GREMLIN Database
YXJI - Uncharacterized protein YxjI
UniProt: P94352 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 162 (153)
Sequences: 1027 (736)
Seq/√Len: 59.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
21_D25_Q5.4621.00
57_K66_E4.5141.00
116_M142_C4.0051.00
131_L142_C3.8351.00
45_D49_K3.2671.00
10_M126_G2.7351.00
67_I75_C2.6301.00
52_V144_A2.6251.00
80_K89_V2.6191.00
42_Q50_T2.3621.00
114_V117_S2.2241.00
31_E44_T2.1611.00
4_L27_T2.1511.00
17_F150_D2.0951.00
107_Q117_S2.0521.00
110_D113_N1.9621.00
86_P90_I1.9541.00
19_I126_G1.9331.00
3_E22_R1.9201.00
60_S64_R1.8301.00
16_A31_E1.7500.99
64_R78_T1.6790.99
117_S132_Q1.5940.99
15_D120_K1.5130.98
107_Q114_V1.5060.98
54_I67_I1.4870.98
14_K32_G1.4790.98
20_Y26_E1.4760.98
8_Q149_L1.4510.98
55_E68_S1.4180.97
3_E132_Q1.4150.97
108_L116_M1.3980.97
105_E119_S1.3890.97
36_S40_S1.3810.97
137_E142_C1.3670.96
77_V148_V1.3510.96
121_K124_S1.3350.96
69_I72_K1.3130.96
57_K60_S1.2820.95
20_Y131_L1.2550.94
6_M131_L1.2470.94
135_Y138_D1.2310.94
29_K48_G1.2200.93
5_F128_S1.2150.93
19_I30_V1.2130.93
10_M125_W1.2120.93
40_S65_Y1.1890.93
41_L147_I1.1830.92
99_G129_Y1.1820.92
106_F127_D1.1620.92
108_L142_C1.1550.91
62_L78_T1.1480.91
57_K109_T1.1290.90
118_V150_D1.0950.89
57_K64_R1.0880.89
151_M155_N1.0850.89
4_L51_L1.0760.88
8_Q150_D1.0730.88
97_I108_L1.0720.88
114_V134_A1.0610.88
115_R137_E1.0490.87
40_S55_E1.0430.87
32_G41_L1.0430.87
131_L143_T1.0410.86
17_F149_L1.0380.86
16_A33_R1.0300.86
136_E139_V1.0260.86
77_V107_Q1.0200.85
18_H26_E1.0130.85
12_S55_E1.0040.84
44_T48_G1.0030.84
8_Q148_V0.9860.83
127_D146_A0.9820.83
95_W115_R0.9700.82
28_F139_V0.9690.82
109_T114_V0.9640.82
41_L151_M0.9610.82
17_F118_V0.9540.81
6_M10_M0.9530.81
141_I145_I0.9510.81
115_R136_E0.9490.81
5_F19_I0.9490.81
33_R42_Q0.9380.80
4_L131_L0.9340.80
61_L72_K0.9340.80
5_F10_M0.9340.80
7_K128_S0.9270.79
30_V147_I0.9190.79
62_L81_V0.9140.78
121_K127_D0.9140.78
115_R150_D0.9110.78
6_M120_K0.9020.77
99_G150_D0.9000.77
9_K12_S0.9000.77
29_K117_S0.8910.77
42_Q53_S0.8830.76
84_S90_I0.8810.76
69_I138_D0.8800.76
129_Y146_A0.8670.75
38_G56_Q0.8650.74
7_K126_G0.8630.74
35_F56_Q0.8610.74
87_K96_E0.8590.74
28_F39_D0.8540.73
53_S73_T0.8520.73
116_M131_L0.8510.73
59_M66_E0.8470.73
13_F20_Y0.8430.73
31_E117_S0.8420.72
121_K130_H0.8400.72
104_D122_W0.8360.72
39_D154_Y0.8330.72
116_M152_V0.8300.71
19_I80_K0.8290.71
47_S89_V0.8290.71
100_D148_V0.8290.71
72_K141_I0.8180.70
6_M142_C0.8160.70
77_V97_I0.8160.70
40_S92_G0.8120.70
63_P144_A0.8050.69
79_K85_K0.7960.68
78_T109_T0.7940.68
