BRNQ - BACSU - GREMLIN Contacts

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BRNQ - Branched-chain amino acid transport system carrier protein BrnQ

UniProt:	P94499	Sequences: MSKKVSASYIIIIGLMLFALFFGAGNLIFPPMLGQLAGKNVWVANAGFLVTGVGLPLLAITAFVFSGKQNLQSLASRVHPVFGIVFTTILYLAIGPFFAIPRSGNVSFEIGVKPFLSNDASPVSLIIFTILFFALACLLSLNPSKIIDIVGKFLTPIKLTFIGLLVAVALIRPIGTIQAPSKGYTSQAFFKGFQEGYLTLDALVAFVFGIIIVNALKEQGASTKKQLIVVCAKAAAIAAVLLAVMYTALSYMGASSVEELGILENGAEVLAKVSSYYFGSYGSILLGLMITVACLTTSVGLITACSSFFHELFPNISYKKIAVVLSVFSTLVANIGLTQLIKVSMPVLLTMYPIAISLIFLTFLHSVFKGKTEVYQGSLLFAFIISLFDGLKAAGIKIEVVNRIFTQILPMYNIGLGWLIPAIAGGICGYILSIFRTKTS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	440 (426)
Sequences:	1598 (1189)
Seq/√Len:	57.6

ECOLI - BRNQ
BACSU - BRNQ BRAB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
136_A	302_I	5.304	1.00
381_F	425_G	4.860	1.00
382_A	422_A	4.366	1.00
137_C	323_V	4.136	1.00
130_I	330_T	4.067	1.00
191_K	195_E	3.894	1.00
378_S	426_G	3.877	1.00
229_V	233_K	3.855	1.00
136_A	298_S	3.728	1.00
425_G	429_G	3.655	1.00
328_F	332_V	3.617	1.00
39_K	180_P	3.363	1.00
204_V	208_F	3.176	1.00
59_A	205_A	2.966	1.00
57_L	239_A	2.851	1.00
168_V	172_R	2.848	1.00
9_Y	219_Q	2.680	1.00
265_N	338_T	2.597	1.00
236_A	240_V	2.509	1.00
306_S	321_I	2.484	1.00
41_V	250_S	2.453	1.00
19_A	150_V	2.423	1.00
82_F	379_L	2.418	1.00
104_G	129_T	2.405	1.00
14_G	237_I	2.404	1.00
302_I	322_A	2.370	1.00
157_I	292_V	2.352	1.00
357_S	382_A	2.344	1.00
59_A	359_I	2.305	1.00
99_A	203_L	2.276	1.00
86_F	355_A	2.264	1.00
377_G	381_F	2.210	1.00
129_T	334_N	2.206	1.00
357_S	422_A	2.154	1.00
126_I	130_I	2.146	1.00
137_C	141_L	2.141	1.00
317_S	320_K	2.132	1.00
167_A	171_I	2.122	1.00
139_L	299_V	2.092	1.00
108_F	124_S	2.030	1.00
52_G	56_P	1.972	1.00
135_L	295_L	1.954	1.00
139_L	147_I	1.953	1.00
89_I	351_M	1.952	1.00
302_I	326_S	1.946	1.00
223_T	226_Q	1.930	1.00
316_I	320_K	1.916	1.00
216_L	227_L	1.910	1.00
22_F	27_L	1.904	1.00
78_V	82_F	1.883	1.00
15_L	155_T	1.882	1.00
136_A	326_S	1.867	1.00
137_C	322_A	1.804	0.99
420_I	424_A	1.784	0.99
103_S	298_S	1.778	0.99
37_A	44_A	1.764	0.99
335_I	339_Q	1.761	0.99
45_N	250_S	1.735	0.99
264_E	268_E	1.718	0.99
225_K	229_V	1.716	0.99
339_Q	342_K	1.711	0.99
131_L	135_L	1.704	0.99
163_G	167_A	1.693	0.99
