	249_A	1.450	1.00
33_S	36_R	1.445	1.00
409_K	432_W	1.445	1.00
387_A	408_V	1.445	1.00
119_D	419_N	1.438	1.00
51_T	54_D	1.433	1.00
288_E	291_K	1.432	1.00
306_T	333_A	1.427	1.00
478_A	512_E	1.425	1.00
41_T	44_S	1.416	1.00
41_T	277_E	1.411	1.00
308_Y	328_C	1.410	1.00
539_T	545_L	1.406	1.00
253_L	298_P	1.402	1.00
77_V	99_G	1.402	1.00
516_F	520_R	1.399	1.00
246_K	250_E	1.399	1.00
357_L	433_L	1.397	1.00
225_M	416_G	1.396	1.00
31_T	96_F	1.395	1.00
500_V	530_Y	1.395	1.00
203_D	206_H	1.395	1.00
294_D	320_Y	1.390	1.00
76_R	418_W	1.382	1.00
49_K	296_H	1.370	1.00
330_S	335_L	1.368	1.00
251_K	298_P	1.364	1.00
78_A	117_L	1.362	1.00
472_A	520_R	1.362	1.00
50_L	85_P	1.355	1.00
391_S	398_A	1.352	1.00
239_A	274_L	1.352	1.00
230_N	413_V	1.346	1.00
184_T	187_S	1.344	1.00
427_V	433_L	1.340	1.00
104_T	113_L	1.337	1.00
414_M	428_L	1.335	1.00
293_I	324_S	1.333	1.00
457_I	466_P	1.333	1.00
502_L	532_F	1.332	1.00
514_D	530_Y	1.331	1.00
281_L	292_I	1.331	1.00
76_R	100_I	1.319	1.00
71_L	75_D	1.312	1.00
500_V	532_F	1.299	1.00
499_F	550_L	1.295	1.00
392_E	453_K	1.292	1.00
117_L	122_V	1.291	1.00
100_I	208_I	1.290	1.00
71_L	77_V	1.290	1.00
214_T	224_V	1.279	1.00
34_A	56_L	1.279	1.00
365_H	387_A	1.278	1.00
225_M	418_W	1.277	1.00
38_P	53_H	1.277	1.00
57_T	61_K	1.269	1.00
488_P	494_E	1.263	1.00
374_K	446_F	1.263	1.00
489_D	495_T	1.262	1.00
478_A	506_A	1.259	1.00
515_A	519_S	1.255	1.00
406_I	449_I	1.255	1.00
59_A	93_G	1.242	1.00
393_E	396_E	1.234	1.00
285_D	288_E	1.230	1.00
240_A	383_P	1.222	1.00
115_Y	119_D	1.220	1.00
102_V	120_A	1.218	1.00
79_V	90_S	1.218	1.00
76_R	211_L	1.214	1.00
251_K	279_I	1.210	1.00
403_H	440_Y	1.208	1.00
92_Y	272_I	1.206	1.00
45_F	48_K	1.204	1.00
438_M	453_K	1.203	1.00
292_I	296_H	1.199	1.00
518_R	526_V	1.198	1.00
250_E	276_F	1.192	1.00
112_E	525_K	1.187	1.00
262_Y	302_P	1.187	1.00
510_T	532_F	1.185	1.00
301_F	325_I	1.174	1.00
58_D	61_K	1.171	1.00
55_I	92_Y	1.170	1.00
398_A	402_E	1.169	1.00
487_V	497_K	1.163	1.00
211_L	223_G	1.160	1.00
115_Y	213_Y	1.155	1.00
481_E	501_V	1.154	1.00
498_A	530_Y	1.148	1.00
380_C	446_F	1.139	1.00
497_K	529_A	1.137	1.00
472_A	517_A	1.132	1.00
455_D	467_R	1.130	1.00
389_I	398_A	1.127	1.00
54_D	57_T	1.126	1.00
71_L	124_V	1.125	1.00
313_H	342_K	1.124	1.00
381_P	387_A	1.124	1.00
387_A	406_I	1.124	1.00
118_R	220_A	1.123	1.00
405_E	453_K	1.118	1.00
516_F	519_S	1.117	1.00
62_L	126_I	1.116	1.00
226_L	230_N	1.116	1.00
467_R	471_E	1.113	1.00
