YNBB - BACSU - GREMLIN Contacts

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YNBB - Uncharacterized protein YnbB

UniProt:	P94479	Sequences: MFDTLTHGELLKKTAMEVEADIAGIHKQIEEISERNEWRVLQSYRKHKVSDTHFTPSTGYGYDDIGRDTLESIYADVFGGEAGLVRPQIISGTHAISIALFGVLRPGDELLYITGKPYDTLEEIVGVRGGENAGSLKDFQIGYNAVDLTKDGKIDYDAVAAAINPKTKVIGIQRSKGYANRPSFLISEIKEMIRFVKEINENLIVFVDNCYGEFVEELEPCHVGADLMAGSLIKNPGGGLAKTGGYLVGKAKWIEACSYRMTSPGIGREAGASLYSLQEMYQGFFLAPHVVSQSLKGAVFTARFLEKLGFTSNPKWDAKRTDLIQSVEFSDREKMIAFCQAIQFASPINAHVTPYPAYMPGYEDDVIMAAGTFIQGASIELSADGPIRPPYVAYVQGGLTYSHVKNAICSAVDSLMQKQLI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	421 (406)
Sequences:	895 (503)
Seq/√Len:	25.0

BACSU - YNBB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
46_K	76_D	4.896	1.00
358_Y	365_D	4.238	1.00
79_G	222_H	4.169	1.00
297_G	404_V	4.083	1.00
82_A	268_R	3.743	1.00
39_R	222_H	3.735	1.00
19_E	401_Y	3.628	1.00
17_E	307_K	3.536	1.00
80_G	221_C	3.409	1.00
110_L	169_V	3.290	1.00
154_I	159_V	3.198	1.00
193_I	225_A	3.117	1.00
47_H	76_D	3.112	1.00
250_K	253_W	3.069	1.00
197_K	205_V	3.025	1.00
109_E	167_T	2.993	1.00
33_S	292_S	2.945	1.00
311_T	328_E	2.893	1.00
49_V	69_T	2.859	1.00
89_I	98_I	2.750	0.99
186_I	190_K	2.708	0.99
228_M	248_V	2.635	0.99
70_L	281_Y	2.623	0.99
103_V	227_L	2.518	0.99
190_K	194_R	2.504	0.99
49_V	73_I	2.445	0.99
29_I	299_V	2.443	0.99
190_K	218_L	2.438	0.99
77_V	284_F	2.416	0.98
21_D	303_R	2.393	0.98
200_N	203_L	2.307	0.98
123_E	128_R	2.263	0.98
331_D	334_K	2.223	0.97
23_A	27_K	2.215	0.97
341_A	407_A	2.213	0.97
183_S	321_T	2.191	0.97
336_I	367_I	2.152	0.97
144_N	162_A	2.132	0.96
122_E	128_R	2.091	0.96
158_A	162_A	2.077	0.96
42_Q	46_K	2.074	0.96
289_H	293_Q	2.027	0.95
47_H	72_S	2.018	0.95
53_H	69_T	2.008	0.95
49_V	348_I	2.005	0.95
21_D	307_K	1.981	0.95
154_I	192_M	1.976	0.95
156_Y	195_F	1.965	0.94
214_F	236_P	1.956	0.94
112_Y	171_G	1.951	0.94
332_R	365_D	1.951	0.94
116_K	122_E	1.938	0.94
109_E	144_N	1.937	0.94
153_K	188_E	1.923	0.94
172_I	189_I	1.920	0.94
254_I	257_C	1.920	0.94
335_M	385_G	1.919	0.94
105_R	139_F	1.896	0.93
329_F	393_A	1.844	0.92
116_K	145_A	1.844	0.92
49_V	281_Y	1.844	0.92
163_I	200_N	1.834	0.92
15_A	409_C	1.829	0.92
35_R	217_E	1.800	0.91
29_I	292_S	1.750	0.90
25_I	28_Q	1.748	0.90
71_E	89_I	1.743	0.90
239_G	399_L	1.741	0.90
301_T	395_V	1.711	0.89
79_G	221_C	1.695	0.88
300_F	408_I	1.695	0.88
20_A	23_A	1.658	0.87
114_T	154_I	1.657	0.87
74_Y	78_F	1.641	0.87
70_L	280_M	1.635	0.87
306_E	316_W	1.621	0.86
30_E	296_K	1.620	0.86
186_I	218_L	1.606	0.86
247_L	257_C	1.592	0.85
