GCH4 - BACSU - GREMLIN Contacts

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GCH4 - GTP cyclohydrolase FolE2

UniProt:	P94398	Sequences: MNQHTLLPKKTERLQYFGSVSPIKGEKPVEKEKMKDLQNIRKDYFFDIQHVGVANVSHPVTITSAMMPAEQTTAANFTMTCNLPRNQKGINMSRLTELLQVYHQNGWILSFSSLQQFTKELAENMDTSSATVEVRFPWFFERKSPKLEKAGLMHADIFMSVTYRKDQPFKQRAGISAKVTTLCPCSKEISEYSAHNQRGTVSIWADIHPAASLPSDVKADLLHAAESNASARLHPVLKRPDEKAVTETAYENPRFVEDLARLIAADLFELEWVSAFEIECRNEESIHLHDAYAKLCFSKEVDKI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	304 (255)
Sequences:	1042 (659)
Seq/√Len:	41.3

BACSU - GCH4
HALSA - MPTA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
203_I	225_A	6.167	1.00
254_R	262_L	4.148	1.00
199_G	282_N	3.958	1.00
78_T	133_E	3.469	1.00
228_N	266_D	3.324	1.00
170_K	206_D	3.221	1.00
77_F	134_V	3.005	1.00
141_E	150_A	2.952	1.00
268_F	276_F	2.897	1.00
90_I	95_L	2.892	1.00
205_A	221_L	2.565	1.00
281_R	290_D	2.535	1.00
100_Q	141_E	2.523	1.00
192_Y	251_E	2.452	1.00
176_S	200_T	2.445	1.00
158_F	174_G	2.424	1.00
180_T	249_A	2.411	1.00
151_G	236_V	2.394	1.00
133_E	160_S	2.353	1.00
181_T	259_L	2.346	1.00
164_R	168_P	2.334	1.00
268_F	297_F	2.304	1.00
208_H	274_S	2.278	1.00
143_K	150_A	2.235	1.00
136_F	157_I	2.168	0.99
48_I	295_L	2.159	0.99
142_R	226_E	2.132	0.99
174_G	204_W	2.112	0.99
79_M	121_L	2.065	0.99
55_N	76_N	2.056	0.99
182_L	194_A	1.981	0.99
191_E	251_E	1.955	0.99
90_I	125_M	1.929	0.99
65_A	220_D	1.921	0.99
176_S	202_S	1.898	0.99
82_N	128_S	1.867	0.98
277_E	296_C	1.857	0.98
232_R	248_T	1.848	0.98
155_A	222_L	1.841	0.98
231_A	248_T	1.829	0.98
227_S	266_D	1.799	0.98
267_L	278_I	1.780	0.98
243_K	247_E	1.778	0.98
135_R	158_F	1.770	0.98
172_R	206_D	1.729	0.97
143_K	148_E	1.723	0.97
260_A	280_C	1.718	0.97
201_V	225_A	1.698	0.97
56_V	96_T	1.692	0.97
135_R	156_D	1.685	0.97
147_L	240_P	1.666	0.97
48_I	260_A	1.653	0.97
115_Q	169_F	1.652	0.97
95_L	125_M	1.626	0.96
172_R	204_W	1.617	0.96
202_S	281_R	1.585	0.96
179_V	201_V	1.582	0.96
223_H	227_S	1.580	0.95
182_L	250_Y	1.560	0.95
50_H	131_T	1.552	0.95
49_Q	296_C	1.500	0.94
181_T	199_G	1.495	0.94
84_P	256_V	1.454	0.93
182_L	249_A	1.415	0.92
75_A	134_V	1.394	0.91
35_K	40_I	1.392	0.91
265_A	269_E	1.344	0.90
277_E	294_K	1.343	0.90
65_A	223_H	1.317	0.89
61_T	70_E	1.304	0.88
182_L	192_Y	1.301	0.88
122_A	130_A	1.300	0.88
118_T	161_V	1.290	0.88
231_A	245_V	1.290	0.88
201_V	263_I	1.281	0.87
129_S	164_R	1.267	0.87
57_S	76_N	1.267	0.87
53_V	56_V	1.265	0.87
101_V	120_E	1.252	0.86
194_A	246_T	1.228	0.85