131_L134_A0.7910.68
68_S95_W0.7880.67
97_I137_E0.7750.66
137_E143_T0.7730.66
47_S116_M0.7720.66
84_S100_D0.7710.66
61_L87_K0.7710.66
37_L58_L0.7700.66
71_G81_V0.7700.66
91_S100_D0.7610.65
99_G147_I0.7560.64
14_K34_F0.7550.64
95_W106_F0.7530.64
104_D153_L0.7530.64
64_R76_E0.7400.62
33_R44_T0.7340.62
27_T98_D0.7290.61
102_W123_L0.7250.61
10_M29_K0.7240.61
7_K10_M0.7200.60
61_L83_F0.7180.60
13_F147_I0.7130.60
28_F68_S0.7070.59
18_H43_M0.7020.58
10_M19_I0.6950.58
93_L136_E0.6930.57
5_F130_H0.6910.57
56_Q60_S0.6910.57
92_G108_L0.6900.57
79_K82_T0.6830.56
63_P79_K0.6820.56
56_Q106_F0.6820.56
4_L19_I0.6750.55
144_A151_M0.6670.55
98_D142_C0.6660.54
122_W148_V0.6620.54
33_R125_W0.6540.53
47_S133_I0.6540.53
65_Y148_V0.6530.53
54_I66_E0.6530.53
18_H44_T0.6530.53
8_Q129_Y0.6480.52
15_D30_V0.6420.52
11_F127_D0.6320.51
97_I145_I0.6270.50
59_M147_I0.6200.49
151_M154_Y0.6180.49
95_W151_M0.6170.49
75_C104_D0.6160.49
65_Y153_L0.6160.49
91_S114_V0.6080.48
38_G105_E0.6080.48
78_T87_K0.6010.47
133_I139_V0.6010.47
43_M143_T0.5970.47
32_G35_F0.5970.47
49_K98_D0.5970.47
35_F59_M0.5870.46
17_F99_G0.5860.46
6_M19_I0.5840.45
121_K143_T0.5830.45
15_D33_R0.5760.44
52_V148_V0.5740.44
96_E130_H0.5730.44
109_T112_E0.5730.44
7_K32_G0.5700.44
60_S81_V0.5700.44
62_L80_K0.5690.44
81_V91_S0.5680.44
129_Y150_D0.5650.43
49_K111_G0.5630.43
25_Q49_K0.5630.43
27_T139_V0.5630.43
69_I73_T0.5620.43
12_S128_S0.5590.43
24_E131_L0.5550.42
25_Q70_G0.5540.42
72_K140_L0.5540.42
100_D103_R0.5510.42
12_S37_L0.5510.42
74_V147_I0.5470.41
26_E116_M0.5460.41
75_C93_L0.5450.41
14_K136_E0.5440.41
7_K28_F0.5420.41
22_R63_P0.5400.40
9_K13_F0.5370.40
8_Q12_S0.5360.40
21_D141_I0.5350.40
54_I77_V0.5340.40
29_K66_E0.5300.39
110_D115_R0.5250.39
26_E65_Y0.5240.39
43_M70_G0.5230.39
65_Y75_C0.5230.39
89_V110_D0.5220.39
28_F33_R0.5210.38
4_L101_L0.5130.38
54_I123_L0.5120.38
97_I111_G0.5080.37
40_S68_S0.5070.37
10_M20_Y0.5070.37
14_K118_V0.5050.37
75_C130_H0.5050.37
5_F11_F0.5040.37
106_F120_K0.5030.37
54_I130_H0.5000.36
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1zxuA 1 0.8272 100 0.343 Contact Map
3lhnA 4 0.3642 16.4 0.943 Contact Map
1ufgA 1 0.3889 14.5 0.944 Contact Map
4u3qA 1 0.284 9.1 0.949 Contact Map
2v2fA 1 0.0926 8.4 0.95 Contact Map
3umnA 1 0.3642 7.1 0.951 Contact Map
3my2A 2 0.7099 6.9 0.952 Contact Map
4kc5A 2 0.3272 6.9 0.952 Contact Map
2vnlA 3 0.5926 5.8 0.953 Contact Map
1ifrA 1 0.3457 5.3 0.954 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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