15_A	300_F	1.589	0.85
99_A	227_L	1.587	0.85
105_R	134_G	1.585	0.85
186_I	223_V	1.581	0.85
91_S	263_S	1.571	0.84
82_A	251_A	1.558	0.84
305_L	411_A	1.550	0.83
22_I	26_H	1.531	0.83
163_I	167_T	1.524	0.82
103_V	169_V	1.521	0.82
277_L	280_M	1.519	0.82
32_I	295_L	1.513	0.82
96_I	206_F	1.503	0.81
33_S	402_S	1.497	0.81
155_D	158_A	1.486	0.81
207_V	225_A	1.486	0.81
332_R	387_I	1.486	0.81
364_D	388_R	1.473	0.80
242_K	279_E	1.456	0.79
158_A	161_A	1.456	0.79
83_G	248_V	1.455	0.79
34_E	402_S	1.448	0.79
109_E	142_G	1.436	0.78
33_S	293_Q	1.431	0.78
103_V	256_A	1.430	0.78
68_D	273_S	1.427	0.78
335_M	393_A	1.425	0.78
247_L	254_I	1.417	0.77
206_F	229_A	1.416	0.77
169_V	204_I	1.401	0.77
47_H	73_I	1.398	0.76
339_C	393_A	1.396	0.76
62_Y	378_S	1.393	0.76
186_I	216_E	1.393	0.76
195_F	199_I	1.389	0.76
336_I	356_P	1.385	0.76
218_L	223_V	1.372	0.75
195_F	198_E	1.369	0.75
106_P	139_F	1.330	0.73
16_M	31_E	1.326	0.72
18_V	307_K	1.317	0.72
180_N	392_V	1.308	0.71
184_F	192_M	1.307	0.71
215_V	295_L	1.303	0.71
114_T	192_M	1.297	0.71
30_E	292_S	1.289	0.70
109_E	164_N	1.284	0.70
113_I	192_M	1.283	0.70
379_I	382_S	1.279	0.70
216_E	321_T	1.274	0.69
324_I	383_A	1.271	0.69
370_A	378_S	1.264	0.69
113_I	159_V	1.257	0.68
160_A	199_I	1.256	0.68
82_A	254_I	1.251	0.68
109_E	163_I	1.243	0.67
104_L	110_L	1.242	0.67
68_D	281_Y	1.239	0.67
73_I	281_Y	1.234	0.67
41_L	406_N	1.234	0.67
306_E	315_K	1.223	0.66
344_F	414_S	1.222	0.66
221_C	228_M	1.220	0.66
285_F	347_P	1.218	0.66
242_K	276_S	1.214	0.66
149_T	158_A	1.193	0.64
293_Q	400_T	1.193	0.64
15_A	304_F	1.189	0.64
310_F	334_K	1.187	0.64
290_V	379_I	1.182	0.63
101_F	105_R	1.150	0.61
48_K	351_H	1.145	0.61
197_K	203_L	1.105	0.58
99_A	103_V	1.105	0.58
336_I	387_I	1.103	0.58
131_E	137_K	1.100	0.58
189_I	212_G	1.097	0.58
225_A	228_M	1.097	0.58
218_L	222_H	1.095	0.57
123_E	132_N	1.093	0.57
251_A	255_E	1.092	0.57
91_S	270_A	1.087	0.57
134_G	138_D	1.083	0.57
289_H	402_S	1.079	0.56
164_N	167_T	1.077	0.56
87_P	403_H	1.077	0.56
329_F	334_K	1.070	0.56
105_R	256_A	1.065	0.55
194_R	198_E	1.064	0.55
80_G	222_H	1.064	0.55
187_S	216_E	1.060	0.55
293_Q	402_S	1.049	0.54
273_S	277_L	1.047	0.54
332_R	391_Y	1.044	0.54
105_R	138_D	1.044	0.54
308_L	412_V	1.043	0.54
180_N	328_E	1.041	0.54
78_F	248_V	1.040	0.53
13_K	17_E	1.036	0.53
90_I	270_A	1.036	0.53
37_E	403_H	1.034	0.53
184_F	188_E	1.033	0.53
51_D	375_Q	1.032	0.53
346_S	372_T	1.026	0.52
163_I	203_L	1.012	0.51
357_A	365_D	1.010	0.51
187_S	218_L	1.008	0.51
97_S	101_F	1.008	0.51
282_Q	374_I	1.002	0.51
71_E	84_L	1.001	0.51
