GREMLIN Database
LYTS - Sensor protein LytS
UniProt: P94513 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 593 (504)
Sequences: 4439 (4037)
Seq/√Len: 179.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
514_A571_E4.6401.00
565_E568_K4.4101.00
546_L560_L4.0831.00
511_M574_F4.0001.00
476_V550_L3.7631.00
561_H573_S3.6671.00
547_N551_I3.6581.00
525_L562_I3.6101.00
510_Y575_Q3.5121.00
521_P524_V3.4971.00
550_L574_F3.4581.00
562_I572_V3.4261.00
501_C512_K3.3901.00
496_C516_N3.3081.00
362_Q365_L3.3061.00
476_V549_R3.1601.00
512_K573_S3.1311.00
433_I468_E3.0561.00
515_D519_G3.0201.00
549_R553_L2.9761.00
468_E553_L2.8551.00
434_P437_K2.8291.00
373_K377_D2.8281.00
564_S567_H2.7241.00
366_G369_E2.6841.00
508_S575_Q2.6251.00
512_K571_E2.6001.00
359_F362_Q2.5741.00
501_C514_A2.4971.00
476_V546_L2.4801.00
377_D381_K2.4541.00
564_S570_T2.4271.00
376_K380_I2.3911.00
497_K516_N2.3541.00
477_L511_M2.2921.00
556_Q561_H2.2771.00
550_L555_G2.2611.00
510_Y573_S2.2391.00
503_L512_K2.2371.00
499_T514_A2.2241.00
373_K376_K2.2211.00
564_S568_K2.2061.00
460_E499_T2.2021.00
520_I524_V2.1981.00
525_L564_S2.1771.00
520_I528_L2.1461.00
345_S348_E2.1331.00
362_Q366_G2.1311.00
359_F363_L2.1051.00
241_N247_A2.0811.00
524_V527_E2.0461.00
458_K497_K2.0371.00
505_D510_Y1.9991.00
377_D380_I1.9941.00
248_A252_K1.9751.00
373_K380_I1.9611.00
344_L348_E1.9301.00
221_H225_T1.9091.00
372_S375_L1.9021.00
563_S573_S1.8861.00
521_P566_V1.8721.00
562_I570_T1.8611.00
374_L377_D1.8491.00
462_N501_C1.8471.00
476_V574_F1.8471.00
355_L359_F1.8411.00
431_L470_I1.8141.00
563_S571_E1.8111.00
389_P394_N1.8021.00
468_E473_P1.7881.00
481_V500_V1.7691.00
375_L379_E1.7611.00
242_S247_A1.7471.00
243_C247_A1.7401.00
529_G560_L1.7351.00
323_P326_S1.7241.00
319_A323_P1.7201.00
368_A371_Q1.7201.00
332_G336_M1.7181.00
391_F475_F1.7161.00
392_L410_T1.7141.00
217_A220_T1.7071.00
509_V578_M1.6901.00
352_A362_Q1.6861.00
365_L369_E1.6721.00
223_V227_A1.6601.00
380_I384_Q1.6531.00
551_I556_Q1.6461.00
220_T224_L1.6401.00
482_E486_R1.6131.00
355_L358_L1.6101.00
391_F395_A1.5911.00
503_L510_Y1.5901.00
522_P525_L1.5891.00
450_Q453_F1.5521.00
472_I475_F1.5461.00
533_F536_K1.5441.00
449_E452_R1.5421.00
392_L413_L1.5411.00
556_Q575_Q1.5351.00
504_S578_M1.5331.00
376_K381_K1.5211.00
363_L366_G1.5131.00
360_S363_L1.4891.00
352_A355_L1.4881.00
365_L368_A1.4821.00
348_E351_L1.4771.00
220_T223_V1.4771.00
49_S52_S1.4741.00
393_F418_S1.4631.00
244_K247_A1.4631.00
354_G359_F1.4491.00
361_T365_L1.4481.00
361_T364_E1.4381.00
502_V511_M1.4321.00
354_G362_Q1.4301.00
534_P537_E1.4271.00
378_A381_K1.4271.00
460_E497_K1.4181.00
332_G337_Y1.4171.00
