YCGO - BACSU - GREMLIN Contacts

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YCGO - Uncharacterized symporter YcgO

UniProt:	P94392	Sequences: MLLIGYFAYKRTSNLTDYMLGGRSLGPAVTALSAGAADMSGWLLMGLPGAMFSTGLSGAWIVIGLCLGAWANWLYVAPRLRTYTEKAGNSITIPGFLENRFGDQTKLLRLFSGIVILVFFTFYVSSGMVSGGVLFNSILGMDYHTGLWIVTGVVVAYTLFGGFLAVSWTDFVQGIIMFAALILVPIVTFFHTGGAGDTVAEIRSVDPDMFNIFKGTSVLGIISLFAWGLGYFGQPHIIVRFMAITSVKEIKRARRIGMGWMILSAVGAVLTGLGGIAYYHQRGMTLKDPETIFIQLGNILFHPIITGFLISAILAAIMSTISSQLLVTSSSLVEDLYKSMFRRSASDKELVFLGRLAVLAVSIVALVLAWEKNNTILGLVSYAWAGFGASFGPVVLLSLFWKRMTKWGALAGMIVGAATVIIWANAGLSDFLYEMIPGFAASLLSVFFVSILTQAPSQAVTDQFNDYQDTMSQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	473 (443)
Sequences:	11434 (7111)
Seq/√Len:	337.9

ECOLI - PUTP ACTP PANF YIDK
BACSU - YCGO OPUE YWCA YHJB YODF
HALSA - Q9HR16 Q9HP63
SULSO - Q7LX83 Q97VX6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
415_V	445_S	5.964	1.00
346_S	349_E	4.308	1.00
246_S	249_E	3.980	1.00
404_M	446_V	3.962	1.00
342_R	349_E	3.610	1.00
155_V	362_S	3.325	1.00
415_V	441_A	3.302	1.00
186_I	190_F	3.209	1.00
411_A	449_V	3.170	1.00
412_G	446_V	3.118	1.00
197_D	200_A	3.090	1.00
447_F	451_I	3.084	1.00
337_Y	345_A	3.051	1.00
405_T	453_T	3.039	1.00
445_S	449_V	3.034	1.00
82_T	247_V	3.032	1.00
188_T	274_G	2.998	1.00
3_L	7_F	2.933	1.00
419_T	441_A	2.924	1.00
348_K	352_F	2.845	1.00
449_V	453_T	2.819	1.00
407_W	453_T	2.759	1.00
352_F	356_L	2.724	1.00
142_D	145_T	2.665	1.00
408_G	450_S	2.644	1.00
397_L	446_V	2.564	1.00
151_T	366_L	2.511	1.00
356_L	360_A	2.388	1.00
275_G	292_I	2.364	1.00
163_F	243_A	2.358	1.00
98_E	109_R	2.355	1.00
209_M	213_F	2.343	1.00
25_L	167_S	2.330	1.00
16_T	23_R	2.319	1.00
245_T	249_E	2.255	1.00
345_A	349_E	2.152	1.00
411_A	445_S	2.136	1.00
49_G	290_E	2.108	1.00
405_T	408_G	2.101	1.00
407_W	411_A	2.090	1.00
394_V	409_A	2.083	1.00
200_A	204_S	2.070	1.00
401_W	404_M	2.052	1.00
96_F	398_S	2.029	1.00
148_W	152_G	2.024	1.00
17_D	22_G	2.023	1.00
197_D	201_E	2.001	1.00
182_I	186_I	1.988	1.00
107_L	410_L	1.966	1.00
363_I	367_V	1.944	1.00
334_E	338_K	1.932	1.00
408_G	449_V	1.927	1.00
20_L	23_R	1.924	1.00
101_F	404_M	1.918	1.00
248_K	252_R	1.899	1.00
418_A	422_I	1.890	1.00
279_Y	299_I	1.887	1.00
208_D	211_N	1.878	1.00
41_G	130_S	1.873	1.00
90_S	99_N	1.864	1.00
403_R	454_Q	1.854	1.00
444_L	448_F	1.842	1.00
180_A	312_A	1.837	1.00
249_E	252_R	1.832	1.00