311_T	315_K	0.999	0.51
31_E	217_E	0.990	0.50
89_I	95_A	0.986	0.50
68_D	72_S	0.975	0.49
176_K	183_S	0.973	0.49
28_Q	319_K	0.972	0.49
269_E	370_A	0.972	0.49
84_L	258_S	0.967	0.48
69_T	72_S	0.962	0.48
335_M	387_I	0.959	0.48
191_E	195_F	0.955	0.47
45_R	345_A	0.954	0.47
192_M	196_V	0.953	0.47
300_F	304_F	0.950	0.47
111_L	163_I	0.943	0.46
102_G	257_C	0.938	0.46
277_L	281_Y	0.936	0.46
113_I	170_I	0.933	0.46
167_T	200_N	0.933	0.46
133_A	256_A	0.932	0.46
153_K	254_I	0.928	0.45
141_I	199_I	0.928	0.45
266_I	270_A	0.927	0.45
129_G	137_K	0.927	0.45
345_A	407_A	0.925	0.45
303_R	316_W	0.925	0.45
341_A	345_A	0.924	0.45
109_E	166_K	0.923	0.45
156_Y	192_M	0.920	0.45
123_E	129_G	0.918	0.45
320_R	325_Q	0.911	0.44
87_P	277_L	0.910	0.44
41_L	364_D	0.909	0.44
69_T	281_Y	0.903	0.44
192_M	205_V	0.902	0.44
298_A	325_Q	0.899	0.43
146_V	158_A	0.898	0.43
160_A	198_E	0.898	0.43
45_R	410_S	0.890	0.43
99_A	257_C	0.887	0.42
206_F	321_T	0.884	0.42
242_K	280_M	0.884	0.42
160_A	195_F	0.882	0.42
156_Y	191_E	0.881	0.42
71_E	98_I	0.876	0.42
285_F	403_H	0.874	0.42
410_S	413_D	0.874	0.42
204_I	247_L	0.872	0.41
301_T	305_L	0.869	0.41
71_E	272_A	0.868	0.41
139_F	260_R	0.865	0.41
52_T	351_H	0.862	0.41
114_T	205_V	0.862	0.41
98_I	261_M	0.860	0.41
39_R	43_S	0.858	0.40
90_I	262_T	0.858	0.40
226_D	250_K	0.854	0.40
166_K	200_N	0.853	0.40
330_S	389_P	0.852	0.40
105_R	260_R	0.847	0.40
78_F	236_P	0.847	0.40
44_Y	49_V	0.846	0.40
31_E	35_R	0.845	0.40
336_I	340_Q	0.843	0.39
159_V	192_M	0.841	0.39
306_E	317_D	0.841	0.39
121_L	236_P	0.838	0.39
152_G	182_P	0.835	0.39
99_A	247_L	0.832	0.39
45_R	350_A	0.831	0.39
149_T	152_G	0.828	0.38
70_L	277_L	0.825	0.38
101_F	134_G	0.824	0.38
269_E	378_S	0.818	0.38
305_L	327_V	0.818	0.38
342_I	370_A	0.818	0.38
169_V	203_L	0.817	0.38
263_S	266_I	0.815	0.37
375_Q	378_S	0.813	0.37
168_K	367_I	0.813	0.37
157_D	160_A	0.813	0.37
19_E	405_K	0.812	0.37
349_N	352_V	0.811	0.37
340_Q	353_T	0.810	0.37
22_I	303_R	0.809	0.37
300_F	409_C	0.800	0.36
139_F	256_A	0.798	0.36
116_K	143_Y	0.795	0.36
243_T	274_L	0.794	0.36
32_I	36_N	0.793	0.36
103_V	139_F	0.793	0.36
27_K	348_I	0.792	0.36
113_I	172_I	0.787	0.36
103_V	250_K	0.784	0.35
108_D	168_K	0.784	0.35
56_P	277_L	0.781	0.35
18_V	22_I	0.780	0.35
339_C	347_P	0.777	0.35
172_I	193_I	0.776	0.35
103_V	257_C	0.776	0.35
340_Q	355_Y	0.776	0.35
54_F	280_M	0.772	0.35
36_N	39_R	0.771	0.35
366_V	387_I	0.768	0.34
56_P	275_Y	0.767	0.34
54_F	275_Y	0.767	0.34
56_P	272_A	0.767	0.34
337_A	340_Q	0.764	0.34
111_L	164_N	0.764	0.34
38_W	42_Q	0.759	0.34
138_D	225_A	0.757	0.34