520_I525_L1.4151.00
348_E352_A1.4071.00
394_N410_T1.4051.00
354_G358_L1.4031.00
541_T545_N1.3911.00
463_I467_L1.3891.00
256_T260_S1.3871.00
529_G572_V1.3831.00
416_Q472_I1.3801.00
441_H474_P1.3781.00
332_G339_K1.3671.00
411_R415_L1.3651.00
387_V417_L1.3611.00
401_A405_T1.3541.00
487_H536_K1.3421.00
480_L572_V1.3401.00
346_Q349_E1.3391.00
357_M361_T1.3351.00
435_L511_M1.3341.00
393_F401_A1.3311.00
358_L362_Q1.3291.00
442_L481_V1.3261.00
493_Q516_N1.3111.00
323_P332_G1.3111.00
332_G335_K1.3101.00
356_A362_Q1.3041.00
373_K381_K1.3031.00
436_S440_N1.2931.00
510_Y561_H1.2881.00
250_I254_T1.2871.00
83_A87_I1.2771.00
375_L378_A1.2731.00
472_I549_R1.2701.00
86_R89_G1.2671.00
323_P336_M1.2661.00
410_T413_L1.2601.00
328_G331_I1.2571.00
352_A356_A1.2521.00
247_A250_I1.2471.00
246_V250_I1.2461.00
290_K294_K1.2391.00
358_L361_T1.2321.00
348_E355_L1.2301.00
247_A251_H1.2211.00
515_D569_G1.2141.00
398_T402_L1.2131.00
561_H574_F1.2121.00
477_L481_V1.2121.00
389_P395_A1.2021.00
42_A45_I1.1981.00
353_E357_M1.1971.00
400_S411_R1.1971.00
372_S376_K1.1901.00
272_G275_M1.1891.00
374_L380_I1.1881.00
373_K379_E1.1881.00
433_I473_P1.1841.00
345_S349_E1.1841.00
139_G142_F1.1731.00
493_Q496_C1.1721.00
165_Q169_I1.1711.00
391_F413_L1.1691.00
362_Q368_A1.1651.00
366_G370_L1.1641.00
224_L228_D1.1611.00
317_H323_P1.1611.00
455_G459_I1.1601.00
336_M339_K1.1551.00
393_F411_R1.1491.00
550_L576_V1.1461.00
137_L140_R1.1451.00
396_I414_L1.1441.00
544_Y548_Q1.1401.00
367_E371_Q1.1301.00
327_N331_I1.1301.00
436_S502_V1.1211.00
225_T229_Q1.1201.00
533_F537_E1.1161.00
520_I564_S1.1161.00
384_Q389_P1.1151.00
360_S364_E1.1151.00
532_P536_K1.1131.00
133_V139_G1.1101.00
480_L574_F1.1081.00
532_P535_S1.1081.00
469_Q472_I1.1031.00
518_R536_K1.1001.00
350_E354_G1.1001.00
351_L356_A1.0981.00
381_K384_Q1.0961.00
257_D260_S1.0951.00
528_L562_I1.0941.00
333_T337_Y1.0941.00
332_G340_S1.0921.00
359_F365_L1.0901.00
462_N499_T1.0871.00
249_I253_L1.0841.00
389_P393_F1.0781.00
354_G357_M1.0701.00
464_D467_L1.0701.00
445_Y449_E1.0671.00
393_F410_T1.0641.00
221_H224_L1.0591.00
241_N244_K1.0581.00
487_H534_P1.0581.00
378_A382_A1.0561.00
255_G260_S1.0551.00
341_P345_S1.0551.00
358_L365_L1.0531.00
401_A475_F1.0531.00
344_L352_A1.0511.00
386_Q389_P1.0511.00
271_V274_G1.0481.00
80_G87_I1.0411.00
223_V226_I1.0270.99
356_A359_F1.0270.99
318_A323_P1.0220.99
519_G569_G1.0200.99
323_P331_I1.0190.99
327_N330_T1.0160.99
135_A141_Y1.0160.99
123_S131_A1.0130.99
381_K386_Q1.0110.99
132_G137_L1.0090.99
520_I570_T1.0080.99
395_A545_N1.0070.99
532_P537_E1.0060.99
348_E356_A1.0060.99
213_E216_R1.0050.99
447_S451_A1.0020.99
438_E473_P1.0010.99
77_D80_G0.9990.99
