MSMX - BACSU - GREMLIN Contacts

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MSMX - Maltodextrin import ATP-binding protein MsmX

UniProt:	P94360	Sequences: MAELRMEHIYKFYDQKEPAVDDFNLHIADKEFIVFVGPSGCGKSTTLRMVAGLEEISKGDFYIEGKRVNDVAPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKMPKPEIKKRVEEAAKILGLEEYLHRKPKALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVQMRAEIIKLHQRLQTTTIYVTHDQTEALTMATRIVVMKDGKIQQIGTPKDVYEFPENVFVGGFIGSPAMNFFKGKLTDGLIKIGSAALTVPEGKMKVLREKGYIGKEVIFGIRPEDIHDELIVVESYKNSSIKAKINVAELLGSEIMIYSQIDNQDFIARIDARLDIQSGDELTVAFDMNKGHFFDSETEVRIR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	365 (310)
Sequences:	18131 (13198)
Seq/√Len:	749.6

ECOLI - YCJV MALK UGPC FBPC CYSA POTG POTA PROV MODC YDCT METN RBSA SAPD DPPD DPPF ARAG YEHX OPPD YADG DDPD OPPF MACB YHES GSIA DDPF UUP YECC LSRA YTFR CYDC MLAF TAUB HISP MDLB FEPC LPTB NIKE MSBA MDLA SAPF SSUB YOJI FECE FHUC YPHE GLNQ CYDD PHNC ALSA YHDZ XYLG GLTL THIQ ETTA PHNK SUFC MODF LIVG ARTP MGLA PSTB FTSE LIVF ZNUC NIKD LOLD BTUD YEJF CCMA YBBA FETA YDDA PHNL YNJD YBHF YBIT
BACSU - MSMX YURJ YVRA OPUAA OPUCA OPUBA TAGH METN OPPD YFIL YKFD DPPD APPF YKPA APPD YXLF YHCH RBSA YDBJ YFMM YHAQ YCBN YVFR OPPF YTRB FHUC YDIF YHEH SUNT YFMF ECFA1 YFIC YUSV YTLC YFIB ECSA TCYN SKFE BCEA YFMR YVCR YKNV YGAD CYDD YKNU YCLP BMRA YLMA YHEI YWJA ALBC YXDL SUFC MNTB YKOD TCYC NATA YXEO ECFA2 GLNQ FTSE SSUB ARTM CYDC PSTB1 YTHP YVRO YCLH ZNUC PSTB2 YJKB YUFO YKNY YYBJ EXPZ YHCG YYDI YTRE
HALSA - Q9HHQ5 Q9HR06 Q9HNZ9 Q9HMX3 Q9HMW0 Q9HMT3 BTUDA Q9HMX2 Q9HMU8 Q9HRJ6 PHNC Q9HMG1 PSTB2 Q9HRH8 Q9HSQ7 Q9HHM2 Q9HMG6 Q9HRV7 Q9HNY3 Q9HRZ9 Y2317 Y1631 PSTB1 Q9HHR7 Q9HR96 Q9HR21 Q9HT03 Q9HS04 Q9HQA8 Q9HMC1 Q9HMW1
SULSO - Q97YY4 Q97UF2 Q97UY8 Q97ZC0 Q97VC1 Q97UH3 Q97VF5 Q7LX64 Q97UJ9 Q97YP3 Q97VH6 Q97VK8 Q97VK9 Q97UD4 Q97VF4 Q97YK2 Q97X18 Q97YP7 Q97YP8 Q97YQ7 Y1893 Q97U54 Y2030 Q97Z03 Q980W0 Q97V01 PSTB Q97UH4 Q97W42 Q97V00 Q7LY07 Q7LXM4 Q97VY4 Q97VM2 Q97Z56 Q7LX80 Q97UG5 Q97Z96 Q97UC2 Q97YP4 Q97ZU0 Q980K5 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
217_G	221_D	4.528	1.00
60_D	67_R	4.119	1.00
34_V	202_A	3.983	1.00
8_H	22_D	3.952	1.00
31_E	204_R	3.768	1.00
7_E	60_D	3.710	1.00