89_G	93_S	1.222	0.85
177_A	225_A	1.214	0.84
202_S	279_E	1.209	0.84
186_S	246_T	1.208	0.84
200_T	283_E	1.203	0.84
65_A	219_A	1.201	0.84
259_L	282_N	1.199	0.84
178_K	233_L	1.195	0.83
179_V	259_L	1.191	0.83
186_S	194_A	1.175	0.82
82_N	129_S	1.164	0.82
79_M	148_E	1.160	0.82
199_G	280_C	1.147	0.81
220_D	272_W	1.143	0.81
142_R	223_H	1.124	0.80
113_S	117_F	1.124	0.80
234_H	244_A	1.123	0.79
189_I	243_K	1.122	0.79
223_H	232_R	1.121	0.79
119_K	163_Y	1.110	0.79
95_L	288_L	1.108	0.79
60_V	75_A	1.105	0.78
57_S	154_H	1.102	0.78
204_W	277_E	1.101	0.78
140_F	155_A	1.077	0.77
128_S	165_K	1.074	0.76
131_T	162_T	1.066	0.76
96_T	191_E	1.054	0.75
130_A	275_A	1.049	0.75
88_K	282_N	1.047	0.74
246_T	250_Y	1.046	0.74
279_E	294_K	1.044	0.74
117_F	132_V	1.038	0.74
173_A	207_I	1.027	0.73
182_L	193_S	1.019	0.72
221_L	225_A	1.011	0.72
190_S	246_T	1.011	0.72
180_T	282_N	1.007	0.72
163_Y	169_F	0.996	0.71
248_T	252_N	0.995	0.71
140_F	222_L	0.993	0.70
84_P	128_S	0.988	0.70
263_I	278_I	0.983	0.70
154_H	288_L	0.974	0.69
86_N	165_K	0.972	0.69
146_K	244_A	0.972	0.69
80_T	131_T	0.965	0.68
140_F	223_H	0.961	0.68
185_C	196_N	0.955	0.67
80_T	133_E	0.951	0.67
114_L	290_D	0.949	0.67
115_Q	119_K	0.948	0.67
283_E	290_D	0.941	0.66
231_A	234_H	0.939	0.66
89_G	94_R	0.937	0.66
91_N	193_S	0.930	0.65
182_L	246_T	0.930	0.65
136_F	178_K	0.929	0.65
180_T	231_A	0.923	0.65
165_K	168_P	0.923	0.65
114_L	161_V	0.922	0.65
189_I	194_A	0.908	0.63
49_Q	64_S	0.907	0.63
35_K	282_N	0.901	0.63
185_C	239_R	0.900	0.63
192_Y	250_Y	0.894	0.62
276_F	297_F	0.884	0.61
155_A	226_E	0.884	0.61
98_L	121_L	0.878	0.61
237_L	245_V	0.871	0.60
54_A	281_R	0.867	0.60
194_A	243_K	0.866	0.60
243_K	246_T	0.865	0.60
42_K	46_F	0.863	0.59
90_I	189_I	0.861	0.59
159_M	171_Q	0.852	0.58
62_I	137_P	0.852	0.58
40_I	86_N	0.850	0.58
188_E	196_N	0.850	0.58
189_I	193_S	0.849	0.58
131_T	160_S	0.846	0.58
186_S	190_S	0.846	0.58
174_G	202_S	0.840	0.57
80_T	292_Y	0.837	0.57
228_N	262_L	0.824	0.56
99_L	221_L	0.823	0.56
55_N	143_K	0.818	0.55
151_G	235_P	0.817	0.55
56_V	100_Q	0.815	0.55
154_H	290_D	0.813	0.55
90_I	288_L	0.812	0.55
46_F	264_A	0.811	0.55
145_P	246_T	0.810	0.55
206_D	275_A	0.808	0.54
238_K	255_F	0.808	0.54
173_A	222_L	0.805	0.54
203_I	221_L	0.800	0.54
71_Q	137_P	0.794	0.53
128_S	164_R	0.793	0.53
187_K	192_Y	0.791	0.53
87_Q	91_N	0.788	0.53
130_A	141_E	0.780	0.52
91_N	262_L	0.778	0.52
92_M	291_A	0.778	0.52
55_N	170_K	0.778	0.52
149_K	290_D	0.773	0.51
264_A	276_F	0.772	0.51
164_R	167_Q	0.772	0.51