29_I	295_L	0.755	0.33
14_T	18_V	0.755	0.33
142_G	167_T	0.752	0.33
83_G	221_C	0.751	0.33
359_M	368_M	0.748	0.33
187_S	201_E	0.748	0.33
128_R	363_E	0.748	0.33
102_G	105_R	0.748	0.33
123_E	127_V	0.747	0.33
88_Q	272_A	0.745	0.33
18_V	21_D	0.744	0.33
185_L	321_T	0.741	0.33
274_L	277_L	0.741	0.33
87_P	273_S	0.739	0.32
261_M	284_F	0.738	0.32
327_V	395_V	0.737	0.32
229_A	293_Q	0.737	0.32
176_K	313_N	0.736	0.32
282_Q	286_L	0.736	0.32
102_G	106_P	0.736	0.32
98_I	257_C	0.736	0.32
240_L	335_M	0.735	0.32
331_D	392_V	0.735	0.32
227_L	257_C	0.735	0.32
286_L	400_T	0.735	0.32
365_D	391_Y	0.734	0.32
370_A	400_T	0.732	0.32
372_T	377_A	0.731	0.32
110_L	171_G	0.727	0.32
14_T	304_F	0.727	0.32
72_S	76_D	0.726	0.32
310_F	341_A	0.726	0.32
304_F	412_V	0.725	0.32
125_V	145_A	0.723	0.31
129_G	132_N	0.723	0.31
58_T	254_I	0.721	0.31
91_S	266_I	0.721	0.31
53_H	238_G	0.720	0.31
206_F	227_L	0.719	0.31
341_A	411_A	0.719	0.31
363_E	388_R	0.718	0.31
204_I	250_K	0.718	0.31
109_E	162_A	0.718	0.31
194_R	218_L	0.717	0.31
338_F	395_V	0.716	0.31
300_F	411_A	0.713	0.31
93_T	219_E	0.713	0.31
335_M	357_A	0.712	0.31
53_H	102_G	0.712	0.31
18_V	300_F	0.711	0.31
28_Q	332_R	0.710	0.31
328_E	392_V	0.706	0.30
52_T	65_I	0.705	0.30
254_I	268_R	0.704	0.30
169_V	229_A	0.704	0.30
71_E	268_R	0.702	0.30
17_E	20_A	0.700	0.30
88_Q	372_T	0.699	0.30
89_I	182_P	0.697	0.30
214_F	403_H	0.697	0.30
144_N	164_N	0.696	0.30
97_S	257_C	0.694	0.30
54_F	348_I	0.694	0.30
311_T	330_S	0.692	0.30
93_T	263_S	0.692	0.30
170_I	203_L	0.691	0.29
21_D	316_W	0.691	0.29
356_P	363_E	0.688	0.29
97_S	263_S	0.686	0.29
142_G	166_K	0.686	0.29
205_V	250_K	0.686	0.29
69_T	238_G	0.685	0.29
160_A	165_P	0.684	0.29
227_L	253_W	0.677	0.29
86_R	265_G	0.677	0.29
286_L	290_V	0.677	0.29
172_I	192_M	0.676	0.29
233_I	378_S	0.675	0.29
22_I	299_V	0.670	0.28
43_S	76_D	0.668	0.28
168_K	311_T	0.668	0.28
106_P	260_R	0.667	0.28
102_G	254_I	0.666	0.28
182_P	313_N	0.665	0.28
134_G	260_R	0.665	0.28
156_Y	199_I	0.664	0.28
324_I	370_A	0.664	0.28
272_A	277_L	0.663	0.28
113_I	205_V	0.663	0.28
204_I	253_W	0.662	0.28
179_A	305_L	0.659	0.28
74_Y	248_V	0.654	0.27
55_T	273_S	0.654	0.27
30_E	394_Y	0.649	0.27
165_P	200_N	0.649	0.27
136_L	141_I	0.646	0.27
252_K	256_A	0.645	0.27
87_P	276_S	0.645	0.27
180_N	385_G	0.643	0.27
53_H	106_P	0.643	0.27
157_D	190_K	0.643	0.27
37_E	400_T	0.643	0.27
170_I	196_V	0.641	0.27
378_S	400_T	0.641	0.27
385_G	407_A	0.640	0.26
29_I	32_I	0.638	0.26
328_E	385_G	0.638	0.26
149_T	155_D	0.638	0.26
196_V	205_V	0.637	0.26
11_L	18_V	0.637	0.26