54_I58_T0.9980.99
463_I502_V0.9960.99
247_A259_V0.9880.99
499_T516_N0.9800.99
422_R539_T0.9790.99
354_G365_L0.9770.99
555_G577_P0.9720.99
502_V509_V0.9670.99
162_E169_I0.9650.99
359_F366_G0.9640.99
244_K248_A0.9620.99
529_G562_I0.9550.99
328_G333_T0.9550.99
409_K474_P0.9550.99
435_L509_V0.9540.99
400_S408_E0.9510.99
352_A359_F0.9500.99
392_L396_I0.9500.99
59_G63_Q0.9470.99
394_N411_R0.9460.99
106_G110_G0.9460.99
394_N401_A0.9390.99
380_I383_L0.9310.99
485_L498_V0.9310.99
162_E165_Q0.9300.99
555_G576_V0.9290.99
394_N487_H0.9290.99
396_I418_S0.9270.99
475_F545_N0.9240.99
376_K379_E0.9230.99
333_T340_S0.9160.99
348_E354_G0.9160.99
386_Q487_H0.9130.99
223_V228_D0.9120.99
181_E185_M0.9120.99
247_A260_S0.9120.99
164_L168_I0.9020.99
394_N534_P0.9010.99
493_Q553_L0.8990.99
341_P344_L0.8970.99
230_T233_F0.8970.99
349_E353_E0.8970.99
379_E531_K0.8940.99
329_N332_G0.8930.99
392_L414_L0.8920.99
352_A358_L0.8900.99
291_K295_T0.8880.99
247_A253_L0.8870.99
58_T61_E0.8870.99
137_L141_Y0.8870.99
288_L292_V0.8860.98
57_Y61_E0.8840.98
378_A391_F0.8800.98
45_I52_S0.8780.98
383_L386_Q0.8770.98
258_A262_T0.8760.98
382_A386_Q0.8740.98
419_V423_S0.8700.98
45_I49_S0.8690.98
325_T331_I0.8670.98
356_A361_T0.8660.98
166_M169_I0.8660.98
343_G349_E0.8660.98
480_L546_L0.8650.98
271_V277_H0.8620.98
163_S167_I0.8610.98
247_A255_G0.8600.98
386_Q394_N0.8600.98
438_E442_L0.8590.98
57_Y60_I0.8570.98
474_P478_Q0.8550.98
347_V352_A0.8540.98
213_E217_A0.8520.98
334_L337_Y0.8490.98
385_A395_A0.8460.98
123_S126_V0.8450.98
127_S131_A0.8420.98
527_E530_K0.8410.98
154_A158_G0.8350.98
237_G247_A0.8340.98
241_N245_S0.8310.98
123_S127_S0.8310.98
162_E166_M0.8310.98
84_N87_I0.8290.98
137_L142_F0.8280.98
195_G203_S0.8250.98
284_L289_S0.8250.98
391_F478_Q0.8240.98
505_D575_Q0.8190.97
321_V333_T0.8170.97
376_K486_R0.8160.97
135_A139_G0.8150.97
153_I157_V0.8090.97
80_G83_A0.8070.97
79_S83_A0.8070.97
230_T235_R0.8050.97
202_L206_Q0.8040.97
400_S403_C0.8030.97
391_F394_N0.8030.97
391_F545_N0.8020.97
321_V335_K0.7990.97
274_G278_H0.7940.97
482_E487_H0.7930.97
442_L445_Y0.7910.97
364_E368_A0.7890.97
550_L553_L0.7880.97
349_E352_A0.7880.97
83_A91_E0.7870.97
518_R564_S0.7870.97
83_A86_R0.7850.97
132_G136_G0.7850.97
528_L572_V0.7850.97
379_E382_A0.7830.97
518_R570_T0.7820.97
418_S422_R0.7800.97
203_S206_Q0.7790.97
363_L369_E0.7790.97
74_F77_D0.7790.97
391_F472_I0.7770.97
438_E474_P0.7760.97
525_L529_G0.7750.97
263_D266_K0.7700.96
273_A276_D0.7700.96
487_H516_N0.7650.96
376_K384_Q0.7650.96
250_I253_L0.7640.96
289_S293_I0.7620.96
102_G113_R0.7620.96
351_L355_L0.7620.96
511_M576_V0.7610.96
389_P486_R0.7610.96
334_L339_K0.7600.96
