HFLX - BACSU - GREMLIN Contacts

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HFLX - GTPase HflX

UniProt:	P94478	Sequences: MNEQETIQEKAILVGCQLPHITDEHFENSMEELASLTKTADGKVLTSVTQKRNRADAATYIGKGKVEELKALVEELEADLLIFNDELSPSQLKSLATAIEVKMIDRTQLILDIFAKRARTREGKLQIELAQLQYALPRLTGQGINLSRQGGGIGARGPGETKLETDRRHIRNRIHEINTQLSTVIRHRSRYRERRKKNGVLQIALVGYTNAGKSTWFNRLTSADSYEEDLLFATLDPMTRKMVLPSGYSVLLSDTVGFIQDLPTTLIAAFRSTLEEVKEADLILHLIDSSNEDYAGHEKTVLRLLEELEADDIPMLTAYNKRDQKLPDFIPTAGRDHIMVSAKFEDDAAAFKEAIQRYLRQELLTSFEAHVPASEGKLLSRIKSETMVDRFYFNEENEQYDISGYVQEEQSIIGELKKYM	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	420 (394)
Sequences:	3536 (2059)
Seq/√Len:	103.7

ECOLI - HFLX
BACSU - HFLX
HALSA - Q9HMC2
SULSO - HFLX

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
66_V	98_A	3.869	1.00
37_T	82_I	3.602	1.00
61_I	69_L	3.551	1.00
73_V	101_V	3.525	1.00
133_Q	178_N	3.507	1.00
284_L	318_A	3.332	1.00
66_V	95_L	2.981	1.00
204_A	280_A	2.902	1.00
52_R	56_D	2.900	1.00
34_A	47_S	2.867	1.00
239_T	251_L	2.727	1.00
31_E	47_S	2.688	1.00
287_I	317_T	2.669	1.00
241_K	249_S	2.654	1.00
65_K	68_E	2.609	1.00
35_S	38_K	2.569	1.00
246_S	356_Q	2.561	1.00
81_L	99_I	2.434	1.00
48_V	69_L	2.412	1.00
73_V	81_L	2.363	1.00
354_A	357_R	2.339	1.00
368_E	401_D	2.336	1.00
128_E	173_R	2.282	1.00
70_K	74_E	2.238	1.00
37_T	42_G	2.236	1.00
85_D	261_D	2.228	1.00
46_T	72_L	2.221	1.00
203_I	250_V	2.191	1.00
302_L	315_M	2.183	1.00
219_R	348_A	2.173	1.00
366_S	401_D	2.154	1.00
48_V	72_L	2.148	1.00
125_L	177_I	2.092	1.00
239_T	253_S	2.092	1.00
17_Q	51_K	2.089	1.00
12_I	78_A	2.056	1.00
39_T	117_R	2.055	1.00
215_T	342_A	2.043	1.00
394_N	399_Q	2.033	1.00
368_E	399_Q	2.025	1.00
318_A	351_F	2.006	1.00
95_L	99_I	2.000	1.00
268_A	271_R	1.943	1.00
291_N	297_H	1.942	1.00
14_V	83_F	1.916	1.00
316_L	354_A	1.911	1.00
14_V	61_I	1.885	1.00
306_E	311_D	1.884	1.00
354_A	358_Y	1.877	1.00
390_R	401_D	1.865	1.00
298_E	317_T	1.837	1.00
381_R	385_E	1.812	1.00
165_T	169_H	1.759	1.00
11_A	42_G	1.752	1.00
366_S	403_S	1.749	1.00
182_S	185_I	1.732	1.00
284_L	351_F	1.731	1.00
322_R	339_M	1.728	1.00
226_Y	230_L	1.724	1.00
206_V	283_I	1.721	1.00
112_D	131_Q	1.707	1.00
81_L	101_V	1.702	1.00
264_T	304_L	1.698	1.00
185_I	275_E	1.691	1.00
70_K	98_A	1.678	1.00
318_A	338_I	1.668	1.00
299_K	303_R	1.667	1.00
185_I	271_R	1.658	1.00
282_L	355_I	1.653	1.00
289_S	319_Y	1.651	1.00
143_G	147_S	1.621	1.00
293_D	296_G	1.616	1.00
122_E	188_R	1.609	1.00
8_Q	43_K	1.598	1.00
39_T	230_L	1.596	1.00