104_G	133_F	1.688	0.99
139_L	295_L	1.688	0.99
104_G	134_A	1.685	0.99
61_T	232_A	1.664	0.99
372_T	376_Q	1.645	0.99
166_V	248_A	1.628	0.99
159_L	245_M	1.624	0.99
422_A	425_G	1.619	0.99
202_A	359_I	1.612	0.99
98_F	347_V	1.599	0.99
84_I	88_T	1.593	0.99
390_G	394_A	1.586	0.98
377_G	429_G	1.584	0.98
251_Y	255_S	1.563	0.98
158_K	289_M	1.560	0.98
6_S	9_Y	1.553	0.98
173_P	255_S	1.553	0.98
295_L	299_V	1.551	0.98
140_S	303_T	1.545	0.98
161_F	289_M	1.541	0.98
31_P	249_L	1.535	0.98
138_L	149_I	1.527	0.98
381_F	429_G	1.510	0.98
13_I	216_L	1.507	0.98
59_A	202_A	1.505	0.98
354_I	383_F	1.503	0.98
137_C	326_S	1.499	0.98
381_F	384_I	1.485	0.98
43_V	46_A	1.482	0.98
316_I	321_I	1.478	0.98
206_F	355_A	1.472	0.98
177_I	254_A	1.471	0.98
305_C	325_L	1.465	0.97
350_T	387_L	1.464	0.97
310_H	317_S	1.457	0.97
105_N	125_L	1.443	0.97
368_F	374_V	1.431	0.97
104_G	136_A	1.427	0.97
31_P	269_V	1.423	0.97
241_L	245_M	1.423	0.97
17_L	60_I	1.418	0.97
183_G	191_K	1.414	0.97
45_N	247_T	1.412	0.97
345_M	349_L	1.412	0.97
267_A	337_L	1.410	0.97
354_I	379_L	1.404	0.97
331_L	335_I	1.388	0.96
389_D	417_G	1.388	0.96
158_K	296_T	1.386	0.96
285_L	289_M	1.386	0.96
380_L	383_F	1.384	0.96
114_P	117_S	1.380	0.96
123_V	127_I	1.371	0.96
169_A	252_M	1.356	0.96
98_F	341_I	1.353	0.96
306_S	322_A	1.353	0.96
94_I	99_A	1.342	0.96
128_F	291_T	1.330	0.95
46_A	189_F	1.319	0.95
77_R	365_H	1.317	0.95
92_L	97_F	1.315	0.95
382_A	386_S	1.308	0.95
83_G	165_L	1.306	0.95
93_A	98_F	1.305	0.95
361_L	374_V	1.299	0.95
189_F	193_F	1.294	0.95
74_L	362_T	1.287	0.95
430_Y	434_I	1.269	0.94
125_L	129_T	1.256	0.94
20_L	99_A	1.254	0.94
377_G	425_G	1.249	0.94
263_L	269_V	1.248	0.94
377_G	432_L	1.246	0.94
160_T	164_L	1.246	0.94
99_A	309_F	1.243	0.94
20_L	150_V	1.237	0.93
168_V	278_F	1.237	0.93
20_L	340_L	1.231	0.93
127_I	131_L	1.225	0.93
82_F	354_I	1.219	0.93
198_L	340_L	1.219	0.93
173_P	256_S	1.214	0.93
365_H	375_Y	1.204	0.92
49_L	53_V	1.201	0.92
134_A	138_L	1.201	0.92
376_Q	380_L	1.199	0.92
302_I	325_L	1.196	0.92
49_L	243_A	1.190	0.92
100_I	329_S	1.185	0.92
411_M	414_I	1.185	0.92
269_V	273_V	1.184	0.92
321_I	325_L	1.183	0.92
373_E	377_G	1.181	0.92
365_H	370_G	1.181	0.92
19_A	296_T	1.179	0.92
129_T	333_A	1.175	0.91
350_T	390_G	1.170	0.91
54_G	96_P	1.150	0.91
313_F	321_I	1.147	0.90
81_V	85_V	1.143	0.90