405_T	450_S	1.811	1.00
29_V	171_F	1.785	1.00
338_K	350_L	1.780	1.00
397_L	443_L	1.779	1.00
337_Y	353_L	1.767	1.00
342_R	345_A	1.765	1.00
307_G	311_S	1.765	1.00
248_K	251_K	1.764	1.00
161_G	165_A	1.735	1.00
154_V	321_I	1.733	1.00
211_N	214_K	1.728	1.00
295_Q	299_I	1.712	1.00
401_W	447_F	1.681	1.00
27_P	249_E	1.677	1.00
98_E	106_K	1.669	1.00
401_W	451_I	1.646	1.00
352_F	355_R	1.639	1.00
209_M	212_I	1.637	1.00
196_G	200_A	1.635	1.00
408_G	412_G	1.622	1.00
411_A	415_V	1.591	1.00
337_Y	342_R	1.578	1.00
332_L	336_L	1.574	1.00
201_E	204_S	1.566	1.00
32_L	171_F	1.560	1.00
200_A	203_R	1.558	1.00
152_G	156_A	1.527	1.00
325_L	362_S	1.521	1.00
415_V	419_T	1.508	1.00
95_G	335_D	1.508	1.00
403_R	451_I	1.506	1.00
133_V	288_D	1.480	1.00
440_A	444_L	1.464	1.00
203_R	206_D	1.456	1.00
332_L	357_A	1.444	1.00
213_F	216_T	1.440	1.00
30_T	244_I	1.436	1.00
102_G	107_L	1.427	1.00
76_V	396_L	1.425	1.00
102_G	406_K	1.420	1.00
145_T	149_I	1.417	1.00
132_G	147_L	1.412	1.00
14_N	17_D	1.398	1.00
115_V	417_A	1.393	1.00
337_Y	349_E	1.390	1.00
170_D	240_R	1.375	1.00
328_T	361_V	1.361	1.00
349_E	352_F	1.349	1.00
295_Q	298_N	1.339	1.00
154_V	318_M	1.332	1.00
201_E	277_A	1.321	1.00
145_T	148_W	1.316	1.00
95_G	334_E	1.314	1.00
345_A	350_L	1.305	1.00
422_I	426_A	1.301	1.00
106_K	339_S	1.296	1.00
144_H	148_W	1.291	1.00
403_R	455_A	1.290	1.00
21_G	25_L	1.278	1.00
351_V	355_R	1.277	1.00
79_R	83_Y	1.270	1.00
19_M	354_G	1.263	1.00
114_I	118_V	1.261	1.00
100_R	398_S	1.258	1.00
405_T	454_Q	1.258	1.00
147_L	366_L	1.249	1.00
111_F	410_L	1.247	1.00
151_T	362_S	1.242	1.00
98_E	339_S	1.239	1.00
192_T	198_T	1.239	1.00
419_T	445_S	1.234	1.00
332_L	337_Y	1.226	1.00
441_A	445_S	1.225	1.00
96_F	100_R	1.211	1.00
128_M	151_T	1.203	1.00
78_P	82_T	1.201	1.00
169_T	322_S	1.200	1.00
412_G	416_G	1.199	1.00
175_I	179_A	1.196	1.00
4_I	172_V	1.194	1.00
79_R	82_T	1.193	1.00
170_D	322_S	1.193	1.00
131_G	150_V	1.193	1.00
412_G	442_S	1.191	1.00
31_A	256_I	1.188	1.00
92_T	330_S	1.179	1.00
349_E	353_L	1.171	1.00
193_G	197_D	1.167	1.00
106_K	110_L	1.166	1.00
191_H	278_Y	1.165	1.00
37_A	323_S	1.157	1.00
141_M	146_G	1.155	1.00
211_N	215_G	1.143	1.00
187_V	191_H	1.134	1.00
407_W	449_V	1.134	1.00
379_L	383_A	1.131	1.00
108_L	410_L	1.126	1.00
148_W	366_L	1.126	1.00
51_M	58_G	1.124	1.00
112_S	413_M	1.124	1.00
107_L	111_F	1.119	1.00
437_P	440_A	1.116	1.00
443_L	447_F	1.113	1.00
