YCGG - BACSU - GREMLIN Contacts

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YCGG - Uncharacterized protein YcgG

UniProt:	P94382	Sequences: MVNGIYTKSFLERIQEELPEWQRIAFELLAETLGDDADTFPCIPGRQAFLTDQLRIAFAGDPRENRTAEELAPLLAEYGKISRDTGKYASLVVLFDTPEDLAEHYSIEAYEELFWRFLNRLSHQDEKEWPEDIPADPEHYKWEFCFDGEPYFILCATPGHEARRSRSFPFFMVTFQPRWVFDDLNGSTAFGRNMSRLIRSRLEAYDQAPIHPQLGWYGGKDNREWKQYFLRDDEKQVSKCPFSYLKNMFNKMK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	253 (216)
Sequences:	418 (300)
Seq/√Len:	20.4

BACSU - YCGG YQCI
HALSA - Q9HQL8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
111_E	231_R	4.586	1.00
79_G	151_Y	4.122	1.00
175_F	181_F	3.971	1.00
153_I	173_V	3.702	1.00
57_A	74_L	3.669	1.00
119_N	123_H	3.362	1.00
218_G	224_E	3.030	0.99
59_A	74_L	2.782	0.99
106_S	109_A	2.688	0.98
59_A	71_L	2.680	0.98
68_A	117_F	2.661	0.98
165_S	202_L	2.478	0.97
40_F	152_F	2.330	0.96
85_T	89_A	2.300	0.96
119_N	122_S	2.222	0.95
224_E	227_Q	2.218	0.95
133_I	143_E	2.205	0.95
44_P	215_G	2.149	0.94
76_A	147_D	2.138	0.94
154_L	176_Q	2.040	0.92
218_G	227_Q	1.981	0.91
176_Q	181_F	1.980	0.91
60_G	96_D	1.978	0.91
161_E	208_A	1.978	0.91
127_K	147_D	1.915	0.89
57_A	91_L	1.909	0.89
41_P	202_L	1.864	0.88
66_R	124_Q	1.859	0.88
118_L	129_W	1.805	0.86
75_L	146_F	1.800	0.86
59_A	93_V	1.725	0.84
29_L	94_L	1.725	0.84
45_G	184_L	1.721	0.83
176_Q	184_L	1.711	0.83
72_A	146_F	1.678	0.82
71_L	117_F	1.671	0.82
118_L	199_R	1.644	0.80
35_D	39_T	1.620	0.79
63_R	97_T	1.588	0.78
137_P	211_H	1.585	0.78
122_S	242_F	1.584	0.78
130_P	177_P	1.576	0.78
164_R	207_Q	1.554	0.76
26_F	30_A	1.533	0.75
180_V	202_L	1.526	0.75
68_A	121_L	1.521	0.75
164_R	205_Y	1.508	0.74
124_Q	146_F	1.474	0.73
122_S	244_Y	1.441	0.71
129_W	199_R	1.438	0.71
95_F	171_F	1.436	0.70
119_N	137_P	1.423	0.70
76_A	126_E	1.422	0.70
214_L	240_C	1.381	0.67
47_Q	182_D	1.374	0.67
48_A	90_S	1.364	0.66
33_L	39_T	1.356	0.66
44_P	168_F	1.355	0.66
208_A	234_E	1.333	0.65
71_L	93_V	1.306	0.63
195_S	224_E	1.288	0.62
26_F	49_F	1.257	0.60
19_P	22_Q	1.239	0.59
122_S	207_Q	1.223	0.58
44_P	194_M	1.214	0.57
175_F	184_L	1.205	0.57
45_G	176_Q	1.203	0.56
44_P	156_A	1.192	0.56
43_I	214_L	1.174	0.55
48_A	168_F	1.174	0.55
178_R	225_W	1.173	0.55
61_D	179_W	1.172	0.54
135_A	226_K	1.170	0.54
48_A	54_L	1.163	0.54
86_G	169_P	1.159	0.54
175_F	182_D	1.157	0.53
32_T	40_F	1.140	0.52
43_I	46_R	1.129	0.52
128_E	204_A	1.126	0.51
184_L	194_M	1.114	0.51
40_F	48_A	1.110	0.50
78_Y	126_E	1.108	0.50
91_L	106_S	1.107	0.50
75_L	96_D	1.107	0.50
138_E	223_R	1.096	0.49
163_R	209_P	1.088	0.49
183_D	234_E	1.086	0.49
123_H	242_F	1.079	0.48
174_T	215_G	1.066	0.48
107_I	229_F	1.059	0.47
65_N	120_R	1.052	0.47
155_C	180_V	1.043	0.46
154_L	175_F	1.033	0.45
109_A	138_E	1.029	0.45
171_F	223_R	1.024	0.45
181_F	184_L	1.024	0.45
23_R	27_E	1.022	0.45
38_D	60_G	1.014	0.44