377_G	428_C	1.138	0.90
357_S	379_L	1.128	0.90
76_S	83_G	1.127	0.90
420_I	427_I	1.121	0.89
15_L	19_A	1.120	0.89
32_M	36_L	1.117	0.89
330_T	333_A	1.107	0.89
47_G	189_F	1.102	0.89
126_I	330_T	1.101	0.89
125_L	334_N	1.100	0.88
71_L	87_T	1.096	0.88
238_A	242_L	1.076	0.87
63_F	209_G	1.073	0.87
403_R	407_Q	1.072	0.87
292_V	296_T	1.068	0.87
92_L	309_F	1.053	0.86
110_I	209_G	1.050	0.86
155_T	158_K	1.046	0.86
386_S	390_G	1.037	0.85
97_F	343_V	1.037	0.85
41_V	254_A	1.032	0.85
49_L	162_I	1.032	0.85
40_N	43_V	1.032	0.85
190_F	416_L	1.029	0.85
51_T	56_P	1.028	0.85
107_S	291_T	1.026	0.85
371_K	433_S	1.026	0.85
350_T	354_I	1.025	0.85
63_F	213_V	1.024	0.85
58_L	360_F	1.024	0.85
53_V	243_A	1.022	0.84
381_F	385_I	1.014	0.84
16_M	20_L	1.010	0.84
55_L	356_I	1.006	0.84
165_L	289_M	1.001	0.83
323_V	327_V	0.999	0.83
99_A	208_F	0.994	0.83
31_P	270_L	0.993	0.83
227_L	231_C	0.991	0.83
20_L	208_F	0.986	0.82
142_N	149_I	0.985	0.82
357_S	378_S	0.976	0.82
20_L	106_V	0.975	0.82
389_D	392_K	0.974	0.82
377_G	426_G	0.971	0.81
306_S	343_V	0.971	0.81
10_I	233_K	0.964	0.81
392_K	402_N	0.964	0.81
19_A	158_K	0.963	0.81
203_L	351_M	0.958	0.80
121_S	124_S	0.957	0.80
93_A	351_M	0.955	0.80
12_I	19_A	0.952	0.80
214_N	217_K	0.951	0.80
126_I	334_N	0.947	0.80
17_L	22_F	0.946	0.80
86_F	90_L	0.941	0.79
27_L	289_M	0.939	0.79
310_H	316_I	0.937	0.79
20_L	341_I	0.936	0.79
80_P	193_F	0.932	0.79
10_I	241_L	0.932	0.79
22_F	159_L	0.932	0.79
385_I	409_L	0.932	0.79
172_R	277_Y	0.932	0.79
208_F	212_I	0.931	0.78
62_A	66_S	0.929	0.78
432_L	435_F	0.929	0.78
8_S	12_I	0.928	0.78
108_F	128_F	0.922	0.78
301_L	344_S	0.919	0.78
107_S	128_F	0.919	0.78
78_V	379_L	0.918	0.77
242_L	296_T	0.917	0.77
21_F	60_I	0.916	0.77
240_V	401_V	0.913	0.77
42_W	46_A	0.911	0.77
384_I	428_C	0.908	0.77
158_K	293_A	0.907	0.77
381_F	422_A	0.907	0.77
170_L	251_Y	0.905	0.76
87_T	308_F	0.903	0.76
103_S	107_S	0.902	0.76
275_S	283_S	0.901	0.76
77_R	362_T	0.900	0.76
112_V	115_F	0.900	0.76
94_I	204_V	0.898	0.76
147_I	215_A	0.897	0.76
90_L	203_L	0.896	0.76
108_F	121_S	0.893	0.76
389_D	393_A	0.892	0.75
390_G	393_A	0.891	0.75
90_L	351_M	0.890	0.75
161_F	288_L	0.887	0.75
177_I	255_S	0.886	0.75
158_K	242_L	0.886	0.75
58_L	363_F	0.882	0.75
225_K	424_A	0.882	0.75
44_A	195_E	0.870	0.74
12_I	16_M	0.868	0.73