143_G	146_L	1.587	1.00
61_I	83_F	1.578	1.00
383_K	391_F	1.573	1.00
176_E	180_Q	1.571	1.00
370_H	399_Q	1.571	1.00
143_G	162_K	1.564	1.00
196_K	279_E	1.562	1.00
188_R	275_E	1.562	1.00
150_G	155_A	1.556	1.00
370_H	397_N	1.554	1.00
287_I	298_E	1.549	1.00
11_A	80_L	1.549	1.00
214_S	225_S	1.545	1.00
218_N	227_E	1.526	1.00
278_K	309_E	1.503	1.00
290_S	324_Q	1.493	1.00
219_R	345_E	1.491	1.00
73_V	99_I	1.482	1.00
303_R	307_E	1.477	1.00
225_S	238_M	1.475	1.00
12_I	72_L	1.464	1.00
121_R	180_Q	1.453	1.00
145_N	162_K	1.450	1.00
330_I	334_G	1.449	1.00
67_E	71_A	1.443	1.00
128_E	132_L	1.439	1.00
379_L	391_F	1.426	1.00
174_I	178_N	1.422	1.00
60_Y	85_D	1.420	1.00
316_L	358_Y	1.412	1.00
285_H	301_V	1.407	1.00
344_F	347_D	1.394	1.00
56_D	63_K	1.390	1.00
66_V	99_I	1.376	1.00
319_Y	339_M	1.372	1.00
149_Q	155_A	1.366	1.00
26_F	49_T	1.360	0.99
15_G	30_M	1.352	0.99
387_M	403_S	1.349	0.99
215_T	340_V	1.334	0.99
187_H	190_R	1.325	0.99
302_L	317_T	1.319	0.99
185_I	272_S	1.316	0.99
221_T	242_M	1.307	0.99
226_Y	233_A	1.306	0.99
330_I	333_A	1.298	0.99
192_R	275_E	1.291	0.99
175_H	179_T	1.290	0.99
9_E	102_K	1.288	0.99
347_D	350_A	1.285	0.99
129_L	174_I	1.285	0.99
379_L	400_Y	1.284	0.99
353_E	357_R	1.273	0.99
373_A	397_N	1.273	0.99
37_T	109_L	1.269	0.99
298_E	302_L	1.268	0.99
31_E	34_A	1.259	0.99
59_T	66_V	1.257	0.99
143_G	150_G	1.254	0.99
382_I	400_Y	1.251	0.99
242_M	252_L	1.251	0.99
67_E	98_A	1.242	0.99
72_L	76_L	1.240	0.99
125_L	184_V	1.240	0.99
265_T	307_E	1.238	0.99
205_L	217_F	1.234	0.99
45_L	76_L	1.230	0.99
243_V	249_S	1.222	0.99
282_L	316_L	1.216	0.99
326_L	329_F	1.208	0.99
12_I	46_T	1.206	0.99
389_D	403_S	1.202	0.99
10_K	43_K	1.186	0.99
42_G	82_I	1.185	0.99
153_I	158_P	1.184	0.99
39_T	259_I	1.183	0.99
336_D	354_A	1.182	0.99
71_A	74_E	1.173	0.98
203_I	284_L	1.170	0.98
17_Q	23_D	1.170	0.98
372_P	375_E	1.169	0.98
289_S	294_Y	1.168	0.98
33_L	82_I	1.168	0.98
285_H	298_E	1.168	0.98
318_A	340_V	1.151	0.98
133_Q	265_T	1.151	0.98
206_V	305_L	1.151	0.98
294_Y	319_Y	1.148	0.98
42_G	153_I	1.143	0.98
287_I	294_Y	1.142	0.98
73_V	78_A	1.139	0.98
42_G	79_D	1.134	0.98
202_Q	251_L	1.128	0.98
46_T	78_A	1.123	0.98
46_T	76_L	1.118	0.98
141_G	155_A	1.115	0.98
242_M	250_V	1.101	0.98
71_A	75_E	1.099	0.98
291_N	294_Y	1.098	0.98
295_A	299_K	1.097	0.98
244_L	250_V	1.094	0.98
190_R	193_E	1.092	0.98
369_A	402_I	1.091	0.98
136_L	171_R	1.089	0.98
316_L	355_I	1.080	0.97
210_N	229_D	1.069	0.97
296_G	299_K	1.068	0.97
149_Q	162_K	1.067	0.97