517_A	526_V	1.110	1.00
229_Q	411_P	1.107	1.00
58_D	86_Q	1.107	1.00
388_A	432_W	1.104	1.00
499_F	533_R	1.097	1.00
41_T	51_T	1.095	1.00
462_Y	524_Y	1.093	1.00
31_T	60_L	1.087	1.00
510_T	530_Y	1.081	1.00
204_P	229_Q	1.081	1.00
110_E	134_K	1.081	1.00
46_Y	282_P	1.077	1.00
300_L	327_S	1.076	1.00
215_G	541_V	1.074	1.00
279_I	292_I	1.073	1.00
25_T	28_S	1.073	1.00
408_V	435_T	1.072	1.00
499_F	553_E	1.056	1.00
513_L	530_Y	1.056	1.00
119_D	220_A	1.055	1.00
495_T	528_K	1.055	1.00
87_T	258_F	1.051	1.00
533_R	536_L	1.048	1.00
514_D	518_R	1.047	1.00
511_E	515_A	1.046	1.00
438_M	451_D	1.041	1.00
456_I	465_Y	1.041	1.00
48_K	58_D	1.041	1.00
518_R	523_P	1.040	1.00
75_D	99_G	1.034	1.00
367_N	446_F	1.029	1.00
71_L	97_A	1.028	1.00
110_E	114_E	1.028	1.00
225_M	415_K	1.025	1.00
56_L	59_A	1.024	1.00
40_K	277_E	1.022	1.00
476_H	513_L	1.022	1.00
233_A	384_S	1.021	1.00
460_G	492_R	1.018	1.00
502_L	508_A	1.018	1.00
64_A	198_T	1.017	1.00
536_L	544_I	1.015	1.00
343_F	347_T	1.015	1.00
457_I	496_V	1.014	1.00
212_Q	358_S	1.013	1.00
251_K	299_T	1.013	1.00
385_T	412_Q	1.012	1.00
410_G	413_V	1.010	1.00
50_L	58_D	1.010	1.00
336_P	339_V	1.010	1.00
378_I	449_I	1.009	1.00
63_A	96_F	1.008	1.00
65_F	68_C	1.007	1.00
335_L	340_K	1.004	1.00
30_L	34_A	1.003	1.00
486_G	494_E	1.001	1.00
522_A	525_K	0.996	1.00
42_A	52_F	0.993	1.00
391_S	402_E	0.992	1.00
407_I	432_W	0.991	1.00
105_N	259_F	0.990	1.00
249_A	299_T	0.989	1.00
44_S	279_I	0.987	1.00
55_I	89_I	0.981	1.00
256_V	262_Y	0.980	1.00
56_L	197_L	0.977	1.00
224_V	414_M	0.976	1.00
365_H	447_F	0.972	1.00
202_I	207_D	0.972	1.00
287_L	314_H	0.970	1.00
252_V	271_S	0.967	1.00
284_F	307_I	0.964	1.00
476_H	512_E	0.963	1.00
488_P	491_Y	0.962	1.00
406_I	447_F	0.961	1.00
495_T	529_A	0.961	1.00
512_E	515_A	0.961	1.00
206_H	227_T	0.960	1.00
80_M	113_L	0.959	1.00
387_A	447_F	0.958	1.00
367_N	377_S	0.957	1.00
470_E	546_R	0.957	1.00
271_S	278_M	0.956	1.00
81_L	165_P	0.956	1.00
66_L	94_V	0.952	1.00
279_I	296_H	0.949	1.00
423_E	427_V	0.948	1.00
483_V	536_L	0.947	1.00
233_A	411_P	0.947	1.00
309_I	339_V	0.945	1.00
67_Q	198_T	0.940	1.00
487_V	529_A	0.938	1.00
48_K	85_P	0.937	1.00
312_L	342_K	0.937	1.00
234_N	362_P	0.933	1.00
360_A	433_L	0.931	1.00
428_L	434_F	0.926	1.00
459_A	486_G	0.924	1.00
208_I	227_T	0.922	1.00
547_R	551_E	0.922	1.00
209_A	228_H	0.922	1.00
533_R	552_E	0.919	1.00
64_A	193_K	0.919	1.00
55_I	59_A	0.918	1.00
62_L	90_S	0.916	1.00
389_I	447_F	0.912	1.00
50_L	55_I	0.912	1.00