16_M	266_G	0.867	0.73
116_L	124_S	0.866	0.73
96_P	348_L	0.863	0.73
100_I	298_S	0.861	0.73
142_N	319_K	0.861	0.73
55_L	111_G	0.861	0.73
266_G	337_L	0.859	0.73
110_I	290_I	0.859	0.73
373_E	432_L	0.859	0.73
50_V	189_F	0.858	0.73
82_F	86_F	0.858	0.73
198_L	386_S	0.857	0.72
170_L	248_A	0.857	0.72
327_V	331_L	0.856	0.72
235_A	269_V	0.855	0.72
81_V	299_V	0.854	0.72
148_D	219_Q	0.854	0.72
238_A	292_V	0.850	0.72
154_L	297_T	0.848	0.72
237_I	356_I	0.848	0.72
146_I	245_M	0.847	0.72
98_F	344_S	0.846	0.71
171_I	174_I	0.842	0.71
62_A	362_T	0.837	0.71
155_T	296_T	0.836	0.71
57_L	267_A	0.836	0.71
178_Q	257_V	0.835	0.71
160_T	427_I	0.834	0.70
221_A	226_Q	0.834	0.70
264_E	338_T	0.833	0.70
331_L	399_E	0.831	0.70
227_L	234_A	0.829	0.70
135_L	291_T	0.825	0.70
61_T	228_I	0.823	0.69
407_Q	423_I	0.819	0.69
180_P	184_Y	0.819	0.69
165_L	274_S	0.816	0.69
63_F	74_L	0.813	0.68
103_S	329_S	0.811	0.68
76_S	80_P	0.810	0.68
274_S	278_F	0.808	0.68
145_K	148_D	0.804	0.68
72_Q	311_E	0.804	0.68
96_P	301_L	0.800	0.67
122_P	126_I	0.800	0.67
147_I	158_K	0.796	0.67
103_S	325_L	0.795	0.67
128_F	290_I	0.794	0.67
67_G	74_L	0.791	0.66
18_F	22_F	0.791	0.66
431_I	435_F	0.791	0.66
10_I	237_I	0.789	0.66
158_K	308_F	0.789	0.66
147_I	296_T	0.788	0.66
70_N	209_G	0.787	0.66
52_G	206_F	0.787	0.66
417_G	427_I	0.784	0.66
91_Y	207_V	0.782	0.65
97_F	332_V	0.782	0.65
145_K	149_I	0.780	0.65
344_S	350_T	0.780	0.65
290_I	344_S	0.779	0.65
20_L	60_I	0.779	0.65
408_I	424_A	0.777	0.65
22_F	241_L	0.773	0.65
117_S	354_I	0.771	0.64
186_S	190_F	0.771	0.64
95_G	99_A	0.771	0.64
373_E	376_Q	0.769	0.64
9_Y	14_G	0.766	0.64
158_K	292_V	0.766	0.64
207_V	242_L	0.765	0.64
110_I	271_A	0.764	0.64
182_K	186_S	0.763	0.64
21_F	205_A	0.762	0.63
124_S	127_I	0.758	0.63
94_I	306_S	0.758	0.63
277_Y	375_Y	0.753	0.62
20_L	98_F	0.751	0.62
399_E	402_N	0.751	0.62
349_L	393_A	0.751	0.62
225_K	384_I	0.751	0.62
75_A	358_L	0.749	0.62
88_T	309_F	0.744	0.62
105_N	248_A	0.744	0.62
19_A	242_L	0.742	0.61
132_F	289_M	0.742	0.61
35_Q	256_S	0.741	0.61
96_P	100_I	0.740	0.61
265_N	268_E	0.738	0.61
127_I	360_F	0.736	0.61
207_V	304_A	0.734	0.61
378_S	429_G	0.733	0.60
305_C	309_F	0.732	0.60
70_N	73_S	0.731	0.60
88_T	312_L	0.730	0.60
316_I	324_V	0.729	0.60
19_A	239_A	0.729	0.60
96_P	344_S	0.729	0.60
147_I	150_V	0.729	0.60