61_T	72_T	0.771	0.51
145_P	230_S	0.771	0.51
244_A	248_T	0.766	0.51
196_N	250_Y	0.766	0.51
187_K	250_Y	0.764	0.50
177_A	222_L	0.759	0.50
55_N	290_D	0.757	0.50
187_K	193_S	0.755	0.50
78_T	135_R	0.747	0.49
151_G	199_G	0.745	0.49
56_V	199_G	0.744	0.48
188_E	270_L	0.739	0.48
264_A	295_L	0.735	0.48
187_K	246_T	0.734	0.48
42_K	45_F	0.733	0.47
101_V	110_S	0.728	0.47
198_R	291_A	0.727	0.47
223_H	278_I	0.724	0.47
225_A	263_I	0.719	0.46
237_L	286_I	0.719	0.46
179_V	229_A	0.717	0.46
38_Q	247_E	0.712	0.46
40_I	167_Q	0.710	0.45
116_Q	119_K	0.710	0.45
246_T	286_I	0.708	0.45
111_F	134_V	0.708	0.45
145_P	245_V	0.706	0.45
48_I	159_M	0.705	0.45
189_I	246_T	0.704	0.45
40_I	88_K	0.703	0.45
193_S	246_T	0.700	0.44
88_K	256_V	0.700	0.44
34_M	290_D	0.698	0.44
162_T	172_R	0.697	0.44
142_R	290_D	0.696	0.44
120_E	124_N	0.687	0.43
142_R	247_E	0.686	0.43
244_A	247_E	0.685	0.43
89_G	92_M	0.685	0.43
54_A	296_C	0.677	0.42
101_V	164_R	0.677	0.42
60_V	77_F	0.672	0.42
54_A	78_T	0.671	0.42
139_F	154_H	0.671	0.42
199_G	259_L	0.669	0.42
183_C	255_F	0.668	0.42
183_C	195_H	0.664	0.41
75_A	233_L	0.660	0.41
144_S	236_V	0.657	0.41
45_F	188_E	0.657	0.41
186_S	291_A	0.651	0.40
249_A	286_I	0.650	0.40
187_K	194_A	0.649	0.40
182_L	196_N	0.646	0.40
259_L	280_C	0.645	0.39
105_N	109_L	0.642	0.39
101_V	148_E	0.642	0.39
138_W	222_L	0.640	0.39
73_T	137_P	0.639	0.39
181_T	254_R	0.638	0.39
183_C	261_R	0.637	0.39
37_L	81_C	0.635	0.39
184_P	197_Q	0.632	0.38
279_E	292_Y	0.631	0.38
206_D	274_S	0.628	0.38
67_M	165_K	0.627	0.38
79_M	181_T	0.625	0.38
190_S	194_A	0.625	0.38
78_T	292_Y	0.622	0.37
229_A	246_T	0.620	0.37
145_P	234_H	0.620	0.37
211_A	270_L	0.620	0.37
53_V	96_T	0.620	0.37
81_C	95_L	0.620	0.37
38_Q	236_V	0.619	0.37
35_K	199_G	0.619	0.37
44_Y	196_N	0.618	0.37
145_P	286_I	0.616	0.37
162_T	209_P	0.614	0.37
91_N	232_R	0.610	0.36
60_V	170_K	0.609	0.36
181_T	282_N	0.608	0.36
40_I	55_N	0.608	0.36
34_M	134_V	0.608	0.36
81_C	144_S	0.606	0.36
37_L	244_A	0.605	0.36
237_L	243_K	0.605	0.36
143_K	209_P	0.604	0.36
84_P	125_M	0.602	0.36
63_T	110_S	0.600	0.36
189_I	199_G	0.599	0.35
146_K	178_K	0.597	0.35
142_R	281_R	0.596	0.35
57_S	74_A	0.596	0.35
54_A	279_E	0.596	0.35
73_T	295_L	0.595	0.35
225_A	228_N	0.593	0.35
47_D	181_T	0.590	0.35
97_E	124_N	0.589	0.35
97_E	236_V	0.589	0.35
67_M	123_E	0.589	0.35
66_M	69_A	0.588	0.34
115_Q	209_P	0.587	0.34
43_D	104_Q	0.586	0.34
63_T	219_A	0.584	0.34
179_V	199_G	0.583	0.34
78_T	165_K	0.581	0.34
186_S	241_D	0.581	0.34
61_T	221_L	0.576	0.33