333_V	354_G	1.111	1.00
297_G	309_L	1.109	1.00
195_A	199_V	1.109	1.00
21_G	163_F	1.106	1.00
416_G	420_V	1.101	1.00
33_S	323_S	1.098	1.00
357_A	360_A	1.094	1.00
109_R	335_D	1.093	1.00
173_Q	322_S	1.090	1.00
59_A	63_I	1.089	1.00
136_N	143_Y	1.085	1.00
405_T	449_V	1.077	1.00
179_A	183_L	1.071	1.00
77_A	81_R	1.069	1.00
440_A	443_L	1.064	1.00
124_V	365_A	1.063	1.00
108_L	409_A	1.062	1.00
445_S	448_F	1.057	1.00
333_V	353_L	1.057	1.00
196_G	199_V	1.055	1.00
157_Y	322_S	1.052	1.00
119_F	386_G	1.050	1.00
53_S	289_P	1.049	1.00
157_Y	318_M	1.048	1.00
394_V	413_M	1.039	1.00
407_W	452_L	1.035	1.00
125_S	368_L	1.033	1.00
128_M	147_L	1.032	1.00
406_K	410_L	1.031	1.00
35_G	260_W	1.026	1.00
27_P	31_A	1.024	1.00
183_L	187_V	1.021	1.00
345_A	353_L	1.021	1.00
390_S	442_S	1.018	1.00
203_R	207_P	1.012	1.00
183_L	305_I	1.007	1.00
218_V	221_I	1.004	1.00
404_M	450_S	1.003	1.00
198_T	202_I	1.002	1.00
288_D	291_T	0.997	1.00
274_G	278_Y	0.997	1.00
212_I	216_T	0.993	1.00
341_F	345_A	0.990	1.00
286_L	289_P	0.990	1.00
101_F	398_S	0.987	1.00
294_I	297_G	0.984	1.00
66_C	262_I	0.984	1.00
435_M	439_F	0.982	1.00
353_L	357_A	0.982	1.00
154_V	322_S	0.980	1.00
397_L	404_M	0.979	1.00
209_M	214_K	0.976	1.00
347_D	350_L	0.975	1.00
393_P	443_L	0.973	1.00
19_M	330_S	0.971	1.00
75_Y	79_R	0.968	1.00
114_I	336_L	0.967	1.00
210_F	214_K	0.963	1.00
71_A	75_Y	0.962	1.00
78_P	251_K	0.960	1.00
12_T	17_D	0.960	1.00
354_G	358_V	0.959	1.00
33_S	36_A	0.953	1.00
97_L	112_S	0.951	1.00
332_L	361_V	0.950	1.00
404_M	408_G	0.949	1.00
398_S	409_A	0.948	1.00
414_I	418_A	0.942	1.00
220_G	224_L	0.941	1.00
3_L	6_Y	0.939	1.00
212_I	215_G	0.933	1.00
217_S	220_G	0.930	1.00
199_V	203_R	0.928	1.00
244_I	250_I	0.925	1.00
380_V	384_W	0.925	1.00
107_L	406_K	0.919	1.00
201_E	205_V	0.919	1.00
208_D	214_K	0.912	1.00
416_G	442_S	0.912	1.00
117_L	332_L	0.912	1.00
5_G	8_A	0.908	1.00
170_D	323_S	0.907	1.00
275_G	296_L	0.903	1.00
29_V	167_S	0.900	1.00
111_F	413_M	0.898	1.00
329_S	333_V	0.898	1.00
199_V	202_I	0.897	1.00
208_D	212_I	0.896	1.00
185_P	267_G	0.896	1.00
210_F	213_F	0.895	1.00
360_A	364_V	0.894	1.00
326_L	329_S	0.892	1.00
97_L	108_L	0.891	1.00
407_W	454_Q	0.891	1.00
169_T	173_Q	0.889	1.00
9_Y	12_T	0.887	1.00
448_F	451_I	0.886	1.00
50_A	54_T	0.886	1.00
27_P	252_R	0.880	1.00
7_F	10_K	0.878	1.00
143_Y	147_L	0.877	1.00
37_A	170_D	0.870	1.00
159_L	359_L	0.869	1.00
403_R	456_P	0.868	1.00