45_G	181_F	1.006	0.44
20_E	24_I	1.004	0.44
24_I	66_R	0.998	0.43
51_T	78_Y	0.995	0.43
81_I	85_T	0.994	0.43
177_P	195_S	0.993	0.43
112_E	135_A	0.991	0.43
142_W	230_L	0.990	0.43
165_S	233_D	0.986	0.42
146_F	156_A	0.982	0.42
63_R	98_P	0.981	0.42
181_F	227_Q	0.978	0.42
59_A	91_L	0.963	0.41
105_Y	109_A	0.959	0.41
27_E	31_E	0.956	0.40
143_E	155_C	0.936	0.39
111_E	235_K	0.930	0.39
56_I	94_L	0.927	0.39
31_E	113_L	0.926	0.39
133_I	228_Y	0.926	0.39
178_R	227_Q	0.923	0.38
79_G	194_M	0.919	0.38
79_G	147_D	0.916	0.38
176_Q	208_A	0.912	0.38
69_E	124_Q	0.908	0.37
224_E	228_Y	0.906	0.37
33_L	52_D	0.904	0.37
226_K	242_F	0.903	0.37
44_P	152_F	0.897	0.37
143_E	151_Y	0.896	0.37
90_S	175_F	0.893	0.37
142_W	202_L	0.890	0.36
185_N	211_H	0.886	0.36
30_A	49_F	0.885	0.36
217_Y	224_E	0.883	0.36
114_F	217_Y	0.883	0.36
143_E	174_T	0.881	0.36
154_L	230_L	0.878	0.36
35_D	167_S	0.877	0.36
55_R	222_N	0.871	0.35
139_H	244_Y	0.861	0.35
59_A	95_F	0.861	0.35
62_P	113_L	0.859	0.34
150_P	184_L	0.857	0.34
132_D	150_P	0.856	0.34
133_I	145_C	0.854	0.34
35_D	128_E	0.852	0.34
94_L	211_H	0.843	0.34
61_D	98_P	0.840	0.33
143_E	228_Y	0.836	0.33
180_V	229_F	0.834	0.33
145_C	213_Q	0.821	0.32
54_L	67_T	0.821	0.32
95_F	137_P	0.819	0.32
67_T	169_P	0.815	0.32
152_F	165_S	0.810	0.32
29_L	200_S	0.807	0.31
178_R	224_E	0.804	0.31
61_D	93_V	0.797	0.31
90_S	243_S	0.796	0.31
125_D	158_P	0.796	0.31
193_N	200_S	0.794	0.31
48_A	152_F	0.794	0.31
57_A	93_V	0.793	0.31
176_Q	188_T	0.793	0.31
60_G	76_A	0.791	0.31
150_P	175_F	0.789	0.30
134_P	139_H	0.786	0.30
143_E	178_R	0.783	0.30
40_F	202_L	0.779	0.30
202_L	230_L	0.778	0.30
27_E	128_E	0.777	0.30
155_C	229_F	0.771	0.29
111_E	212_P	0.770	0.29
41_P	94_L	0.770	0.29
136_D	159_G	0.769	0.29
162_A	202_L	0.768	0.29
110_Y	171_F	0.768	0.29
128_E	147_D	0.768	0.29
118_L	124_Q	0.763	0.29
176_Q	183_D	0.762	0.29
180_V	208_A	0.759	0.29
63_R	116_R	0.752	0.28
31_E	112_E	0.747	0.28
92_V	239_K	0.744	0.28
54_L	92_V	0.741	0.28
78_Y	188_T	0.739	0.28
140_Y	223_R	0.738	0.28
69_E	78_Y	0.731	0.27
130_P	150_P	0.731	0.27
211_H	225_W	0.729	0.27
163_R	211_H	0.729	0.27
49_F	76_A	0.728	0.27
111_E	182_D	0.721	0.27
24_I	77_E	0.718	0.27
58_F	165_S	0.716	0.27
222_N	235_K	0.715	0.27
211_H	233_D	0.714	0.26
40_F	187_S	0.712	0.26
78_Y	174_T	0.711	0.26
94_L	239_K	0.711	0.26
39_T	143_E	0.709	0.26
106_S	207_Q	0.707	0.26
60_G	64_E	0.706	0.26
195_S	198_I	0.705	0.26
93_V	192_R	0.705	0.26
122_S	164_R	0.705	0.26
58_F	177_P	0.704	0.26
120_R	144_F	0.696	0.26
45_G	175_F	0.691	0.25
170_F	193_N	0.691	0.25
146_F	177_P	0.690	0.25
176_Q	211_H	0.689	0.25
94_L	144_F	0.688	0.25
91_L	152_F	0.687	0.25
172_M	242_F	0.686	0.25
198_I	229_F	0.686	0.25
126_E	147_D	0.682	0.25
20_E	128_E	0.680	0.25
143_E	223_R	0.679	0.25
173_V	203_E	0.677	0.25
110_Y	163_R	0.676	0.25
145_C	155_C	0.675	0.25
43_I	49_F	0.674	0.24