5_R	26_H	3.651	1.00
120_K	125_E	3.519	1.00
18_P	21_D	3.256	1.00
112_K	116_E	3.202	1.00
21_D	212_K	2.823	1.00
214_Q	228_N	2.788	1.00
218_T	221_D	2.683	1.00
33_I	206_V	2.668	1.00
94_Y	98_A	2.643	1.00
127_Y	130_R	2.618	1.00
107_P	110_E	2.553	1.00
7_E	62_Y	2.459	1.00
10_Y	18_P	2.438	1.00
94_Y	129_H	2.437	1.00
5_R	62_Y	2.422	1.00
28_A	31_E	2.410	1.00
10_Y	58_K	2.401	1.00
8_H	24_N	2.393	1.00
6_M	9_I	2.392	1.00
94_Y	112_K	2.294	1.00
114_R	152_D	2.285	1.00
11_K	49_M	2.281	1.00
10_Y	22_D	2.200	1.00
12_F	18_P	2.196	1.00
94_Y	116_E	2.153	1.00
77_D	154_K	2.152	1.00
4_L	155_V	2.141	1.00
123_G	172_Q	2.070	1.00
20_V	49_M	2.066	1.00
62_Y	67_R	2.051	1.00
64_E	154_K	2.044	1.00
47_L	191_V	2.005	1.00
199_L	220_K	1.979	1.00
206_V	216_I	1.969	1.00
49_M	56_I	1.953	1.00
119_A	128_L	1.943	1.00
209_K	214_Q	1.914	1.00
9_I	56_I	1.912	1.00
229_V	280_I	1.907	1.00
50_V	189_I	1.892	1.00
11_K	57_S	1.857	1.00
113_K	117_E	1.839	1.00
206_V	213_I	1.817	1.00
110_E	113_K	1.763	1.00
109_P	113_K	1.740	1.00
48_R	54_E	1.684	1.00
11_K	54_E	1.668	1.00
68_V	71_V	1.661	1.00
229_V	242_F	1.651	1.00
114_R	117_E	1.629	1.00
158_M	188_T	1.623	1.00
63_I	68_V	1.623	1.00
49_M	61_F	1.595	1.00
122_L	146_G	1.576	1.00
6_M	50_V	1.555	1.00
233_G	242_F	1.540	1.00
6_M	25_L	1.523	1.00
23_F	46_T	1.498	1.00
118_A	150_V	1.487	1.00
66_K	154_K	1.477	1.00
98_A	115_V	1.473	1.00
94_Y	115_V	1.467	1.00
67_R	70_D	1.466	1.00
12_F	57_S	1.457	1.00
117_E	120_K	1.446	1.00
66_K	71_V	1.409	1.00
256_S	259_L	1.405	1.00
16_K	19_A	1.404	1.00
106_M	111_I	1.398	1.00
33_I	216_I	1.390	1.00
56_I	61_F	1.385	1.00
252_I	256_S	1.364	1.00
259_L	262_P	1.362	1.00
220_K	224_E	1.360	1.00
274_Y	277_K	1.358	1.00
116_E	120_K	1.356	1.00
246_K	278_E	1.345	1.00
110_E	114_R	1.330	1.00
47_L	157_L	1.330	1.00
25_L	206_V	1.322	1.00
106_M	110_E	1.317	1.00
10_Y	21_D	1.315	1.00
229_V	233_G	1.304	1.00
20_V	23_F	1.285	1.00
27_I	33_I	1.282	1.00
98_A	111_I	1.279	1.00
181_H	186_T	1.278	1.00
6_M	46_T	1.270	1.00
92_T	131_K	1.248	1.00
60_D	69_N	1.248	1.00
111_I	115_V	1.244	1.00
33_I	204_R	1.234	1.00
310_A	319_I	1.231	1.00
242_F	280_I	1.218	1.00
48_R	53_L	1.215	1.00
92_T	95_D	1.209	1.00
12_F	58_K	1.202	1.00
20_V	46_T	1.202	1.00
91_M	99_F	1.199	1.00