194_G	197_D	0.867	1.00
181_L	268_A	0.865	1.00
41_G	317_I	0.864	1.00
198_T	274_G	0.864	1.00
173_Q	315_A	0.862	1.00
397_L	447_F	0.861	1.00
107_L	110_L	0.859	1.00
66_C	258_M	0.857	1.00
64_G	68_G	0.856	1.00
168_W	171_F	0.855	1.00
157_Y	173_Q	0.853	1.00
408_G	411_A	0.852	1.00
297_G	306_T	0.851	1.00
363_I	366_L	0.848	1.00
33_S	240_R	0.846	1.00
115_V	413_M	0.845	1.00
33_S	37_A	0.843	1.00
101_F	446_V	0.842	1.00
33_S	167_S	0.842	1.00
4_I	8_A	0.842	1.00
51_M	273_L	0.842	1.00
157_Y	319_S	0.837	1.00
442_S	446_V	0.835	1.00
102_G	457_S	0.833	1.00
230_G	235_P	0.832	1.00
401_W	450_S	0.831	1.00
141_M	149_I	0.831	1.00
74_L	255_R	0.831	1.00
255_R	259_G	0.830	1.00
405_T	455_A	0.829	1.00
422_I	425_N	0.829	1.00
382_Y	424_A	0.827	1.00
319_S	322_S	0.827	1.00
202_I	206_D	0.823	1.00
32_L	174_G	0.823	1.00
443_L	446_V	0.821	1.00
410_L	414_I	0.818	1.00
337_Y	343_R	0.816	1.00
21_G	243_A	0.815	1.00
166_V	169_T	0.813	1.00
36_A	240_R	0.809	1.00
100_R	401_W	0.802	1.00
208_D	213_F	0.802	1.00
184_V	293_F	0.801	1.00
40_S	123_Y	0.801	1.00
8_A	12_T	0.801	1.00
78_P	247_V	0.800	1.00
337_Y	341_F	0.800	1.00
423_W	437_P	0.798	1.00
210_F	215_G	0.797	1.00
144_H	370_W	0.796	1.00
394_V	442_S	0.796	1.00
441_A	444_L	0.795	1.00
341_F	344_S	0.794	1.00
291_T	295_Q	0.794	1.00
94_P	112_S	0.792	1.00
178_F	182_I	0.791	1.00
184_V	188_T	0.791	1.00
301_F	305_I	0.789	1.00
209_M	215_G	0.784	1.00
25_L	30_T	0.783	1.00
26_G	249_E	0.781	1.00
332_L	353_L	0.778	1.00
448_F	452_L	0.776	1.00
52_F	286_L	0.775	1.00
191_H	300_L	0.775	1.00
192_T	277_A	0.774	1.00
377_L	381_S	0.773	1.00
6_Y	9_Y	0.771	1.00
132_G	143_Y	0.770	1.00
12_T	351_V	0.770	1.00
427_G	430_D	0.768	1.00
356_L	359_L	0.767	1.00
123_Y	235_P	0.766	1.00
304_I	308_F	0.764	1.00
190_F	195_A	0.763	1.00
146_G	150_V	0.760	1.00
106_K	109_R	0.757	1.00
338_K	343_R	0.755	1.00
188_T	191_H	0.754	1.00
374_N	378_G	0.754	1.00
136_N	140_G	0.751	1.00
419_T	422_I	0.750	1.00
244_I	249_E	0.749	1.00
56_L	273_L	0.748	1.00
376_I	380_V	0.748	1.00
358_V	362_S	0.746	1.00
147_L	369_A	0.746	1.00
401_W	408_G	0.746	1.00
173_Q	318_M	0.746	1.00
187_V	190_F	0.745	0.99
110_L	340_M	0.742	0.99
117_L	328_T	0.737	0.99
415_V	449_V	0.737	0.99
27_P	256_I	0.735	0.99
452_L	455_A	0.735	0.99
81_R	247_V	0.733	0.99
6_Y	160_F	0.733	0.99
198_T	201_E	0.731	0.99
61_I	65_L	0.731	0.99
229_L	392_G	0.729	0.99
381_S	385_A	0.728	0.99
439_F	442_S	0.727	0.99
453_T	456_P	0.726	0.99