34_M	228_N	0.572	0.33
278_I	295_L	0.572	0.33
181_T	266_D	0.570	0.33
137_P	156_D	0.568	0.33
161_V	171_Q	0.568	0.33
178_K	281_R	0.568	0.33
88_K	103_H	0.568	0.33
64_S	69_A	0.566	0.33
60_V	133_E	0.566	0.33
220_D	270_L	0.566	0.33
144_S	292_Y	0.565	0.33
151_G	244_A	0.562	0.32
262_L	290_D	0.561	0.32
60_V	165_K	0.560	0.32
81_C	267_L	0.560	0.32
144_S	293_A	0.559	0.32
194_A	250_Y	0.559	0.32
63_T	209_P	0.558	0.32
209_P	274_S	0.558	0.32
182_L	233_L	0.557	0.32
86_N	164_R	0.556	0.32
212_S	219_A	0.555	0.32
118_T	163_Y	0.554	0.32
145_P	282_N	0.554	0.32
113_S	116_Q	0.552	0.32
74_A	137_P	0.552	0.32
266_D	269_E	0.549	0.31
114_L	159_M	0.546	0.31
195_H	257_E	0.546	0.31
61_T	105_N	0.545	0.31
186_S	243_K	0.545	0.31
62_I	71_Q	0.545	0.31
43_D	269_E	0.545	0.31
124_N	203_I	0.543	0.31
62_I	173_A	0.543	0.31
76_N	208_H	0.541	0.31
100_Q	117_F	0.539	0.30
182_L	243_K	0.538	0.30
197_Q	287_H	0.536	0.30
184_P	287_H	0.536	0.30
145_P	189_I	0.535	0.30
44_Y	146_K	0.534	0.30
53_V	253_P	0.532	0.30
64_S	71_Q	0.532	0.30
189_I	229_A	0.532	0.30
257_E	261_R	0.531	0.30
64_S	98_L	0.531	0.30
127_T	140_F	0.528	0.30
183_C	284_E	0.528	0.30
70_E	132_V	0.527	0.30
203_I	263_I	0.527	0.30
250_Y	286_I	0.527	0.30
59_P	190_S	0.526	0.29
147_L	241_D	0.526	0.29
59_P	179_V	0.524	0.29
47_D	100_Q	0.524	0.29
173_A	211_A	0.524	0.29
126_D	161_V	0.523	0.29
183_C	198_R	0.522	0.29
165_K	274_S	0.522	0.29
258_D	284_E	0.516	0.29
49_Q	56_V	0.515	0.29
179_V	194_A	0.515	0.29
83_L	144_S	0.514	0.29
190_S	250_Y	0.514	0.29
64_S	80_T	0.513	0.28
86_N	134_V	0.513	0.28
86_N	119_K	0.512	0.28
147_L	199_G	0.511	0.28
63_T	66_M	0.510	0.28
183_C	258_D	0.509	0.28
285_S	289_H	0.508	0.28
119_K	164_R	0.506	0.28
195_H	255_F	0.506	0.28
179_V	246_T	0.505	0.28
81_C	181_T	0.505	0.28
48_I	232_R	0.505	0.28
237_L	246_T	0.504	0.28
270_L	273_V	0.503	0.28
97_E	256_V	0.502	0.28
65_A	212_S	0.501	0.28
117_F	265_A	0.501	0.28
39_N	248_T	0.501	0.28
242_E	261_R	0.500	0.28
60_V	208_H	0.500	0.28

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2r5rA	4	0.8092	100	0.129	Contact Map
3d2oA	4	0.8026	100	0.137	Contact Map
3v9oA	3	0.375	32.9	0.968	Contact Map
1sqlA	5	0.375	22.2	0.97	Contact Map
2o90A	4	0.352	17.7	0.972	Contact Map
1b9lA	4	0.3651	14	0.973	Contact Map
1sczA	4	0.3059	13.9	0.973	Contact Map
3o1kA	4	0.3651	12.6	0.973	Contact Map
1dhnA	4	0.3684	10.4	0.974	Contact Map
1nbuA	4	0.3586	10.1	0.975	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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