76_R	121_Q	0.912	1.00
85_P	89_I	0.904	1.00
115_Y	420_K	0.898	1.00
43_I	88_V	0.896	1.00
478_A	503_K	0.894	1.00
302_P	363_V	0.890	1.00
475_E	516_F	0.888	1.00
88_V	267_V	0.886	1.00
235_T	273_K	0.885	1.00
472_A	475_E	0.878	1.00
78_A	125_I	0.876	1.00
310_G	491_Y	0.876	1.00
30_L	92_Y	0.876	1.00
81_L	84_C	0.875	1.00
253_L	281_L	0.872	1.00
374_K	442_D	0.871	1.00
226_L	361_S	0.870	1.00
111_H	520_R	0.868	1.00
390_Y	397_L	0.868	1.00
342_K	346_V	0.867	1.00
108_Y	116_Q	0.865	1.00
499_F	552_E	0.864	1.00
473_L	482_I	0.860	1.00
255_I	307_I	0.857	1.00
64_A	67_Q	0.854	1.00
510_T	514_D	0.852	1.00
261_V	357_L	0.851	1.00
111_H	114_E	0.849	1.00
512_E	516_F	0.848	1.00
483_V	549_L	0.846	1.00
48_K	86_Q	0.844	1.00
65_F	192_E	0.842	1.00
66_L	126_I	0.839	1.00
478_A	502_L	0.838	1.00
91_Y	264_L	0.827	1.00
44_S	251_K	0.826	1.00
110_E	137_K	0.824	1.00
251_K	297_K	0.823	1.00
261_V	362_P	0.822	1.00
360_A	413_V	0.820	1.00
480_Q	501_V	0.820	1.00
111_H	115_Y	0.819	1.00
69_N	124_V	0.819	1.00
89_I	93_G	0.818	1.00
429_R	434_F	0.818	1.00
459_A	528_K	0.817	1.00
389_I	406_I	0.816	1.00
548_R	552_E	0.816	1.00
81_L	126_I	0.815	1.00
94_V	101_V	0.815	1.00
308_Y	343_F	0.814	1.00
115_Y	118_R	0.814	1.00
79_V	101_V	0.814	1.00
116_Q	223_G	0.814	1.00
63_A	97_A	0.810	1.00
387_A	439_G	0.806	1.00
128_L	131_L	0.800	1.00
304_A	307_I	0.800	1.00
67_Q	72_Q	0.800	1.00
32_D	35_A	0.796	1.00
43_I	85_P	0.792	1.00
466_P	484_V	0.791	1.00
91_Y	101_V	0.790	1.00
377_S	446_F	0.790	1.00
260_H	462_Y	0.786	1.00
121_Q	418_W	0.785	1.00
52_F	276_F	0.783	1.00
360_A	408_V	0.778	1.00
386_D	432_W	0.776	1.00
55_I	88_V	0.776	1.00
388_A	430_D	0.775	1.00
54_D	58_D	0.774	1.00
342_K	345_K	0.772	1.00
209_A	231_I	0.771	1.00
315_P	319_H	0.769	1.00
338_E	342_K	0.769	1.00
88_V	280_L	0.767	1.00
483_V	544_I	0.767	1.00
40_K	247_E	0.766	1.00
68_C	192_E	0.766	1.00
27_Q	202_I	0.764	1.00
94_V	97_A	0.764	1.00
262_Y	331_G	0.761	1.00
309_I	336_P	0.760	1.00
47_G	295_K	0.758	1.00
466_P	546_R	0.758	1.00
29_I	33_S	0.756	1.00
234_N	265_T	0.754	1.00
335_L	351_L	0.751	1.00
27_Q	228_H	0.749	1.00
328_C	343_F	0.748	1.00
86_Q	89_I	0.747	1.00
320_Y	323_S	0.745	1.00
226_L	414_M	0.744	1.00
329_L	354_G	0.744	1.00
327_S	352_V	0.742	1.00
102_V	122_V	0.742	1.00
29_I	236_E	0.742	1.00
67_Q	200_P	0.742	1.00
119_D	418_W	0.741	1.00
395_G	407_I	0.739	1.00
439_G	447_F	0.738	1.00
78_A	102_V	0.737	1.00
82_P	130_L	0.735	1.00
57_T	195_E	0.735	1.00
37_F	53_H	0.734	1.00
434_F	453_K	0.733	1.00