95_D	98_A	1.193	1.00
7_E	24_N	1.192	1.00
79_A	148_A	1.189	1.00
95_D	102_K	1.185	1.00
254_I	257_A	1.182	1.00
178_I	201_M	1.176	1.00
252_I	255_G	1.153	1.00
181_H	188_T	1.150	1.00
12_F	19_A	1.150	1.00
28_A	204_R	1.139	1.00
93_V	135_L	1.123	1.00
204_R	216_I	1.122	1.00
263_E	266_M	1.101	1.00
41_C	208_M	1.091	1.00
71_V	75_D	1.090	1.00
90_H	133_K	1.084	1.00
221_D	225_F	1.074	1.00
244_K	278_E	1.067	1.00
296_E	299_K	1.066	1.00
88_Y	100_G	1.066	1.00
257_A	260_T	1.062	1.00
9_I	61_F	1.053	1.00
116_E	128_L	1.052	1.00
117_E	152_D	1.046	1.00
258_A	261_V	1.039	1.00
261_V	264_G	1.035	1.00
273_G	277_K	1.032	1.00
108_K	112_K	1.031	1.00
9_I	49_M	1.031	1.00
25_L	216_I	1.028	1.00
253_K	256_S	1.027	1.00
117_E	121_I	1.026	1.00
273_G	276_G	1.025	1.00
61_F	68_V	1.023	1.00
213_I	216_I	1.016	1.00
312_L	317_I	1.016	1.00
299_K	302_S	1.008	1.00
207_V	231_V	1.000	1.00
87_L	132_P	0.997	1.00
72_A	75_D	0.985	1.00
96_N	147_R	0.980	1.00
79_A	153_A	0.975	1.00
46_T	208_M	0.974	1.00
207_V	222_V	0.970	1.00
100_G	151_R	0.970	1.00
56_I	69_N	0.968	1.00
97_I	146_G	0.967	1.00
260_T	263_E	0.965	1.00
262_P	265_K	0.964	1.00
99_F	103_L	0.962	1.00
257_A	261_V	0.960	1.00
8_H	58_K	0.960	1.00
62_Y	65_G	0.958	1.00
88_Y	91_M	0.952	1.00
253_K	257_A	0.951	1.00
178_I	182_Q	0.946	1.00
29_D	64_E	0.945	1.00
116_E	125_E	0.944	1.00
12_F	15_Q	0.943	1.00
27_I	187_T	0.942	1.00
297_S	300_N	0.938	1.00
178_I	200_T	0.935	1.00
32_F	201_M	0.933	1.00
241_N	245_G	0.932	1.00
305_A	308_N	0.929	1.00
102_K	108_K	0.922	1.00
31_E	203_T	0.921	1.00
264_G	267_K	0.917	1.00
36_V	207_V	0.917	1.00
224_E	312_L	0.914	1.00
258_A	263_E	0.909	1.00
220_K	312_L	0.905	1.00
98_A	102_K	0.897	1.00
94_Y	128_L	0.897	1.00
104_R	151_R	0.893	1.00
118_A	121_I	0.893	1.00
170_R	194_D	0.892	1.00
131_K	134_A	0.889	1.00
223_Y	286_E	0.887	1.00
5_R	65_G	0.886	1.00
34_V	198_A	0.883	1.00
30_K	185_Q	0.879	1.00
51_A	157_L	0.878	1.00
244_K	280_I	0.874	1.00
258_A	262_P	0.873	1.00
307_I	319_I	0.864	1.00
269_L	272_K	0.864	1.00
162_L	190_Y	0.863	1.00
91_M	95_D	0.855	1.00
30_K	187_T	0.854	1.00
296_E	300_N	0.849	1.00
192_T	198_A	0.847	1.00
118_A	149_I	0.840	1.00
272_K	276_G	0.839	1.00
6_M	61_F	0.839	1.00
35_F	206_V	0.838	1.00