203_I	282_L	1.066	0.97
141_G	144_I	1.063	0.97
9_E	42_G	1.060	0.97
142_Q	145_N	1.049	0.97
371_V	378_L	1.046	0.97
39_T	231_L	1.045	0.97
141_G	150_G	1.041	0.97
131_Q	163_L	1.041	0.97
94_S	97_T	1.039	0.97
40_A	112_D	1.037	0.97
55_A	60_Y	1.034	0.97
187_H	191_Y	1.034	0.97
42_G	112_D	1.026	0.96
115_A	158_P	1.026	0.96
185_I	268_A	1.023	0.96
131_Q	158_P	1.021	0.96
115_A	131_Q	1.020	0.96
298_E	319_Y	1.019	0.96
16_C	50_Q	1.019	0.96
15_G	29_S	1.019	0.96
375_E	378_L	1.015	0.96
117_R	226_Y	1.015	0.96
310_A	313_I	1.012	0.96
131_Q	135_A	1.011	0.96
264_T	267_I	1.010	0.96
351_F	355_I	1.005	0.96
45_L	78_A	0.998	0.96
141_G	145_N	0.996	0.96
42_G	80_L	0.994	0.96
373_A	393_F	0.993	0.96
393_F	398_E	0.991	0.96
366_S	389_D	0.990	0.96
61_I	66_V	0.987	0.96
245_P	356_Q	0.985	0.96
285_H	291_N	0.983	0.95
80_L	102_K	0.979	0.95
285_H	315_M	0.978	0.95
147_S	150_G	0.975	0.95
74_E	100_E	0.970	0.95
70_K	100_E	0.969	0.95
149_Q	161_T	0.964	0.95
332_T	335_R	0.964	0.95
112_D	156_R	0.963	0.95
160_E	168_R	0.962	0.95
189_S	196_K	0.958	0.95
345_E	348_A	0.956	0.95
34_A	38_K	0.956	0.95
193_E	197_K	0.950	0.95
37_T	44_V	0.949	0.95
122_E	184_V	0.949	0.95
338_I	354_A	0.946	0.94
72_L	78_A	0.944	0.94
16_C	55_A	0.942	0.94
370_H	394_N	0.942	0.94
11_A	82_I	0.941	0.94
156_R	163_L	0.928	0.94
370_H	373_A	0.926	0.94
133_Q	174_I	0.925	0.94
229_D	324_Q	0.925	0.94
336_D	358_Y	0.922	0.94
141_G	162_K	0.922	0.94
380_S	384_S	0.921	0.94
162_K	169_H	0.914	0.93
13_L	33_L	0.909	0.93
123_G	158_P	0.909	0.93
27_E	31_E	0.908	0.93
14_V	69_L	0.906	0.93
12_I	69_L	0.899	0.93
386_T	404_G	0.897	0.93
371_V	398_E	0.896	0.93
183_T	186_R	0.893	0.93
10_K	77_E	0.892	0.93
290_S	325_K	0.890	0.92
28_N	293_D	0.889	0.92
13_L	34_A	0.889	0.92
179_T	182_S	0.887	0.92
97_T	100_E	0.886	0.92
271_R	307_E	0.876	0.92
84_N	261_D	0.875	0.92
217_F	300_T	0.871	0.92
175_H	178_N	0.865	0.91
317_T	337_H	0.861	0.91
217_F	252_L	0.859	0.91
194_R	197_K	0.857	0.91
277_V	283_I	0.854	0.91
294_Y	298_E	0.852	0.91
145_N	169_H	0.852	0.91
63_K	67_E	0.852	0.91
389_D	401_D	0.851	0.91
29_S	261_D	0.844	0.90
69_L	99_I	0.843	0.90
164_E	168_R	0.842	0.90
27_E	47_S	0.838	0.90
228_E	233_A	0.836	0.90
143_G	169_H	0.833	0.90
206_V	277_V	0.832	0.90
394_N	397_N	0.832	0.90
40_A	131_Q	0.831	0.90
340_V	348_A	0.829	0.89
373_A	394_N	0.827	0.89
186_R	190_R	0.826	0.89
120_T	123_G	0.826	0.89
371_V	375_E	0.825	0.89
39_T	226_Y	0.825	0.89
350_A	353_E	0.824	0.89
86_E	265_T	0.821	0.89
382_I	402_I	0.819	0.89
392_Y	399_Q	0.818	0.89