353_E	376_G	0.732	1.00
34_A	38_P	0.732	1.00
515_A	518_R	0.732	1.00
485_A	553_E	0.731	1.00
255_I	304_A	0.730	1.00
41_T	45_F	0.726	1.00
500_V	513_L	0.726	1.00
325_I	328_C	0.725	1.00
294_D	321_D	0.725	1.00
234_N	361_S	0.724	1.00
90_S	94_V	0.724	1.00
459_A	492_R	0.722	1.00
210_V	226_L	0.720	1.00
508_A	513_L	0.720	1.00
422_E	425_A	0.719	1.00
68_C	191_Q	0.718	1.00
89_I	185_F	0.716	1.00
66_L	124_V	0.716	1.00
265_T	302_P	0.715	1.00
127_T	131_L	0.714	1.00
31_T	35_A	0.713	1.00
302_P	354_G	0.713	1.00
420_K	424_T	0.712	1.00
439_G	450_A	0.711	1.00
111_H	220_A	0.711	1.00
392_E	405_E	0.710	1.00
61_K	65_F	0.709	1.00
80_M	131_L	0.708	1.00
80_M	125_I	0.706	1.00
132_F	136_I	0.704	1.00
287_L	291_K	0.701	1.00
245_V	300_L	0.701	1.00
327_S	350_K	0.700	1.00
338_E	341_Q	0.700	1.00
424_T	428_L	0.699	1.00
454_K	494_E	0.699	1.00
514_D	526_V	0.698	1.00
58_D	85_P	0.697	1.00
488_P	492_R	0.697	1.00
389_I	441_M	0.697	1.00
64_A	197_L	0.694	1.00
70_G	99_G	0.693	1.00
101_V	264_L	0.692	1.00
408_V	413_V	0.691	1.00
28_S	31_T	0.690	1.00
100_I	418_W	0.689	1.00
299_T	326_K	0.689	1.00
458_I	465_Y	0.688	1.00
281_L	289_T	0.688	1.00
39_D	51_T	0.687	1.00
401_Y	443_E	0.686	1.00
119_D	223_G	0.682	1.00
308_Y	330_S	0.681	1.00
64_A	196_L	0.680	1.00
81_L	87_T	0.680	1.00
288_E	292_I	0.679	1.00
354_G	363_V	0.678	1.00
501_V	535_E	0.677	1.00
131_L	134_K	0.676	1.00
293_I	298_P	0.675	1.00
517_A	521_L	0.674	1.00
27_Q	95_L	0.674	1.00
398_A	401_Y	0.672	1.00
319_H	322_L	0.670	1.00
72_Q	99_G	0.669	1.00
382_W	385_T	0.669	1.00
459_A	496_V	0.667	1.00
133_P	136_I	0.665	1.00
239_A	270_Y	0.663	1.00
28_S	32_D	0.663	1.00
63_A	93_G	0.663	1.00
309_I	342_K	0.662	1.00
257_P	260_H	0.662	1.00
472_A	516_F	0.660	1.00
378_I	439_G	0.660	1.00
400_P	443_E	0.658	1.00
497_K	553_E	0.658	1.00
125_I	135_A	0.657	1.00
61_K	193_K	0.657	1.00
390_Y	432_W	0.657	1.00
187_S	190_K	0.653	1.00
293_I	301_F	0.651	1.00
246_K	326_K	0.651	1.00
253_L	292_I	0.650	1.00
256_V	302_P	0.650	1.00
62_L	66_L	0.647	1.00
30_L	56_L	0.646	1.00
234_N	363_V	0.643	1.00
291_K	320_Y	0.642	1.00
537_P	549_L	0.642	1.00
388_A	409_K	0.642	1.00
334_A	449_I	0.641	1.00
355_Y	364_T	0.640	1.00
84_C	128_L	0.639	1.00
265_T	363_V	0.638	1.00
489_D	492_R	0.637	1.00
72_Q	123_S	0.637	1.00
100_I	211_L	0.637	1.00
78_A	120_A	0.635	1.00
360_A	364_T	0.635	1.00
265_T	362_P	0.634	1.00
245_V	276_F	0.634	1.00
479_I	500_V	0.633	1.00
49_K	277_E	0.631	1.00
109_T	112_E	0.630	1.00
469_V	496_V	0.630	1.00