129_G	394_Y	0.636	0.26
182_P	318_A	0.634	0.26
167_T	203_L	0.633	0.26
276_S	279_E	0.631	0.26
123_E	385_G	0.631	0.26
53_H	73_I	0.629	0.26
74_Y	240_L	0.627	0.26
323_L	404_V	0.627	0.26
27_K	141_I	0.624	0.26
194_R	377_A	0.623	0.26
305_L	412_V	0.621	0.25
98_I	374_I	0.619	0.25
11_L	409_C	0.619	0.25
102_G	134_G	0.617	0.25
28_Q	31_E	0.617	0.25
323_L	335_M	0.617	0.25
89_I	128_R	0.616	0.25
372_T	407_A	0.614	0.25
88_Q	310_F	0.611	0.25
385_G	389_P	0.611	0.25
42_Q	45_R	0.611	0.25
313_N	318_A	0.609	0.25
72_S	247_L	0.609	0.25
176_K	395_V	0.608	0.25
17_E	194_R	0.608	0.25
97_S	264_P	0.607	0.25
75_A	83_G	0.605	0.25
342_I	407_A	0.604	0.25
303_R	307_K	0.604	0.25
39_R	341_A	0.603	0.24
54_F	272_A	0.603	0.24
323_L	395_V	0.602	0.24
99_A	171_G	0.600	0.24
193_I	203_L	0.600	0.24
62_Y	360_P	0.599	0.24
215_V	291_V	0.599	0.24
114_T	159_V	0.598	0.24
78_F	214_F	0.598	0.24
146_V	162_A	0.597	0.24
79_G	340_Q	0.596	0.24
149_T	153_K	0.596	0.24
273_S	312_S	0.596	0.24
74_Y	163_I	0.596	0.24
132_N	135_S	0.595	0.24
176_K	321_T	0.595	0.24
73_I	348_I	0.594	0.24
240_L	243_T	0.593	0.24
112_Y	351_H	0.592	0.24
30_E	293_Q	0.591	0.24
370_A	381_L	0.590	0.24
18_V	303_R	0.590	0.24
150_K	342_I	0.588	0.24
292_S	402_S	0.588	0.24
276_S	280_M	0.586	0.24
365_D	387_I	0.585	0.24
149_T	227_L	0.585	0.24
168_K	256_A	0.583	0.23
68_D	97_S	0.582	0.23
298_A	301_T	0.581	0.23
239_G	400_T	0.581	0.23
197_K	201_E	0.581	0.23
270_A	357_A	0.580	0.23
34_E	407_A	0.580	0.23
62_Y	367_I	0.579	0.23
215_V	273_S	0.578	0.23
112_Y	169_V	0.577	0.23
141_I	165_P	0.577	0.23
112_Y	192_M	0.576	0.23
32_I	269_E	0.575	0.23
96_I	374_I	0.575	0.23
165_P	228_M	0.573	0.23
32_I	217_E	0.573	0.23
125_V	143_Y	0.573	0.23
253_W	257_C	0.573	0.23
282_Q	403_H	0.571	0.23
411_A	415_L	0.570	0.23
176_K	274_L	0.569	0.23
196_V	199_I	0.568	0.23
14_T	137_K	0.568	0.23
53_H	372_T	0.567	0.23
82_A	255_E	0.567	0.23
17_E	21_D	0.566	0.23
146_V	195_F	0.566	0.23
172_I	223_V	0.566	0.23
171_G	205_V	0.564	0.22
187_S	191_E	0.564	0.22
80_G	223_V	0.563	0.22
35_R	350_A	0.561	0.22
46_K	329_F	0.561	0.22
262_T	270_A	0.560	0.22
171_G	192_M	0.559	0.22
101_F	106_P	0.558	0.22
188_E	191_E	0.558	0.22
291_V	375_Q	0.557	0.22
266_I	366_V	0.557	0.22
236_P	354_P	0.556	0.22
70_L	272_A	0.556	0.22
54_F	196_V	0.555	0.22
240_L	374_I	0.555	0.22
364_D	375_Q	0.555	0.22
52_T	147_D	0.554	0.22
233_I	360_P	0.552	0.22
245_G	374_I	0.550	0.22
357_A	378_S	0.550	0.22
39_R	349_N	0.549	0.22
37_E	297_G	0.547	0.22
174_R	186_I	0.546	0.22
34_E	38_W	0.546	0.22
289_H	399_L	0.546	0.22
106_P	141_I	0.546	0.22
77_V	186_I	0.546	0.22