200_V	251_L	0.818	0.89
132_L	170_I	0.817	0.89
172_N	175_H	0.814	0.89
40_A	115_A	0.814	0.89
205_L	216_W	0.812	0.89
48_V	78_A	0.811	0.88
41_D	116_K	0.809	0.88
170_I	174_I	0.804	0.88
123_G	237_P	0.802	0.88
143_G	158_P	0.796	0.88
70_K	99_I	0.795	0.87
188_R	269_A	0.792	0.87
230_L	233_A	0.791	0.87
220_L	352_K	0.790	0.87
42_G	131_Q	0.788	0.87
160_E	164_E	0.787	0.87
382_I	386_T	0.784	0.87
277_V	280_A	0.783	0.87
39_T	112_D	0.783	0.87
39_T	228_E	0.783	0.87
386_T	402_I	0.783	0.87
248_Y	360_R	0.781	0.87
331_P	334_G	0.778	0.86
102_K	112_D	0.776	0.86
386_T	391_F	0.776	0.86
358_Y	361_Q	0.770	0.86
122_E	269_A	0.770	0.86
214_S	227_E	0.767	0.86
102_K	131_Q	0.766	0.85
30_M	47_S	0.762	0.85
59_T	63_K	0.761	0.85
38_K	44_V	0.761	0.85
327_P	331_P	0.758	0.85
129_L	177_I	0.757	0.85
10_K	45_L	0.755	0.85
140_T	143_G	0.752	0.84
50_Q	65_K	0.751	0.84
181_L	184_V	0.746	0.84
147_S	153_I	0.741	0.84
304_L	308_L	0.739	0.83
245_P	352_K	0.738	0.83
146_L	166_D	0.735	0.83
96_A	152_G	0.733	0.83
172_N	176_E	0.733	0.83
123_G	269_A	0.730	0.83
155_A	165_T	0.729	0.83
82_I	109_L	0.727	0.82
379_L	398_E	0.726	0.82
147_S	156_R	0.724	0.82
13_L	47_S	0.722	0.82
349_A	352_K	0.722	0.82
115_A	156_R	0.720	0.82
147_S	155_A	0.718	0.82
30_M	33_L	0.716	0.81
224_D	228_E	0.715	0.81
35_S	39_T	0.715	0.81
120_T	124_K	0.712	0.81
104_I	109_L	0.712	0.81
92_L	108_Q	0.711	0.81
201_L	359_L	0.710	0.81
329_F	333_A	0.709	0.81
383_K	388_V	0.709	0.81
287_I	319_Y	0.708	0.81
300_T	304_L	0.706	0.80
67_E	70_K	0.706	0.80
35_S	260_Q	0.706	0.80
182_S	186_R	0.703	0.80
147_S	162_K	0.702	0.80
236_D	301_V	0.701	0.80
394_N	398_E	0.699	0.80
242_M	355_I	0.698	0.80
324_Q	343_K	0.693	0.79
70_K	73_V	0.691	0.79
299_K	302_L	0.691	0.79
169_H	172_N	0.690	0.79
139_L	167_R	0.690	0.79
15_G	26_F	0.690	0.79
59_T	98_A	0.688	0.79
34_A	44_V	0.688	0.79
390_R	399_Q	0.685	0.78
203_I	355_I	0.685	0.78
40_A	116_K	0.684	0.78
39_T	205_L	0.681	0.78
210_N	228_E	0.673	0.77
30_M	49_T	0.672	0.77
149_Q	156_R	0.671	0.77
221_T	250_V	0.671	0.77
180_Q	268_A	0.670	0.77
344_F	349_A	0.669	0.77
300_T	303_R	0.668	0.77
349_A	353_E	0.666	0.76
214_S	252_L	0.663	0.76
237_P	252_L	0.662	0.76
289_S	325_K	0.661	0.76
42_G	102_K	0.660	0.76
112_D	115_A	0.657	0.76
96_A	102_K	0.655	0.75
15_G	261_D	0.655	0.75
162_K	166_D	0.654	0.75
154_G	158_P	0.654	0.75
223_A	237_P	0.649	0.75
131_Q	153_I	0.648	0.75
247_G	356_Q	0.648	0.75
40_A	153_I	0.647	0.74
370_H	396_E	0.646	0.74
192_R	276_E	0.646	0.74
369_A	378_L	0.644	0.74