91_Y	95_L	0.630	1.00
189_M	192_E	0.629	1.00
294_D	324_S	0.629	1.00
473_L	484_V	0.629	1.00
451_D	466_P	0.628	1.00
27_Q	31_T	0.627	1.00
291_K	294_D	0.627	1.00
301_F	328_C	0.627	1.00
252_V	276_F	0.625	1.00
81_L	90_S	0.625	1.00
29_I	232_L	0.624	1.00
60_L	197_L	0.622	1.00
219_G	465_Y	0.621	1.00
284_F	289_T	0.621	1.00
33_S	275_G	0.621	1.00
136_I	139_K	0.620	1.00
294_D	323_S	0.620	1.00
289_T	293_I	0.620	1.00
77_V	124_V	0.619	1.00
236_E	240_A	0.613	1.00
478_A	516_F	0.610	1.00
76_R	122_V	0.610	1.00
81_L	127_T	0.610	1.00
293_I	297_K	0.609	1.00
230_N	415_K	0.609	1.00
483_V	546_R	0.608	1.00
59_A	63_A	0.607	1.00
259_F	462_Y	0.606	1.00
135_A	138_M	0.604	1.00
206_H	415_K	0.604	1.00
494_E	550_L	0.603	1.00
31_T	59_A	0.602	1.00
76_R	419_N	0.602	1.00
266_A	302_P	0.601	1.00
252_V	300_L	0.601	1.00
455_D	470_E	0.600	1.00
479_I	482_I	0.599	1.00
480_Q	502_L	0.599	1.00
514_D	517_A	0.598	1.00
414_M	427_V	0.598	1.00
331_G	354_G	0.597	1.00
487_V	495_T	0.597	1.00
61_K	64_A	0.597	1.00
102_V	213_Y	0.595	1.00
67_Q	199_I	0.594	1.00
127_T	164_Y	0.594	1.00
103_Q	212_Q	0.594	1.00
91_Y	269_N	0.593	1.00
488_P	493_G	0.593	1.00
202_I	228_H	0.592	1.00
302_P	331_G	0.592	1.00
253_L	293_I	0.591	1.00
309_I	313_H	0.591	1.00
60_L	67_Q	0.590	1.00
50_L	54_D	0.590	1.00
62_L	185_F	0.587	1.00
64_A	192_E	0.587	1.00
86_Q	128_L	0.586	1.00
92_Y	269_N	0.583	1.00
59_A	62_L	0.582	1.00
62_L	65_F	0.579	1.00
523_P	526_V	0.578	1.00
482_I	517_A	0.578	1.00
309_I	338_E	0.577	1.00
420_K	426_A	0.575	1.00
234_N	238_C	0.575	1.00
466_P	486_G	0.575	1.00
305_P	333_A	0.574	1.00
343_F	351_L	0.574	1.00
79_V	94_V	0.574	1.00
480_Q	504_K	0.573	1.00
352_V	368_F	0.572	1.00
254_G	278_M	0.571	1.00
499_F	531_E	0.570	1.00
246_K	299_T	0.569	1.00
45_F	282_P	0.568	1.00
357_L	435_T	0.567	1.00
305_P	339_V	0.566	1.00
186_A	190_K	0.566	1.00
318_Q	346_V	0.566	1.00
35_A	56_L	0.566	1.00
115_Y	120_A	0.566	1.00
120_A	223_G	0.564	1.00
185_F	189_M	0.564	1.00
198_T	202_I	0.563	1.00
242_M	383_P	0.561	1.00
413_V	433_L	0.560	1.00
331_G	363_V	0.559	1.00
193_K	196_L	0.558	1.00
481_E	536_L	0.558	1.00
81_L	128_L	0.557	1.00
526_V	530_Y	0.557	1.00
335_L	353_E	0.557	1.00
41_T	296_H	0.556	1.00
41_T	251_K	0.553	1.00
183_H	186_A	0.551	1.00
472_A	521_L	0.551	1.00
365_H	378_I	0.551	1.00
43_I	50_L	0.550	1.00
43_I	278_M	0.549	1.00
210_V	264_L	0.547	1.00
330_S	351_L	0.547	1.00
489_D	493_G	0.545	1.00
510_T	529_A	0.545	1.00
255_I	303_G	0.544	1.00
245_V	250_E	0.543	1.00