317_H320_I0.7590.96
328_G340_S0.7590.96
91_E95_L0.7590.96
445_Y448_L0.7580.96
337_Y340_S0.7550.96
550_L560_L0.7550.96
161_M165_Q0.7540.96
384_Q486_R0.7490.96
121_A124_C0.7480.96
323_P327_N0.7470.96
486_R534_P0.7460.96
195_G202_L0.7460.96
79_S82_I0.7450.96
205_I208_I0.7450.96
381_K531_K0.7450.96
522_P565_E0.7440.96
353_E358_L0.7440.96
381_K389_P0.7420.96
148_M151_P0.7420.96
457_Y461_L0.7420.96
391_F531_K0.7400.95
243_C246_V0.7400.95
422_R425_L0.7380.95
139_G143_T0.7360.95
219_E222_R0.7360.95
271_V278_H0.7350.95
242_S250_I0.7340.95
383_L389_P0.7330.95
353_E356_A0.7320.95
215_A218_L0.7270.95
86_R92_I0.7270.95
44_L47_I0.7250.95
440_N444_A0.7240.95
102_G110_G0.7230.95
110_G114_F0.7230.95
245_S254_T0.7210.95
126_V133_V0.7190.95
211_K214_Q0.7190.95
134_L138_I0.7170.95
386_Q410_T0.7160.95
561_H575_Q0.7150.95
398_T403_C0.7150.95
475_F478_Q0.7140.94
479_V538_G0.7130.94
358_L363_L0.7130.94
420_Y548_Q0.7090.94
241_N255_G0.7080.94
196_T199_F0.7080.94
348_E362_Q0.7070.94
473_P477_L0.7070.94
129_I133_V0.7060.94
241_N249_I0.7040.94
356_A360_S0.7040.94
229_Q232_P0.7020.94
367_E370_L0.7010.94
121_A132_G0.7010.94
285_I288_L0.7000.94
124_C127_S0.7000.94
318_A325_T0.6990.94
229_Q233_F0.6990.94
333_T336_M0.6990.94
232_P235_R0.6970.94
398_T401_A0.6960.94
295_T299_M0.6960.94
378_A385_A0.6960.94
445_Y478_Q0.6960.94
257_D262_T0.6950.94
197_G202_L0.6910.93
178_D185_M0.6890.93
271_V276_D0.6880.93
357_M362_Q0.6870.93
574_F577_P0.6870.93
372_S377_D0.6860.93
520_I562_I0.6860.93
355_L362_Q0.6860.93
87_I90_V0.6840.93
416_Q545_N0.6840.93
534_P539_T0.6840.93
165_Q168_I0.6840.93
77_D89_G0.6820.93
422_R535_S0.6810.93
467_L502_V0.6800.93
200_I203_S0.6800.93
231_L234_F0.6790.93
254_T260_S0.6780.93
323_P335_K0.6780.93
288_L293_I0.6780.93
55_S59_G0.6770.93
226_I230_T0.6750.93
127_S132_G0.6740.93
548_Q551_I0.6740.93
270_H274_G0.6730.93
393_F486_R0.6720.93
136_G140_R0.6720.93
508_S556_Q0.6720.93
392_L532_P0.6710.92
391_F397_N0.6700.92
203_S207_A0.6700.92
256_T259_V0.6690.92
155_A162_E0.6680.92
348_E358_L0.6680.92
408_E412_K0.6680.92
481_V498_V0.6660.92
322_L332_G0.6660.92
282_K285_I0.6650.92
56_N59_G0.6650.92
287_G296_G0.6650.92
486_R533_F0.6640.92
420_Y544_Y0.6640.92
386_Q391_F0.6630.92
399_I403_C0.6620.92
243_C249_I0.6600.92
328_G332_G0.6590.92
216_R219_E0.6590.92
48_F55_S0.6580.92
160_G166_M0.6570.92
228_D235_R0.6570.92
473_P553_L0.6560.92
389_P487_H0.6550.92
397_N402_L0.6550.92
121_A125_A0.6540.92
128_S131_A0.6540.92
356_A365_L0.6540.92
546_L574_F0.6530.91
393_F416_Q0.6520.91
396_I405_T0.6520.91
334_L340_S0.6520.91
322_L336_M0.6510.91
274_G277_H0.6500.91
350_E353_E0.6500.91
231_L236_Q0.6490.91
475_F549_R0.6470.91