71_L	90_L	0.728	0.60
256_S	273_V	0.728	0.60
31_P	211_I	0.727	0.60
177_I	251_Y	0.725	0.60
251_Y	254_A	0.723	0.59
335_I	340_L	0.722	0.59
389_D	412_Y	0.721	0.59
108_F	159_L	0.718	0.59
135_L	138_L	0.718	0.59
384_I	397_K	0.717	0.59
296_T	308_F	0.717	0.59
128_F	166_V	0.716	0.59
150_V	351_M	0.716	0.59
189_F	195_E	0.716	0.59
289_M	340_L	0.716	0.59
19_A	198_L	0.715	0.58
91_Y	188_A	0.714	0.58
287_G	314_P	0.714	0.58
324_V	387_L	0.709	0.58
185_T	188_A	0.708	0.58
317_S	324_V	0.705	0.57
70_N	311_E	0.702	0.57
264_E	299_V	0.702	0.57
140_S	204_V	0.699	0.57
112_V	245_M	0.697	0.57
103_S	248_A	0.696	0.56
290_I	311_E	0.695	0.56
106_V	332_V	0.694	0.56
240_V	243_A	0.694	0.56
263_L	268_E	0.694	0.56
242_L	308_F	0.693	0.56
143_P	307_S	0.692	0.56
16_M	19_A	0.691	0.56
71_L	207_V	0.689	0.56
41_V	45_N	0.687	0.55
412_Y	417_G	0.686	0.55
6_S	46_A	0.686	0.55
123_V	167_A	0.684	0.55
399_E	403_R	0.684	0.55
127_I	424_A	0.684	0.55
411_M	416_L	0.683	0.55
14_G	241_L	0.682	0.55
98_F	340_L	0.682	0.55
99_A	301_L	0.680	0.55
174_I	255_S	0.679	0.55
26_N	29_F	0.678	0.54
308_F	312_L	0.678	0.54
107_S	283_S	0.677	0.54
327_V	330_T	0.675	0.54
59_A	241_L	0.675	0.54
208_F	301_L	0.671	0.54
64_V	235_A	0.670	0.54
97_F	347_V	0.669	0.54
109_E	113_K	0.668	0.53
225_K	288_L	0.667	0.53
58_L	359_I	0.665	0.53
25_G	29_F	0.665	0.53
202_A	349_L	0.665	0.53
90_L	239_A	0.663	0.53
65_F	211_I	0.660	0.53
366_S	369_K	0.659	0.52
210_I	305_C	0.659	0.52
134_A	137_C	0.659	0.52
230_V	340_L	0.659	0.52
64_V	200_L	0.658	0.52
184_Y	337_L	0.657	0.52
401_V	430_Y	0.657	0.52
361_L	375_Y	0.656	0.52
231_C	237_I	0.656	0.52
49_L	55_L	0.652	0.52
109_E	265_N	0.650	0.51
52_G	209_G	0.649	0.51
91_Y	300_G	0.649	0.51
373_E	423_I	0.647	0.51
184_Y	266_G	0.646	0.51
342_K	398_I	0.646	0.51
78_V	273_V	0.645	0.51
28_I	267_A	0.645	0.51
136_A	295_L	0.645	0.51
166_V	217_K	0.643	0.51
259_E	289_M	0.641	0.50
267_A	412_Y	0.641	0.50
134_A	275_S	0.641	0.50
81_V	84_I	0.641	0.50
21_F	234_A	0.641	0.50
61_T	235_A	0.640	0.50
115_F	146_I	0.634	0.50
33_L	105_N	0.633	0.50
52_G	274_S	0.633	0.50
132_F	375_Y	0.630	0.49
404_I	423_I	0.630	0.49
324_V	377_G	0.630	0.49
383_F	387_L	0.630	0.49
19_A	286_L	0.628	0.49
103_S	133_F	0.628	0.49
33_L	250_S	0.627	0.49
10_I	230_V	0.626	0.49
127_I	427_I	0.624	0.49
423_I	426_G	0.623	0.48
109_E	212_I	0.623	0.48