32_F	181_H	0.837	1.00
13_Y	19_A	0.833	1.00
219_P	223_Y	0.830	1.00
145_L	158_M	0.818	1.00
97_I	119_A	0.816	1.00
259_L	264_G	0.812	1.00
97_I	150_V	0.812	1.00
245_G	279_V	0.808	1.00
156_F	186_T	0.807	1.00
123_G	126_E	0.806	1.00
285_P	289_H	0.806	1.00
97_I	100_G	0.802	1.00
190_Y	202_A	0.801	1.00
252_I	257_A	0.800	1.00
152_D	186_T	0.799	1.00
259_L	263_E	0.797	1.00
32_F	188_T	0.794	1.00
262_P	266_M	0.793	1.00
49_M	57_S	0.793	1.00
130_R	134_A	0.791	1.00
223_Y	226_P	0.788	1.00
283_I	288_I	0.786	1.00
253_K	258_A	0.784	1.00
78_I	155_V	0.784	1.00
276_G	279_V	0.779	1.00
283_I	286_E	0.778	1.00
87_L	96_N	0.777	1.00
7_E	26_H	0.776	1.00
12_F	16_K	0.770	1.00
209_K	230_F	0.768	1.00
269_L	273_G	0.766	1.00
256_S	260_T	0.765	1.00
160_E	193_H	0.763	1.00
79_A	151_R	0.761	1.00
196_T	313_L	0.759	1.00
38_P	41_C	0.759	1.00
162_L	177_I	0.757	1.00
118_A	122_L	0.753	1.00
256_S	262_P	0.753	1.00
239_A	242_F	0.747	1.00
251_L	256_S	0.746	1.00
171_V	175_A	0.745	1.00
108_K	111_I	0.744	1.00
167_A	171_V	0.741	1.00
179_K	309_V	0.739	1.00
255_G	259_L	0.739	1.00
49_M	54_E	0.738	1.00
276_G	283_I	0.738	1.00
119_A	124_L	0.737	1.00
261_V	265_K	0.736	1.00
266_M	270_R	0.735	1.00
14_D	18_P	0.732	1.00
283_I	287_D	0.724	1.00
83_Q	164_N	0.718	1.00
154_K	186_T	0.718	1.00
158_M	190_Y	0.712	1.00
209_K	212_K	0.712	1.00
180_L	186_T	0.711	1.00
267_K	270_R	0.704	1.00
41_C	46_T	0.701	1.00
173_M	176_E	0.700	1.00
249_D	252_I	0.699	1.00
233_G	237_S	0.699	1.00
282_G	285_P	0.698	1.00
44_S	48_R	0.697	1.00
313_L	318_M	0.696	1.00
250_G	253_K	0.695	1.00
85_Y	164_N	0.694	1.00
260_T	264_G	0.690	1.00
263_E	269_L	0.690	1.00
15_Q	18_P	0.688	1.00
274_Y	279_V	0.688	1.00
284_R	288_I	0.688	1.00
198_A	202_A	0.687	1.00
243_F	247_L	0.687	1.00
258_A	264_G	0.682	1.00
63_I	78_I	0.679	1.00
91_M	96_N	0.678	1.00
252_I	259_L	0.676	1.00
257_A	265_K	0.675	1.00
132_P	143_V	0.673	1.00
254_I	258_A	0.672	1.00
266_M	269_L	0.668	1.00
102_K	111_I	0.668	1.00
281_F	285_P	0.667	1.00
29_D	154_K	0.665	1.00
241_N	244_K	0.664	1.00
281_F	284_R	0.664	1.00
157_L	189_I	0.663	1.00
222_V	226_P	0.663	1.00
240_M	243_F	0.662	1.00
242_F	245_G	0.661	1.00
115_V	118_A	0.659	1.00
301_S	305_A	0.658	1.00
208_M	213_I	0.657	1.00
156_F	188_T	0.657	1.00