166_M170_L0.6440.91
291_K294_K0.6440.91
247_A254_T0.6430.91
79_S86_R0.6430.91
344_L354_G0.6430.91
417_L421_F0.6420.91
106_G113_R0.6410.91
54_I57_Y0.6410.91
53_I56_N0.6410.91
395_A416_Q0.6400.91
54_I63_Q0.6400.91
399_I550_L0.6390.91
220_T227_A0.6370.90
377_D397_N0.6360.90
317_H321_V0.6360.90
385_A391_F0.6350.90
335_K338_F0.6350.90
357_M360_S0.6350.90
49_S58_T0.6320.90
102_G106_G0.6320.90
487_H533_F0.6310.90
223_V233_F0.6310.90
126_V131_A0.6300.90
380_I389_P0.6300.90
288_L298_I0.6300.90
53_I57_Y0.6290.90
386_Q486_R0.6280.90
484_A498_V0.6270.90
472_I553_L0.6260.90
399_I555_G0.6260.90
228_D234_F0.6260.90
379_E386_Q0.6250.90
341_P348_E0.6230.89
229_Q235_R0.6230.89
384_Q394_N0.6220.89
335_K339_K0.6210.89
394_N398_T0.6210.89
531_K548_Q0.6200.89
287_G291_K0.6200.89
286_T292_V0.6190.89
55_S60_I0.6190.89
323_P328_G0.6190.89
212_E216_R0.6160.89
191_I194_N0.6160.89
439_L511_M0.6120.89
195_G198_S0.6120.89
376_K383_L0.6120.89
374_L378_A0.6110.89
411_R424_N0.6100.88
422_R482_E0.6100.88
120_T123_S0.6100.88
374_L381_K0.6100.88
223_V231_L0.6080.88
202_L207_A0.6080.88
385_A421_F0.6070.88
179_A182_L0.6060.88
323_P333_T0.6040.88
224_L230_T0.6030.88
370_L373_K0.6020.88
546_L549_R0.6020.88
330_T337_Y0.6010.88
89_G93_G0.6010.88
211_K215_A0.5990.88
191_I195_G0.5990.88
55_S58_T0.5980.87
227_A230_T0.5970.87
480_L550_L0.5970.87
532_P539_T0.5970.87
320_I323_P0.5960.87
394_N539_T0.5950.87
120_T125_A0.5940.87
220_T225_T0.5920.87
394_N486_R0.5910.87
180_W183_V0.5910.87
140_R144_K0.5910.87
198_S201_F0.5900.87
545_N549_R0.5900.87
125_A132_G0.5900.87
361_T366_G0.5890.87
49_S54_I0.5890.87
361_T369_E0.5890.87
384_Q549_R0.5880.87
325_T328_G0.5880.87
292_V295_T0.5870.86
186_I189_P0.5870.86
386_Q393_F0.5870.86
230_T236_Q0.5870.86
49_S59_G0.5850.86
77_D84_N0.5840.86
243_C250_I0.5840.86
194_N202_L0.5820.86
242_S246_V0.5810.86
47_I54_I0.5810.86
382_A385_A0.5810.86
122_L127_S0.5790.86
219_E223_V0.5780.86
389_P392_L0.5770.86
231_L235_R0.5760.85
389_P401_A0.5760.85
399_I475_F0.5750.85
321_V325_T0.5750.85
89_G94_G0.5740.85
224_L227_A0.5740.85
45_I63_Q0.5740.85
549_R552_G0.5730.85
217_A221_H0.5730.85
49_S61_E0.5730.85
413_L421_F0.5720.85
223_V230_T0.5690.85
54_I61_E0.5690.85
392_L417_L0.5680.85
127_S130_L0.5670.85
446_L478_Q0.5670.85
99_P102_G0.5670.85
410_T414_L0.5660.84
380_I487_H0.5660.84
394_N418_S0.5660.84
282_K286_T0.5650.84
49_S63_Q0.5650.84
317_H325_T0.5650.84
44_L48_F0.5630.84
403_C406_D0.5630.84
436_S463_I0.5620.84
251_H255_G0.5610.84
462_N503_L0.5610.84
478_Q481_V0.5610.84
414_L553_L0.5600.84
43_I47_I0.5600.84
384_Q397_N0.5590.84
383_L552_G0.5590.84
393_F478_Q0.5570.84
248_A251_H0.5570.84
385_A496_C0.5570.84