434_E	438_G	0.724	0.99
192_T	197_D	0.722	0.99
205_V	276_I	0.721	0.99
218_V	222_I	0.721	0.99
83_Y	90_S	0.720	0.99
131_G	317_I	0.720	0.99
157_Y	165_A	0.719	0.99
271_T	296_L	0.719	0.99
5_G	9_Y	0.717	0.99
18_Y	358_V	0.717	0.99
258_M	262_I	0.717	0.99
133_V	136_N	0.716	0.99
95_G	99_N	0.716	0.99
381_S	384_W	0.715	0.99
416_G	419_T	0.714	0.99
92_T	335_D	0.714	0.99
205_V	209_M	0.713	0.99
111_F	414_I	0.712	0.99
75_Y	78_P	0.712	0.99
259_G	263_L	0.711	0.99
206_D	209_M	0.711	0.99
127_G	320_T	0.711	0.99
444_L	447_F	0.710	0.99
419_T	423_W	0.709	0.99
198_T	277_A	0.709	0.99
173_Q	319_S	0.709	0.99
148_W	363_I	0.705	0.99
166_V	323_S	0.704	0.99
52_F	281_Q	0.704	0.99
329_S	358_V	0.703	0.99
454_Q	457_S	0.702	0.99
286_L	295_Q	0.701	0.99
236_H	239_V	0.699	0.99
436_I	440_A	0.699	0.99
420_V	438_G	0.698	0.99
438_G	442_S	0.697	0.99
411_A	414_I	0.696	0.99
7_F	11_R	0.696	0.99
429_S	437_P	0.696	0.99
189_F	270_L	0.694	0.99
447_F	450_S	0.693	0.99
163_F	167_S	0.692	0.99
8_A	168_W	0.692	0.99
271_T	293_F	0.692	0.99
218_V	223_S	0.691	0.99
91_I	95_G	0.690	0.99
110_L	114_I	0.687	0.99
340_M	343_R	0.686	0.99
44_L	309_L	0.684	0.99
133_V	290_E	0.684	0.99
276_I	292_I	0.683	0.99
296_L	300_L	0.682	0.99
127_G	321_I	0.682	0.99
182_I	185_P	0.681	0.99
77_A	250_I	0.680	0.99
276_I	280_H	0.680	0.99
401_W	405_T	0.679	0.99
219_L	223_S	0.679	0.99
202_I	205_V	0.676	0.99
36_A	173_Q	0.673	0.99
13_S	17_D	0.671	0.99
43_L	265_A	0.671	0.99
173_Q	320_T	0.671	0.99
44_L	181_L	0.669	0.99
220_G	223_S	0.668	0.99
417_A	421_I	0.667	0.99
405_T	409_A	0.667	0.99
409_A	416_G	0.666	0.99
94_P	116_I	0.665	0.99
329_S	357_A	0.664	0.99
129_V	133_V	0.663	0.99
158_T	322_S	0.662	0.99
227_W	230_G	0.661	0.99
70_W	74_L	0.659	0.99
320_T	324_Q	0.659	0.99
197_D	277_A	0.658	0.99
52_F	292_I	0.658	0.99
291_T	294_I	0.657	0.99
183_L	186_I	0.656	0.99
50_A	58_G	0.655	0.99
371_E	374_N	0.655	0.99
421_I	425_N	0.655	0.99
26_G	29_V	0.654	0.99
101_F	409_A	0.654	0.99
18_Y	355_R	0.651	0.99
28_A	32_L	0.649	0.99
17_D	164_L	0.648	0.99
108_L	112_S	0.648	0.99
189_F	198_T	0.647	0.99
432_L	436_I	0.647	0.99
155_V	359_L	0.647	0.99
252_R	256_I	0.646	0.99
324_Q	327_V	0.646	0.99
38_D	384_W	0.644	0.99
403_R	406_K	0.644	0.99
221_I	224_L	0.642	0.99
6_Y	10_K	0.641	0.98
191_H	195_A	0.639	0.98
333_V	337_Y	0.639	0.98
397_L	401_W	0.637	0.98
135_F	146_G	0.637	0.98
404_M	412_G	0.637	0.98
62_V	69_A	0.637	0.98