261_V	266_M	0.657	1.00
257_A	262_P	0.656	1.00
255_G	258_A	0.655	1.00
176_E	179_K	0.653	1.00
282_G	286_E	0.651	1.00
295_V	299_K	0.650	1.00
172_Q	176_E	0.649	1.00
112_K	115_V	0.647	1.00
274_Y	278_E	0.647	1.00
35_F	208_M	0.647	1.00
127_Y	139_Q	0.646	1.00
35_F	46_T	0.646	1.00
256_S	261_V	0.643	1.00
270_R	273_G	0.643	1.00
276_G	284_R	0.642	1.00
79_A	188_T	0.642	1.00
309_V	312_L	0.637	1.00
106_M	114_R	0.637	1.00
296_E	301_S	0.636	1.00
248_T	253_K	0.636	1.00
81_V	148_A	0.633	1.00
51_A	80_M	0.629	1.00
240_M	282_G	0.629	1.00
255_G	261_V	0.628	1.00
33_I	189_I	0.625	1.00
175_A	320_Y	0.625	1.00
251_L	254_I	0.624	1.00
96_N	132_P	0.624	1.00
121_I	149_I	0.624	1.00
204_R	215_Q	0.623	1.00
238_P	282_G	0.622	1.00
308_N	320_Y	0.621	1.00
245_G	252_I	0.621	1.00
175_A	309_V	0.619	1.00
286_E	290_D	0.617	1.00
94_Y	111_I	0.616	1.00
153_A	156_F	0.615	1.00
101_L	104_R	0.615	1.00
276_G	288_I	0.613	1.00
307_I	314_G	0.613	1.00
178_I	312_L	0.613	1.00
263_E	268_V	0.613	1.00
300_N	306_K	0.612	1.00
77_D	104_R	0.612	1.00
247_L	250_G	0.611	1.00
285_P	288_I	0.610	1.00
276_G	280_I	0.610	1.00
306_K	309_V	0.609	1.00
119_A	122_L	0.609	1.00
256_S	264_G	0.604	1.00
238_P	242_F	0.604	1.00
21_D	210_D	0.600	1.00
281_F	288_I	0.597	1.00
300_N	303_I	0.597	1.00
317_I	320_Y	0.596	1.00
121_I	179_K	0.596	1.00
114_R	118_A	0.596	1.00
253_K	262_P	0.596	1.00
196_T	200_T	0.595	1.00
302_S	305_A	0.594	1.00
232_G	236_G	0.594	1.00
100_G	103_L	0.593	1.00
271_E	274_Y	0.593	1.00
301_S	304_K	0.591	1.00
235_I	238_P	0.591	1.00
168_K	233_G	0.590	1.00
295_V	298_Y	0.590	1.00
260_T	265_K	0.589	1.00
100_G	104_R	0.587	1.00
231_V	235_I	0.587	1.00
126_E	139_Q	0.586	1.00
23_F	213_I	0.585	1.00
142_R	165_L	0.585	1.00
35_F	189_I	0.585	1.00
295_V	301_S	0.584	1.00
94_Y	97_I	0.583	1.00
307_I	310_A	0.582	1.00
264_G	268_V	0.581	1.00
207_V	226_P	0.579	1.00
251_L	258_A	0.578	1.00
13_Y	54_E	0.578	1.00
298_Y	302_S	0.575	1.00
11_K	45_T	0.574	1.00
22_D	58_K	0.573	1.00
267_K	271_E	0.572	1.00
251_L	255_G	0.572	1.00
254_I	259_L	0.571	1.00
295_V	300_N	0.570	1.00
93_V	143_V	0.570	1.00
83_Q	137_G	0.570	1.00
171_V	237_S	0.569	1.00
202_A	205_I	0.569	1.00
271_E	275_I	0.567	1.00
241_N	246_K	0.566	1.00
259_L	265_K	0.566	1.00