403_H	453_K	0.543	1.00
29_I	273_K	0.543	1.00
502_L	506_A	0.543	1.00
80_M	134_K	0.543	1.00
61_K	195_E	0.542	1.00
451_D	455_D	0.542	1.00
473_L	517_A	0.539	1.00
469_V	527_P	0.539	1.00
235_T	269_N	0.539	1.00
459_A	494_E	0.538	1.00
210_V	231_I	0.537	1.00
454_K	463_N	0.536	1.00
421_P	424_T	0.536	1.00
73_K	200_P	0.536	1.00
67_Q	197_L	0.536	1.00
328_C	349_G	0.535	1.00
531_E	552_E	0.535	1.00
73_K	202_I	0.534	1.00
262_Y	354_G	0.534	1.00
79_V	87_T	0.533	1.00
80_M	135_A	0.533	1.00
74_G	208_I	0.531	1.00
330_S	353_E	0.531	1.00
330_S	343_F	0.529	1.00
477_E	516_F	0.529	1.00
478_A	508_A	0.528	1.00
341_Q	344_E	0.527	1.00
402_E	440_Y	0.527	1.00
289_T	307_I	0.527	1.00
188_C	192_E	0.526	1.00
267_V	271_S	0.526	1.00
467_R	470_E	0.526	1.00
262_Y	329_L	0.526	1.00
357_L	360_A	0.525	1.00
58_D	189_M	0.525	1.00
390_Y	395_G	0.524	1.00
120_A	211_L	0.524	1.00
74_G	99_G	0.523	1.00
218_T	222_K	0.523	1.00
457_I	486_G	0.522	1.00
37_F	275_G	0.522	1.00
368_F	371_G	0.520	1.00
127_T	132_F	0.520	1.00
485_A	550_L	0.519	1.00
234_N	364_T	0.519	1.00
290_L	322_L	0.519	1.00
416_G	421_P	0.519	1.00
100_I	103_Q	0.519	1.00
340_K	351_L	0.519	1.00
65_F	189_M	0.518	1.00
397_L	441_M	0.518	1.00
127_T	162_I	0.516	1.00
52_F	272_I	0.516	1.00
104_T	117_L	0.515	1.00
102_V	116_Q	0.515	1.00
470_E	498_A	0.514	1.00
44_S	47_G	0.514	1.00
456_I	463_N	0.514	1.00
80_M	104_T	0.513	1.00
66_L	70_G	0.513	1.00
353_E	378_I	0.512	1.00
401_Y	440_Y	0.512	1.00
237_M	382_W	0.511	1.00
397_L	407_I	0.511	1.00
207_D	228_H	0.511	1.00
211_L	225_M	0.511	1.00
501_V	532_F	0.510	1.00
428_L	433_L	0.510	1.00
414_M	433_L	0.510	1.00
385_T	410_G	0.509	1.00
71_L	123_S	0.507	1.00
451_D	550_L	0.507	1.00
451_D	467_R	0.506	1.00
254_G	280_L	0.505	1.00
277_E	296_H	0.505	1.00
315_P	318_Q	0.504	1.00
37_F	247_E	0.503	1.00
27_Q	96_F	0.503	1.00
473_L	479_I	0.503	1.00
476_H	479_I	0.502	1.00
509_D	532_F	0.502	1.00
108_Y	259_F	0.502	1.00
292_I	295_K	0.501	1.00
75_D	124_V	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tsyA	2	0.7589	100	0.138	Contact Map
1mdbA	1	0.9482	100	0.14	Contact Map
3etcA	2	0.8982	100	0.151	Contact Map
2d1sA	1	0.9357	100	0.152	Contact Map
3ni2A	1	0.9232	100	0.153	Contact Map
3g7sA	2	0.85	100	0.155	Contact Map
3o83A	1	0.7661	100	0.155	Contact Map
3rixA	1	0.7357	100	0.161	Contact Map
1pg4A	1	0.975	100	0.163	Contact Map
1v25A	2	0.8696	100	0.168	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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