102_G	108_L	0.637	0.98
209_M	216_T	0.635	0.98
110_L	113_G	0.634	0.98
228_G	235_P	0.634	0.98
116_I	331_S	0.632	0.98
195_A	198_T	0.630	0.98
318_M	322_S	0.629	0.98
189_F	194_G	0.628	0.98
188_T	300_L	0.628	0.98
424_A	434_E	0.627	0.98
10_K	13_S	0.625	0.98
128_M	165_A	0.624	0.98
68_G	72_N	0.624	0.98
429_S	432_L	0.623	0.98
350_L	354_G	0.622	0.98
109_R	339_S	0.622	0.98
359_L	363_I	0.622	0.98
164_L	168_W	0.622	0.98
338_K	347_D	0.621	0.98
40_S	44_L	0.621	0.98
227_W	234_Q	0.620	0.98
366_L	369_A	0.620	0.98
80_L	238_I	0.620	0.98
380_V	383_A	0.619	0.98
298_N	306_T	0.619	0.98
245_T	248_K	0.618	0.98
11_R	164_L	0.617	0.98
231_Y	235_P	0.616	0.98
206_D	210_F	0.615	0.98
5_G	10_K	0.613	0.98
68_G	228_G	0.612	0.98
227_W	231_Y	0.609	0.98
15_L	19_M	0.609	0.98
61_I	64_G	0.607	0.98
33_S	170_D	0.606	0.98
419_T	438_G	0.606	0.98
344_S	349_E	0.603	0.98
181_L	267_G	0.599	0.98
418_A	421_I	0.597	0.98
123_Y	324_Q	0.595	0.98
279_Y	295_Q	0.594	0.98
97_L	394_V	0.594	0.98
28_A	171_F	0.593	0.97
269_V	273_L	0.592	0.97
241_F	254_R	0.591	0.97
124_V	321_I	0.591	0.97
170_D	319_S	0.591	0.97
50_A	53_S	0.591	0.97
29_V	168_W	0.590	0.97
202_I	273_L	0.589	0.97
289_P	292_I	0.589	0.97
167_S	170_D	0.588	0.97
25_L	243_A	0.587	0.97
433_Y	437_P	0.587	0.97
31_A	35_G	0.587	0.97
23_R	81_R	0.587	0.97
148_W	151_T	0.586	0.97
155_V	159_L	0.581	0.97
30_T	33_S	0.580	0.97
431_F	435_M	0.580	0.97
14_N	22_G	0.580	0.97
136_N	142_D	0.580	0.97
333_V	357_A	0.579	0.97
404_M	409_A	0.579	0.97
286_L	291_T	0.578	0.97
77_A	80_L	0.578	0.97
364_V	367_V	0.577	0.97
380_V	388_G	0.576	0.97
38_D	65_L	0.576	0.97
393_P	446_V	0.576	0.97
389_A	393_P	0.576	0.97
35_G	174_G	0.576	0.97
61_I	68_G	0.575	0.97
133_V	137_S	0.575	0.97
278_Y	296_L	0.574	0.97
325_L	358_V	0.573	0.97
36_A	174_G	0.572	0.97
333_V	350_L	0.572	0.97
211_N	216_T	0.570	0.97
72_N	77_A	0.569	0.97
355_R	358_V	0.569	0.97
66_C	69_A	0.569	0.97
151_T	369_A	0.568	0.97
185_P	270_L	0.567	0.97
35_G	264_S	0.567	0.97
365_A	369_A	0.565	0.97
65_L	68_G	0.565	0.97
90_S	96_F	0.565	0.97
8_A	11_R	0.564	0.97
141_M	145_T	0.564	0.97
338_K	344_S	0.563	0.97
449_V	452_L	0.562	0.97
179_A	182_I	0.561	0.97
408_G	445_S	0.560	0.96
109_R	113_G	0.559	0.96
392_G	396_L	0.559	0.96
37_A	236_H	0.558	0.96
132_G	146_G	0.558	0.96
189_F	195_A	0.557	0.96
337_Y	340_M	0.556	0.96
137_S	291_T	0.556	0.96
52_F	276_I	0.554	0.96
37_A	240_R	0.554	0.96
57_S	60_W	0.553	0.96
66_C	70_W	0.552	0.96
