GREMLIN Database
OHRB - Organic hydroperoxide resistance protein OhrB
UniProt: P80242 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 136 (130)
Sequences: 1897 (1164)
Seq/√Len: 102.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
109_Q113_N3.2841.00
67_Q114_A3.1551.00
104_D107_K3.0931.00
105_R109_Q2.7341.00
63_V118_F2.5491.00
79_V94_V2.5281.00
95_T132_K2.4721.00
7_K78_Q2.4551.00
100_T108_A2.3481.00
97_V134_E2.2971.00
80_S93_G2.1921.00
18_I50_A2.1271.00
57_G73_S2.0891.00
77_G96_L2.0551.00
78_Q97_V1.9771.00
19_T26_D1.9741.00
9_T76_E1.9061.00
22_D46_Q1.9001.00
95_T134_E1.8801.00
110_E114_A1.7161.00
98_V112_V1.7131.00
82_M93_G1.6961.00
17_H28_D1.6901.00
67_Q110_E1.6861.00
62_H66_E1.6751.00
82_M91_K1.6441.00
107_K110_E1.6231.00
17_H26_D1.5411.00
7_K21_D1.5401.00
24_V41_G1.5341.00
5_T78_Q1.4901.00
60_L111_L1.4631.00
69_I107_K1.4601.00
18_I27_F1.4461.00
125_T129_V1.3781.00
57_G61_E1.3761.00
10_A18_I1.3710.99
52_Y94_V1.3690.99
64_A71_I1.3500.99
56_F112_V1.3260.99
42_T46_Q1.3210.99
8_V20_S1.3070.99
19_T23_G1.3040.99
6_A21_D1.2970.99
53_A77_G1.2860.99
124_A128_N1.2540.99
113_N117_E1.2310.99
93_G132_K1.2300.99
10_A53_A1.2100.99
7_K76_E1.2030.99
78_Q95_T1.1960.99
3_L35_K1.1910.99
8_V49_A1.1800.98
116_H122_S1.1670.98
10_A57_G1.1630.98
74_E99_N1.0950.97
30_V41_G1.0880.97
94_V129_V1.0750.97
35_K81_L1.0530.97
103_L107_K1.0470.97
5_T80_S1.0370.97
31_M35_K1.0320.96
20_S24_V1.0250.96
75_I98_V1.0100.96
20_S42_T1.0070.96
125_T128_N1.0030.96
9_T21_D1.0010.96
33_N37_E0.9970.96
20_S50_A0.9950.96
76_E99_N0.9820.95
98_V133_L0.9800.95
48_F125_T0.9750.95
38_G41_G0.9640.95
33_N36_K0.9500.94
48_F121_Y0.9430.94
116_H131_V0.9340.94
117_E126_R0.9260.94
65_K70_E0.9190.93
30_V40_T0.9160.93
87_D123_K0.9090.93
62_H118_F0.8950.92
80_S95_T0.8830.92
106_E109_Q0.8790.92
110_E113_N0.8710.91
30_V38_G0.8610.91
66_E114_A0.8480.90
52_Y122_S0.8440.90
91_K130_D0.8410.90
64_A111_L0.8390.90
65_K68_N0.8370.90
15_A31_M0.8150.88
83_K123_K0.8040.88
58_G61_E0.7980.87
24_V42_T0.7880.87
24_V38_G0.7860.86
58_G92_I0.7770.86
62_H65_K0.7670.85
34_A39_Q0.7630.85
5_T93_G0.7620.85
8_V50_A0.7590.84
51_G121_Y0.7540.84
93_G129_V0.7490.84
30_V34_A0.7490.84
56_F133_L0.7490.84
60_L98_V0.7470.83
4_F43_N0.7450.83
60_L67_Q0.7440.83
112_V133_L0.7420.83
24_V40_T0.7410.83
21_D42_T0.7360.83
73_S100_T0.7320.82
100_T103_L0.7310.82
43_N46_Q0.7230.81
60_L115_A0.7190.81
118_F123_K0.7180.81
34_A37_E0.7110.80
24_V30_V0.7110.80
29_I64_A0.7110.80
57_G74_E0.6940.79
58_G62_H0.6930.79
109_Q133_L0.6860.78
70_E102_D0.6830.78
99_N105_R0.6830.78
36_K39_Q0.6810.77
72_D101_K0.6740.77
25_L42_T0.6620.75
6_A75_I0.6580.75
62_H90_F0.6520.74
58_G81_L0.6430.73
89_G123_K0.6430.73
114_A117_E0.6390.73
55_C116_H0.6390.73
83_K87_D0.6310.72
4_F35_K0.6280.72
113_N133_L0.6270.71
13_G16_G0.6260.71
67_Q107_K0.6260.71
86_S89_G0.6240.71
63_V67_Q0.6220.71
126_R131_V0.6190.70
106_E110_E0.6190.70
52_Y116_H0.6170.70
57_G65_K0.6160.70
49_A79_V0.6160.70
96_L131_V0.6130.70
57_G75_I0.6120.70
86_S123_K0.6070.69
23_G26_D0.6010.68
60_L73_S0.6000.68
63_V114_A0.5980.68
103_L108_A0.5950.67
88_G123_K0.5930.67
60_L69_I0.5890.67
14_R124_A0.5870.66
76_E97_V0.5820.66
58_G123_K0.5800.66
4_F46_Q0.5790.65
27_F42_T0.5720.64
9_T74_E0.5660.64
48_F79_V0.5660.64
123_K126_R0.5650.64
64_A73_S0.5620.63
6_A78_Q0.5620.63
31_M38_G0.5610.63
48_F52_Y0.5590.63
91_K123_K0.5580.63
53_A57_G0.5570.62
28_D40_T0.5520.62
29_I42_T0.5460.61
26_D50_A0.5450.61
48_F131_V0.5420.60
11_R74_E0.5360.59
83_K90_F0.5340.59
24_V39_Q0.5330.59
10_A29_I0.5320.59
43_N51_G0.5310.59
20_S23_G0.5310.59
124_A127_G0.5280.58
60_L103_L0.5280.58
81_L89_G0.5270.58
124_A129_V0.5270.58
101_K105_R0.5270.58
68_N107_K0.5260.58
15_A38_G0.5250.58
18_I41_G0.5240.58
66_E103_L0.5220.58
21_D34_A0.5180.57
53_A71_I0.5160.57
3_L130_D0.5140.56
90_F123_K0.5110.56
42_T50_A0.5090.56
96_L133_L0.5090.56
114_A118_F0.5030.55
4_F36_K0.5030.55
9_T19_T0.5000.54
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2bjoA 2 0.9853 100 0.452 Contact Map
4nozA 2 0.9853 100 0.453 Contact Map
1n2fA 2 0.9853 100 0.46 Contact Map
1uspA 2 0.9853 100 0.464 Contact Map
1zb9A 2 0.9853 100 0.474 Contact Map
2ql8A 2 0.9559 100 0.475 Contact Map
3eerA 2 0.9853 100 0.479 Contact Map
4mh4A 2 0.9632 100 0.483 Contact Map
1nyeA 5 0.9632 100 0.487 Contact Map
2d7vA 2 0.9853 100 0.494 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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