174_I	276_Y	0.623	0.48
100_I	104_G	0.623	0.48
361_L	378_S	0.619	0.48
327_V	427_I	0.617	0.48
21_F	26_N	0.616	0.48
140_S	322_A	0.616	0.48
427_I	431_I	0.615	0.48
349_L	390_G	0.614	0.47
259_E	276_Y	0.614	0.47
12_I	146_I	0.613	0.47
108_F	126_I	0.613	0.47
155_T	159_L	0.612	0.47
69_Q	73_S	0.612	0.47
221_A	230_V	0.612	0.47
357_S	360_F	0.612	0.47
284_I	386_S	0.611	0.47
184_Y	188_A	0.609	0.47
89_I	347_V	0.608	0.47
400_V	423_I	0.605	0.46
313_F	350_T	0.604	0.46
91_Y	266_G	0.603	0.46
73_S	76_S	0.603	0.46
22_F	273_V	0.601	0.46
178_Q	327_V	0.601	0.46
27_L	328_F	0.598	0.46
176_T	424_A	0.597	0.46
246_Y	294_C	0.597	0.46
8_S	76_S	0.597	0.46
409_L	417_G	0.595	0.45
85_V	327_V	0.595	0.45
53_V	193_F	0.595	0.45
52_G	239_A	0.594	0.45
272_K	275_S	0.594	0.45
110_I	250_S	0.594	0.45
46_A	50_V	0.593	0.45
364_L	367_V	0.593	0.45
388_F	405_F	0.592	0.45
104_G	241_L	0.592	0.45
221_A	248_A	0.589	0.45
95_G	301_L	0.586	0.44
257_V	260_L	0.585	0.44
91_Y	304_A	0.583	0.44
368_F	426_G	0.582	0.44
8_S	144_S	0.582	0.44
178_Q	186_S	0.582	0.44
195_E	266_G	0.579	0.44
398_I	403_R	0.578	0.44
95_G	208_F	0.578	0.44
283_S	287_G	0.578	0.44
67_G	72_Q	0.578	0.44
263_L	273_V	0.577	0.43
310_H	321_I	0.576	0.43
195_E	198_L	0.576	0.43
198_L	416_L	0.575	0.43
132_F	136_A	0.575	0.43
48_F	64_V	0.575	0.43
23_G	26_N	0.574	0.43
210_I	337_L	0.572	0.43
33_L	195_E	0.572	0.43
373_E	391_L	0.572	0.43
127_I	134_A	0.572	0.43
63_F	70_N	0.572	0.43
128_F	394_A	0.571	0.43
380_L	384_I	0.570	0.43
37_A	288_L	0.570	0.43
106_V	125_L	0.570	0.43
373_E	424_A	0.569	0.43
144_S	235_A	0.569	0.43
377_G	380_L	0.567	0.42
99_A	103_S	0.567	0.42
22_F	166_V	0.567	0.42
268_E	272_K	0.567	0.42
157_I	160_T	0.566	0.42
238_A	412_Y	0.566	0.42
175_G	237_I	0.566	0.42
141_L	323_V	0.565	0.42
19_A	51_T	0.564	0.42
86_F	207_V	0.564	0.42
52_G	65_F	0.564	0.42
90_L	322_A	0.564	0.42
73_S	350_T	0.563	0.42
15_L	162_I	0.563	0.42
92_L	328_F	0.563	0.42
61_T	64_V	0.563	0.42
99_A	204_V	0.562	0.42
289_M	292_V	0.559	0.41
16_M	91_Y	0.558	0.41
111_G	114_P	0.558	0.41
275_S	280_S	0.557	0.41
240_V	244_V	0.557	0.41
20_L	204_V	0.556	0.41
112_V	299_V	0.556	0.41
121_S	234_A	0.555	0.41
207_V	355_A	0.554	0.41
292_V	419_L	0.552	0.41
53_V	242_L	0.552	0.41
293_A	299_V	0.551	0.41
182_K	420_I	0.550	0.41
94_I	111_G	0.550	0.41