367_F	402_I	0.643	0.74
31_E	324_Q	0.643	0.74
115_A	155_A	0.641	0.74
236_D	266_L	0.638	0.73
123_G	218_N	0.638	0.73
334_G	357_R	0.637	0.73
122_E	275_E	0.636	0.73
373_A	398_E	0.634	0.73
28_N	291_N	0.633	0.73
144_I	150_G	0.631	0.73
43_K	77_E	0.630	0.72
141_G	146_L	0.630	0.72
43_K	47_S	0.629	0.72
17_Q	26_F	0.629	0.72
149_Q	153_I	0.627	0.72
147_S	158_P	0.627	0.72
329_F	334_G	0.627	0.72
163_L	166_D	0.626	0.72
353_E	356_Q	0.625	0.72
77_E	183_T	0.623	0.72
88_S	91_Q	0.623	0.72
144_I	147_S	0.623	0.72
13_L	16_C	0.621	0.71
363_L	403_S	0.621	0.71
178_N	268_A	0.620	0.71
146_L	162_K	0.619	0.71
275_E	279_E	0.618	0.71
141_G	147_S	0.617	0.71
319_Y	337_H	0.617	0.71
131_Q	165_T	0.617	0.71
147_S	169_H	0.616	0.71
280_A	310_A	0.614	0.71
86_E	107_T	0.614	0.71
9_E	131_Q	0.613	0.70
50_Q	62_G	0.612	0.70
60_Y	83_F	0.612	0.70
141_G	166_D	0.610	0.70
248_Y	356_Q	0.610	0.70
248_Y	363_L	0.609	0.70
328_D	331_P	0.608	0.70
23_D	27_E	0.607	0.70
219_R	343_K	0.605	0.69
143_G	148_R	0.605	0.69
376_G	380_S	0.603	0.69
137_P	217_F	0.603	0.69
304_L	307_E	0.603	0.69
112_D	153_I	0.602	0.69
288_D	321_K	0.602	0.69
303_R	306_E	0.600	0.69
383_K	386_T	0.600	0.69
194_R	198_N	0.600	0.69
376_G	398_E	0.598	0.69
388_V	391_F	0.597	0.68
329_F	332_T	0.597	0.68
326_L	331_P	0.596	0.68
87_L	91_Q	0.595	0.68
35_S	268_A	0.594	0.68
29_S	260_Q	0.593	0.68
93_K	96_A	0.592	0.68
62_G	65_K	0.590	0.67
238_M	383_K	0.590	0.67
29_S	35_S	0.589	0.67
391_F	397_N	0.589	0.67
158_P	301_V	0.588	0.67
29_S	33_L	0.587	0.67
379_L	383_K	0.587	0.67
205_L	286_L	0.587	0.67
131_Q	156_R	0.586	0.67
69_L	73_V	0.586	0.67
129_L	301_V	0.585	0.67
302_L	306_E	0.584	0.67
97_T	101_V	0.584	0.67
90_S	93_K	0.583	0.67
287_I	302_L	0.583	0.67
203_I	358_Y	0.580	0.66
191_Y	268_A	0.579	0.66
150_G	191_Y	0.577	0.66
108_Q	137_P	0.576	0.66
286_L	320_N	0.576	0.66
331_P	335_R	0.575	0.66
161_T	165_T	0.573	0.65
26_F	51_K	0.573	0.65
145_N	149_Q	0.572	0.65
222_S	243_V	0.570	0.65
121_R	124_K	0.570	0.65
102_K	190_R	0.569	0.65
389_D	392_Y	0.566	0.64
327_P	335_R	0.566	0.64
87_L	280_A	0.566	0.64
33_L	83_F	0.565	0.64
248_Y	359_L	0.565	0.64
214_S	226_Y	0.564	0.64
29_S	52_R	0.562	0.64
92_L	145_N	0.562	0.64
178_N	182_S	0.562	0.64
111_L	218_N	0.561	0.64
367_F	400_Y	0.560	0.63
334_G	339_M	0.560	0.63
153_I	156_R	0.559	0.63
185_I	189_S	0.558	0.63
217_F	227_E	0.557	0.63
25_H	296_G	0.557	0.63
325_K	329_F	0.556	0.63
227_E	230_L	0.556	0.63
221_T	224_D	0.555	0.63
135_A	142_Q	0.553	0.63
217_F	239_T	0.553	0.63
108_Q	142_Q	0.550	0.62