177_P	217_Y	0.672	0.24
59_A	207_Q	0.667	0.24
95_F	198_I	0.663	0.24
30_A	119_N	0.653	0.23
111_E	213_Q	0.652	0.23
122_S	208_A	0.651	0.23
46_R	194_M	0.648	0.23
78_Y	91_L	0.647	0.23
46_R	208_A	0.640	0.23
211_H	229_F	0.637	0.23
29_L	201_R	0.635	0.23
88_Y	187_S	0.634	0.23
94_L	117_F	0.631	0.22
40_F	156_A	0.629	0.22
229_F	232_D	0.627	0.22
68_A	173_V	0.627	0.22
40_F	194_M	0.626	0.22
156_A	178_R	0.625	0.22
58_F	222_N	0.621	0.22
60_G	124_Q	0.621	0.22
95_F	228_Y	0.620	0.22
165_S	205_Y	0.619	0.22
153_I	175_F	0.617	0.22
57_A	243_S	0.617	0.22
31_E	204_A	0.616	0.22
40_F	214_L	0.615	0.22
53_Q	85_T	0.614	0.22
205_Y	230_L	0.613	0.22
50_L	139_H	0.612	0.22
49_F	56_I	0.609	0.21
114_F	229_F	0.608	0.21
157_T	229_F	0.606	0.21
40_F	177_P	0.603	0.21
94_L	233_D	0.603	0.21
143_E	176_Q	0.603	0.21
34_G	128_E	0.601	0.21
110_Y	190_F	0.599	0.21
75_L	91_L	0.598	0.21
67_T	117_F	0.598	0.21
156_A	171_F	0.596	0.21
77_E	93_V	0.589	0.21
65_N	69_E	0.588	0.21
52_D	158_P	0.587	0.21
154_L	168_F	0.586	0.20
181_F	240_C	0.581	0.20
153_I	197_L	0.577	0.20
143_E	180_V	0.575	0.20
201_R	218_G	0.575	0.20
169_P	198_I	0.574	0.20
77_E	237_V	0.574	0.20
138_E	203_E	0.571	0.20
41_P	165_S	0.567	0.20
28_L	56_I	0.564	0.20
115_W	241_P	0.563	0.20
156_A	174_T	0.562	0.19
63_R	117_F	0.560	0.19
21_W	225_W	0.560	0.19
114_F	154_L	0.559	0.19
176_Q	180_V	0.558	0.19
123_H	204_A	0.557	0.19
44_P	217_Y	0.557	0.19
114_F	180_V	0.556	0.19
45_G	89_A	0.554	0.19
54_L	181_F	0.552	0.19
18_L	23_R	0.544	0.19
155_C	202_L	0.542	0.19
24_I	73_P	0.538	0.19
56_I	232_D	0.537	0.18
199_R	216_W	0.537	0.18
174_T	181_F	0.536	0.18
145_C	175_F	0.536	0.18
77_E	219_G	0.535	0.18
44_P	48_A	0.534	0.18
66_R	93_V	0.532	0.18
132_D	135_A	0.532	0.18
41_P	227_Q	0.530	0.18
156_A	211_H	0.527	0.18
70_E	197_L	0.525	0.18
67_T	72_A	0.522	0.18
70_E	203_E	0.522	0.18
47_Q	145_C	0.521	0.18
86_G	145_C	0.519	0.18
69_E	138_E	0.519	0.18
65_N	123_H	0.519	0.18
180_V	230_L	0.518	0.18
52_D	92_V	0.518	0.18
162_A	165_S	0.516	0.18
148_G	181_F	0.515	0.18
110_Y	209_P	0.513	0.18
148_G	175_F	0.513	0.18
31_E	121_L	0.513	0.18
89_A	202_L	0.512	0.17
40_F	44_P	0.512	0.17
110_Y	242_F	0.510	0.17
169_P	234_E	0.506	0.17
133_I	151_Y	0.505	0.17
89_A	173_V	0.504	0.17
133_I	217_Y	0.504	0.17
24_I	65_N	0.503	0.17
175_F	223_R	0.502	0.17
18_L	147_D	0.502	0.17
132_D	136_D	0.500	0.17

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4g6uB	1	0.4229	15.9	0.968	Contact Map
2g18A	3	0.3004	8.3	0.972	Contact Map
2gkpA	1	0.4071	8	0.972	Contact Map
2g8lA	2	0.3241	5.7	0.974	Contact Map
4qr2A	2	0.2332	5	0.975	Contact Map
1vykA	1	0.1344	4.5	0.975	Contact Map
3okpA	1	0.4348	4.1	0.976	Contact Map
3h3gB	1	0.0791	3.3	0.977	Contact Map
3ngxA	2	0.2569	3.3	0.977	Contact Map
4obuE	2	0.3439	3.1	0.977	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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