166_V	326_L	0.552	0.96
207_P	210_F	0.552	0.96
166_V	240_R	0.550	0.96
93_I	395_V	0.550	0.96
184_V	309_L	0.548	0.96
189_F	193_G	0.548	0.96
240_R	323_S	0.547	0.96
101_F	397_L	0.547	0.96
217_S	224_L	0.546	0.96
129_V	143_Y	0.546	0.96
192_T	201_E	0.546	0.96
285_T	288_D	0.546	0.96
47_L	51_M	0.545	0.96
401_W	452_L	0.545	0.96
413_M	416_G	0.545	0.96
422_I	427_G	0.544	0.96
426_A	429_S	0.542	0.96
281_Q	285_T	0.542	0.96
42_W	380_V	0.542	0.96
342_R	347_D	0.542	0.96
451_I	454_Q	0.541	0.96
122_F	383_A	0.539	0.96
26_G	30_T	0.539	0.96
46_G	123_Y	0.539	0.96
202_I	276_I	0.538	0.96
112_S	391_F	0.538	0.96
67_L	225_F	0.537	0.96
403_R	407_W	0.537	0.96
376_I	379_L	0.537	0.96
37_A	158_T	0.536	0.95
115_V	390_S	0.535	0.95
9_Y	160_F	0.534	0.95
204_S	207_P	0.533	0.95
303_P	306_T	0.531	0.95
49_G	289_P	0.530	0.95
255_R	258_M	0.529	0.95
329_S	354_G	0.528	0.95
281_Q	286_L	0.528	0.95
273_L	277_A	0.527	0.95
281_Q	287_K	0.527	0.95
302_H	305_I	0.526	0.95
38_D	261_M	0.526	0.95
127_G	130_S	0.524	0.95
16_T	91_I	0.523	0.95
198_T	273_L	0.522	0.95
64_G	69_A	0.521	0.95
116_I	391_F	0.519	0.95
324_Q	391_F	0.519	0.95
40_S	127_G	0.518	0.95
387_F	391_F	0.517	0.95
247_V	251_K	0.517	0.95
232_F	235_P	0.516	0.94
385_A	420_V	0.515	0.94
15_L	18_Y	0.515	0.94
76_V	80_L	0.513	0.94
91_I	334_E	0.512	0.94
181_L	264_S	0.511	0.94
239_V	327_V	0.511	0.94
207_P	211_N	0.510	0.94
73_W	77_A	0.510	0.94
236_H	327_V	0.510	0.94
311_S	315_A	0.510	0.94
157_Y	161_G	0.509	0.94
30_T	253_A	0.509	0.94
411_A	453_T	0.509	0.94
187_V	300_L	0.509	0.94
35_G	39_M	0.509	0.94
15_L	350_L	0.509	0.94
137_S	295_Q	0.508	0.94
147_L	151_T	0.508	0.94
343_R	346_S	0.508	0.94
261_M	265_A	0.507	0.94
301_F	304_I	0.506	0.94
202_I	209_M	0.506	0.94
110_L	336_L	0.505	0.94
403_R	450_S	0.502	0.94
127_G	324_Q	0.502	0.94
412_G	415_V	0.501	0.94
227_W	235_P	0.501	0.94
21_G	24_S	0.500	0.94
316_A	319_S	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2xq2A	2	0.9408	100	0.224	Contact Map
3dh4A	3	0.9239	100	0.236	Contact Map
3l1lA	2	0.8541	99.4	0.839	Contact Map
3giaA	1	0.8774	99.2	0.855	Contact Map
4wgvA	2	0.778	99.2	0.855	Contact Map
2jlnA	1	0.8668	99	0.87	Contact Map
4djkA	2	0.8393	98.7	0.884	Contact Map
4c7rA	3	0.871	97.2	0.918	Contact Map
2wswA	3	0.797	96.1	0.928	Contact Map
4us3A	1	0.8245	94.9	0.934	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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