190_F	194_Q	0.550	0.41
397_K	400_V	0.549	0.40
63_F	67_G	0.548	0.40
131_L	384_I	0.548	0.40
252_M	263_L	0.548	0.40
133_F	238_A	0.548	0.40
213_V	235_A	0.548	0.40
419_L	423_I	0.546	0.40
22_F	33_L	0.546	0.40
328_F	331_L	0.546	0.40
66_S	154_L	0.546	0.40
231_C	235_A	0.545	0.40
320_K	384_I	0.544	0.40
104_G	298_S	0.544	0.40
215_A	310_H	0.543	0.40
424_A	428_C	0.543	0.40
323_V	432_L	0.543	0.40
143_P	303_T	0.543	0.40
385_I	405_F	0.543	0.40
64_V	213_V	0.541	0.40
171_I	403_R	0.541	0.40
149_I	153_F	0.540	0.39
52_G	93_A	0.539	0.39
365_H	371_K	0.539	0.39
15_L	198_L	0.538	0.39
306_S	423_I	0.534	0.39
22_F	340_L	0.532	0.39
103_S	344_S	0.532	0.39
173_P	220_G	0.532	0.39
97_F	328_F	0.532	0.39
141_L	319_K	0.530	0.38
47_G	56_P	0.529	0.38
52_G	290_I	0.528	0.38
134_A	364_L	0.528	0.38
271_A	283_S	0.528	0.38
422_A	429_G	0.527	0.38
362_T	421_P	0.527	0.38
337_L	341_I	0.525	0.38
91_Y	210_I	0.523	0.38
409_L	422_A	0.523	0.38
135_L	400_V	0.523	0.38
411_M	420_I	0.522	0.38
104_G	107_S	0.522	0.38
407_Q	432_L	0.522	0.38
54_G	351_M	0.521	0.37
89_I	146_I	0.520	0.37
222_S	431_I	0.520	0.37
165_L	341_I	0.519	0.37
59_A	204_V	0.518	0.37
134_A	328_F	0.518	0.37
187_Q	330_T	0.518	0.37
52_G	97_F	0.517	0.37
216_L	290_I	0.517	0.37
77_R	375_Y	0.516	0.37
80_P	85_V	0.516	0.37
35_Q	262_I	0.515	0.37
67_G	255_S	0.514	0.37
357_S	412_Y	0.512	0.37
134_A	403_R	0.510	0.36
132_F	298_S	0.510	0.36
13_I	17_L	0.510	0.36
403_R	434_I	0.509	0.36
326_S	338_T	0.509	0.36
36_L	104_G	0.509	0.36
86_F	206_F	0.508	0.36
23_G	30_P	0.507	0.36
367_V	427_I	0.506	0.36
252_M	285_L	0.504	0.36
50_V	85_V	0.503	0.36
324_V	360_F	0.503	0.36
128_F	134_A	0.502	0.36
86_F	91_Y	0.501	0.35
428_C	432_L	0.501	0.35
19_A	304_A	0.501	0.35
386_S	398_I	0.501	0.35
204_V	245_M	0.501	0.35
10_I	189_F	0.500	0.35

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3giaA	1	0.9273	100	0.801	Contact Map
3l1lA	2	0.8773	99.3	0.905	Contact Map
3dh4A	3	0.8886	98.7	0.926	Contact Map
2xq2A	2	0.8932	98.5	0.928	Contact Map
4djkA	2	0.8818	98.4	0.932	Contact Map
2a65A	2	0.9432	97.7	0.943	Contact Map
2jlnA	1	0.8841	97.3	0.947	Contact Map
4us3A	1	0.9	97.3	0.947	Contact Map
4xp4A	1	0.9409	97.1	0.949	Contact Map
4wgvA	2	0.8091	96.4	0.953	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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