89_I	245_G	0.545	0.21
102_G	139_F	0.545	0.21
125_V	336_I	0.544	0.21
51_D	349_N	0.543	0.21
69_T	193_I	0.542	0.21
187_S	190_K	0.542	0.21
278_Q	374_I	0.542	0.21
80_G	254_I	0.542	0.21
34_E	405_K	0.541	0.21
349_N	359_M	0.541	0.21
37_E	404_V	0.540	0.21
27_K	198_E	0.539	0.21
297_G	403_H	0.538	0.21
37_E	405_K	0.538	0.21
133_A	255_E	0.537	0.21
180_N	313_N	0.537	0.21
183_S	325_Q	0.536	0.21
102_G	261_M	0.536	0.21
56_P	293_Q	0.536	0.21
359_M	370_A	0.535	0.21
372_T	379_I	0.535	0.21
370_A	383_A	0.534	0.21
258_S	268_R	0.534	0.21
228_M	284_F	0.534	0.21
103_V	204_I	0.533	0.21
63_D	258_S	0.532	0.21
103_V	253_W	0.531	0.21
96_I	159_V	0.530	0.21
138_D	256_A	0.529	0.21
323_L	379_I	0.529	0.21
297_G	327_V	0.528	0.21
87_P	98_I	0.528	0.21
331_D	365_D	0.527	0.21
41_L	347_P	0.527	0.21
39_R	197_K	0.527	0.21
17_E	35_R	0.526	0.21
111_L	146_V	0.525	0.21
349_N	395_V	0.525	0.21
63_D	349_N	0.525	0.21
17_E	365_D	0.524	0.20
123_E	135_S	0.524	0.20
346_S	407_A	0.523	0.20
190_K	250_K	0.523	0.20
12_K	15_A	0.523	0.20
20_A	24_G	0.523	0.20
233_I	238_G	0.523	0.20
368_M	404_V	0.522	0.20
11_L	407_A	0.521	0.20
295_L	299_V	0.520	0.20
241_A	324_I	0.520	0.20
96_I	321_T	0.519	0.20
46_K	150_K	0.519	0.20
190_K	223_V	0.518	0.20
261_M	268_R	0.517	0.20
214_F	342_I	0.517	0.20
330_S	334_K	0.517	0.20
101_F	260_R	0.516	0.20
122_E	241_A	0.515	0.20
221_C	355_Y	0.515	0.20
18_V	308_L	0.512	0.20
16_M	20_A	0.511	0.20
17_E	251_A	0.509	0.20
171_G	206_F	0.509	0.20
14_T	412_V	0.508	0.20
11_L	300_F	0.508	0.20
282_Q	394_Y	0.508	0.20
25_I	299_V	0.508	0.20
56_P	270_A	0.507	0.20
307_K	385_G	0.507	0.20
275_Y	279_E	0.507	0.20
95_A	339_C	0.506	0.20
377_A	382_S	0.506	0.20
16_M	24_G	0.506	0.20
193_I	197_K	0.506	0.20
400_T	403_H	0.504	0.20
54_F	276_S	0.504	0.20
122_E	364_D	0.503	0.20
253_W	256_A	0.503	0.20
134_G	139_F	0.503	0.20
239_G	379_I	0.503	0.20
35_R	405_K	0.503	0.20
146_V	186_I	0.502	0.19
282_Q	297_G	0.502	0.19
297_G	323_L	0.502	0.19
312_S	321_T	0.502	0.19
403_H	412_V	0.502	0.19
218_L	221_C	0.501	0.19
227_L	247_L	0.500	0.19

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ht4A	4	0.9881	100	0.58	Contact Map
3i16A	4	0.9881	100	0.589	Contact Map
3jzlA	4	0.962	100	0.594	Contact Map
3hvyA	4	0.981	100	0.616	Contact Map
3aczA	4	0.8527	99.8	0.91	Contact Map
1pffA	3	0.7197	99.7	0.912	Contact Map
3wcoA	2	0.7316	99.7	0.913	Contact Map
3wcnA	2	0.7482	99.7	0.914	Contact Map
1jg8A	4	0.7696	99.7	0.914	Contact Map
3qhxA	4	0.8195	99.7	0.914	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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