188_R	201_L	0.550	0.62
175_H	183_T	0.550	0.62
26_F	47_S	0.550	0.62
189_S	361_Q	0.549	0.62
79_D	272_S	0.548	0.62
162_K	218_N	0.547	0.62
104_I	108_Q	0.546	0.62
139_L	163_L	0.545	0.61
12_I	48_V	0.545	0.61
348_A	352_K	0.544	0.61
207_G	257_G	0.543	0.61
15_G	18_L	0.542	0.61
303_R	331_P	0.541	0.61
35_S	229_D	0.541	0.61
9_E	79_D	0.540	0.61
291_N	295_A	0.540	0.61
33_L	44_V	0.539	0.61
144_I	162_K	0.539	0.61
264_T	307_E	0.539	0.61
208_Y	263_P	0.538	0.60
211_A	269_A	0.538	0.60
182_S	357_R	0.538	0.60
298_E	301_V	0.537	0.60
193_E	196_K	0.537	0.60
152_G	160_E	0.536	0.60
309_E	313_I	0.536	0.60
371_V	379_L	0.535	0.60
8_Q	38_K	0.535	0.60
340_V	343_K	0.534	0.60
383_K	393_F	0.534	0.60
143_G	155_A	0.534	0.60
340_V	344_F	0.533	0.60
42_G	155_A	0.533	0.60
48_V	76_L	0.532	0.60
206_V	310_A	0.532	0.60
202_Q	308_L	0.531	0.59
369_A	393_F	0.529	0.59
159_G	168_R	0.529	0.59
392_Y	398_E	0.528	0.59
19_P	53_N	0.527	0.59
121_R	125_L	0.527	0.59
12_I	81_L	0.527	0.59
59_T	94_S	0.526	0.59
216_W	340_V	0.525	0.59
279_E	343_K	0.524	0.58
60_Y	191_Y	0.524	0.58
377_K	398_E	0.522	0.58
148_R	192_R	0.522	0.58
250_V	355_I	0.522	0.58
233_A	266_L	0.522	0.58
16_C	61_I	0.521	0.58
369_A	372_P	0.521	0.58
63_K	98_A	0.521	0.58
25_H	28_N	0.521	0.58
350_A	354_A	0.520	0.58
370_H	374_S	0.520	0.58
62_G	87_L	0.520	0.58
39_T	260_Q	0.519	0.58
25_H	325_K	0.519	0.58
310_A	315_M	0.518	0.58
340_V	346_D	0.517	0.57
188_R	237_P	0.516	0.57
217_F	253_S	0.515	0.57
202_Q	239_T	0.514	0.57
129_L	216_W	0.514	0.57
148_R	275_E	0.512	0.57
70_K	101_V	0.512	0.57
156_R	165_T	0.511	0.57
69_L	116_K	0.511	0.57
149_Q	158_P	0.511	0.57
12_I	73_V	0.510	0.56
144_I	148_R	0.510	0.56
213_K	254_D	0.508	0.56
260_Q	296_G	0.508	0.56
104_I	154_G	0.508	0.56
326_L	330_I	0.507	0.56
12_I	76_L	0.505	0.56
160_E	166_D	0.504	0.56
369_A	400_Y	0.503	0.55
371_V	400_Y	0.503	0.55
381_R	384_S	0.502	0.55
330_I	335_R	0.500	0.55
327_P	330_I	0.500	0.55
295_A	374_S	0.500	0.55
136_L	174_I	0.500	0.55

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2qtfA	1	0.7024	100	0.331	Contact Map
3geeA	2	0.8333	100	0.674	Contact Map
3j65o	1	0.7405	100	0.676	Contact Map
1xzpA	4	0.9286	100	0.686	Contact Map
3gehA	2	0.8905	100	0.693	Contact Map
2e87A	1	0.7952	100	0.737	Contact Map
2qm8A	2	0.5857	100	0.76	Contact Map
4a9aA	1	0.6262	100	0.761	Contact Map
3j4jA	1	0.6429	100	0.764	Contact Map
4kjzA	1	0.6452	100	0.77	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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