521_P528_L0.5570.84
157_V161_M0.5550.83
233_F236_Q0.5550.83
450_Q485_L0.5550.83
48_F62_I0.5550.83
449_E453_F0.5540.83
249_I255_G0.5540.83
42_A46_S0.5530.83
187_G191_I0.5530.83
82_I86_R0.5510.83
322_L325_T0.5510.83
402_L412_K0.5500.83
295_T298_I0.5500.83
54_I59_G0.5490.83
405_T418_S0.5480.83
450_Q455_G0.5480.83
393_F402_L0.5470.82
194_N197_G0.5460.82
77_D86_R0.5460.82
283_S286_T0.5460.82
229_Q236_Q0.5460.82
392_L395_A0.5460.82
394_N405_T0.5450.82
468_E555_G0.5440.82
124_C132_G0.5440.82
79_S87_I0.5430.82
472_I545_N0.5430.82
332_G338_F0.5420.82
395_A487_H0.5420.82
342_A345_S0.5420.82
395_A479_V0.5410.82
327_N333_T0.5390.81
393_F415_L0.5390.81
234_F240_E0.5390.81
221_H228_D0.5380.81
352_A363_L0.5370.81
321_V329_N0.5370.81
417_L424_N0.5370.81
410_T417_L0.5360.81
387_V392_L0.5350.81
246_V254_T0.5350.81
349_E354_G0.5340.81
397_N400_S0.5340.81
120_T124_C0.5330.81
194_N198_S0.5310.81
363_L367_E0.5310.81
397_N552_G0.5290.80
106_G111_L0.5290.80
212_E215_A0.5290.80
475_F546_L0.5290.80
472_I476_V0.5270.80
182_L186_I0.5270.80
333_T338_F0.5260.80
439_L502_V0.5260.80
423_S426_Q0.5260.80
487_H545_N0.5230.80
480_L543_L0.5230.80
246_V256_T0.5220.79
275_M279_I0.5210.79
381_K385_A0.5200.79
126_V137_L0.5200.79
48_F58_T0.5200.79
293_I296_G0.5200.79
450_Q498_V0.5190.79
228_D231_L0.5190.79
291_K296_G0.5180.79
246_V249_I0.5170.79
106_G112_H0.5160.79
45_I56_N0.5160.79
420_Y532_P0.5160.79
247_A262_T0.5150.79
258_A261_L0.5150.79
135_A140_R0.5150.79
293_I298_I0.5140.78
437_K441_H0.5140.78
194_N199_F0.5140.78
349_E356_A0.5140.78
214_Q218_L0.5110.78
49_S105_I0.5110.78
397_N401_A0.5110.78
226_I233_F0.5110.78
160_G164_L0.5110.78
347_V351_L0.5100.78
342_A348_E0.5090.78
394_N397_N0.5080.78
386_Q547_N0.5070.77
384_Q423_S0.5050.77
198_S205_I0.5050.77
318_A322_L0.5050.77
157_V162_E0.5040.77
351_L358_L0.5040.77
80_G95_L0.5040.77
380_I386_Q0.5040.77
476_V553_L0.5040.77
319_A322_L0.5040.77
214_Q217_A0.5040.77
84_N90_V0.5030.77
321_V326_S0.5030.77
132_G135_A0.5030.77
80_G84_N0.5020.77
364_E367_E0.5020.77
325_T330_T0.5020.77
451_A454_P0.5010.77
391_F479_V0.5010.77
47_I58_T0.5010.77
245_S249_I0.5000.76
401_A418_S0.5000.76
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4i5sA 2 0.5767 100 0.584 Contact Map
4gczA 2 0.575 100 0.59 Contact Map
3a0rA 2 0.5228 100 0.599 Contact Map
4bixA 2 0.3541 100 0.614 Contact Map
4ctiA 2 0.3558 100 0.617 Contact Map
3d36A 2 0.3356 100 0.617 Contact Map
4q20A 2 0.3508 100 0.619 Contact Map
4mpcA 2 0.4958 100 0.625 Contact Map
2c2aA 2 0.3558 100 0.628 Contact Map
3jz3A 2 0.2395 100 0.629 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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