170_R	197_E	0.566	1.00
255_G	263_E	0.564	1.00
119_A	125_E	0.564	1.00
125_E	128_L	0.564	1.00
297_S	303_I	0.563	1.00
304_K	307_I	0.562	1.00
219_P	222_V	0.562	1.00
163_S	167_A	0.561	1.00
99_F	102_K	0.561	1.00
124_L	127_Y	0.561	1.00
298_Y	301_S	0.560	1.00
167_A	174_R	0.555	1.00
268_V	271_E	0.554	1.00
88_Y	96_N	0.552	1.00
31_E	216_I	0.549	1.00
179_K	308_N	0.549	1.00
190_Y	198_A	0.548	1.00
297_S	301_S	0.547	1.00
265_K	269_L	0.547	1.00
280_I	284_R	0.546	1.00
6_M	23_F	0.544	1.00
281_F	286_E	0.542	1.00
155_V	187_T	0.542	1.00
248_T	251_L	0.541	1.00
257_A	263_E	0.541	1.00
300_N	307_I	0.541	1.00
313_L	316_E	0.541	1.00
118_A	146_G	0.540	1.00
124_L	128_L	0.539	1.00
251_L	259_L	0.538	1.00
62_Y	69_N	0.537	1.00
39_S	160_E	0.536	1.00
286_E	289_H	0.535	1.00
178_I	203_T	0.535	1.00
12_F	21_D	0.533	1.00
89_P	133_K	0.533	1.00
280_I	286_E	0.531	1.00
163_S	174_R	0.531	1.00
232_G	237_S	0.530	1.00
39_S	193_H	0.528	1.00
311_E	314_G	0.528	1.00
27_I	189_I	0.528	1.00
259_L	266_M	0.527	1.00
109_P	112_K	0.527	1.00
164_N	174_R	0.526	1.00
50_V	157_L	0.525	1.00
113_K	116_E	0.525	1.00
171_V	196_T	0.525	1.00
305_A	309_V	0.523	1.00
277_K	280_I	0.521	1.00
255_G	260_T	0.520	1.00
92_T	96_N	0.519	1.00
111_I	114_R	0.518	1.00
106_M	150_V	0.517	1.00
268_V	272_K	0.517	1.00
252_I	258_A	0.516	1.00
88_Y	151_R	0.514	1.00
252_I	260_T	0.513	1.00
270_R	274_Y	0.513	1.00
145_L	201_M	0.513	1.00
107_P	111_I	0.512	1.00
8_H	11_K	0.511	1.00
81_V	141_Q	0.511	1.00
21_D	24_N	0.510	1.00
241_N	247_L	0.509	1.00
191_V	195_Q	0.506	1.00
100_G	147_R	0.506	1.00
310_A	314_G	0.505	1.00
299_K	307_I	0.505	1.00
164_N	170_R	0.503	1.00
283_I	290_D	0.502	1.00
260_T	266_M	0.501	1.00
177_I	188_T	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1v43A	2	0.9562	100	0.121	Contact Map
2it1A	1	0.9781	100	0.125	Contact Map
1g291	4	0.989	100	0.134	Contact Map
2yyzA	1	0.9699	100	0.134	Contact Map
3rlfA	2	0.9808	100	0.14	Contact Map
1oxxK	1	0.9452	100	0.153	Contact Map
4tquS	2	0.9918	100	0.173	Contact Map
3fvqA	2	0.9452	100	0.181	Contact Map
3d31A	2	0.9425	100	0.182	Contact Map
1z47A	2	0.9342	100	0.191	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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