GREMLIN Database
YWNH - Putative phosphinothricin acetyltransferase YwnH
UniProt: P71043 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 163 (158)
Sequences: 4407 (3318)
Seq/√Len: 263.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
98_S133_K3.1011.00
138_E141_L2.7551.00
4_R56_E2.6651.00
4_R10_D2.5401.00
137_A143_P2.3931.00
132_E138_E2.2501.00
98_S134_H2.1131.00
57_D63_A2.0731.00
63_A91_C2.0031.00
105_L116_L1.9461.00
53_Y103_E1.8511.00
103_E106_R1.8441.00
66_I104_A1.8131.00
105_L160_R1.8131.00
11_L43_F1.7891.00
68_F108_A1.7821.00
109_P160_R1.7741.00
129_K132_E1.7731.00
114_R144_G1.7661.00
20_S89_E1.7361.00
5_L107_I1.7331.00
55_A96_V1.6701.00
8_H44_S1.6681.00
57_D94_K1.6521.00
87_I96_V1.6191.00
15_V36_P1.6011.00
98_S102_Q1.5891.00
105_L136_F1.5871.00
103_E107_I1.5791.00
13_A16_A1.5551.00
128_L158_L1.5501.00
141_L156_K1.5441.00
56_E60_G1.5381.00
141_L154_D1.5381.00
102_Q134_H1.4871.00
81_A113_I1.4701.00
81_A116_L1.4671.00
12_E16_A1.4551.00
122_G154_D1.4531.00
12_E36_P1.4471.00
19_N34_V1.4421.00
8_H40_M1.4381.00
88_D91_C1.4161.00
23_A33_P1.4161.00
107_I111_L1.4061.00
122_G156_K1.4001.00
107_I110_N1.3821.00
115_S161_E1.3741.00
68_F81_A1.3651.00
61_N88_D1.3321.00
26_M153_Y1.3311.00
143_P159_G1.3291.00
37_E40_M1.3281.00
19_N23_A1.3211.00
91_C94_K1.3201.00
6_A14_V1.3001.00
119_F155_L1.2931.00
20_S24_S1.2861.00
139_W159_G1.2591.00
21_T25_R1.2561.00
36_P40_M1.2541.00
6_A43_F1.2521.00
142_F157_I1.2381.00
83_V116_L1.2371.00
138_E156_K1.2151.00
142_F145_I1.1971.00
11_L15_V1.1881.00
22_I28_T1.1741.00
63_A96_V1.1681.00
17_I62_V1.0951.00
128_L156_K1.0851.00
53_Y107_I1.0831.00
41_E45_G1.0811.00
147_E152_R1.0721.00
144_G161_E1.0721.00
119_F157_I1.0531.00
132_E158_L1.0501.00
125_K129_K1.0461.00
35_T38_D1.0391.00
61_N90_A1.0331.00
64_A87_I1.0321.00
138_E158_L1.0321.00
39_R42_W1.0301.00
3_L100_L1.0191.00
50_R70_T1.0181.00
25_R149_D1.0141.00
120_I131_F1.0111.00
30_D42_W1.0091.00
13_A88_D1.0051.00
144_G154_D1.0021.00
115_S159_G0.9921.00
40_M44_S0.9891.00
118_A158_L0.9741.00
11_L36_P0.9701.00
108_A116_L0.9671.00
15_V19_N0.9561.00
16_A88_D0.9561.00
54_V62_V0.9551.00
46_H69_E0.9551.00
120_I127_S0.9541.00
61_N91_C0.9371.00
106_R110_N0.9371.00
128_L132_E0.9251.00
30_D74_R0.9201.00
57_D91_C0.9191.00
20_S88_D0.9181.00
80_T145_I0.9131.00
57_D61_N0.9121.00
120_I158_L0.9101.00
72_Y119_F0.9081.00
106_R109_P0.9011.00
10_D56_E0.9001.00
41_E44_S0.8991.00
43_F52_L0.8961.00
127_S131_F0.8921.00
66_I100_L0.8891.00
114_R152_R0.8871.00
121_F153_Y0.8751.00
89_E92_R0.8721.00
15_V39_R0.8711.00
83_V118_A0.8591.00
128_L138_E0.8450.99
3_L99_Y0.8450.99
31_T75_P0.8440.99
145_I155_L0.8430.99
24_S89_E0.8390.99
21_T27_V0.8390.99
52_L67_S0.8340.99
75_P78_N0.8270.99
105_L134_H0.8230.99
3_L53_Y0.8200.99
13_A61_N0.8110.99
42_W52_L0.8020.99
99_Y103_E0.7970.99
101_L134_H0.7950.99
26_M149_D0.7840.99
129_K133_K0.7830.99
117_M159_G0.7800.99
102_Q106_R0.7800.99
123_H153_Y0.7730.99
18_Y28_T0.7650.99
55_A64_A0.7560.99
49_S78_N0.7510.99
79_K147_E0.7500.99
80_T117_M0.7440.99
123_H151_K0.7380.99
114_R161_E0.7350.99
6_A52_L0.7270.98
35_T41_E0.7250.98
6_A11_L0.7240.98
147_E150_G0.7240.98
29_A121_F0.7150.98
83_V101_L0.7120.98
55_A100_L0.7100.98
11_L14_V0.7060.98
139_W143_P0.7030.98
118_A131_F0.7000.98
5_L47_T0.6960.98
115_S145_I0.6900.98
18_Y30_D0.6850.98
71_F117_M0.6840.98
87_I91_C0.6830.98
46_H52_L0.6780.98
21_T92_R0.6730.97
34_V39_R0.6720.97
95_G98_S0.6710.97
18_Y22_I0.6630.97
119_F142_F0.6610.97
19_N33_P0.6600.97
79_K152_R0.6560.97
29_A146_A0.6550.97
83_V131_F0.6500.97
18_Y86_Y0.6480.97
6_A54_V0.6470.97
19_N22_I0.6460.97
13_A17_I0.6450.97
137_A159_G0.6450.97
86_Y127_S0.6430.97
93_G97_G0.6430.97
122_G141_L0.6380.97
4_R54_V0.6350.96
43_F47_T0.6320.96
18_Y74_R0.6310.96
85_I131_F0.6290.96
120_I128_L0.6260.96
124_N128_L0.6220.96
25_R148_M0.6160.96
96_V100_L0.6080.95
145_I159_G0.6060.95
117_M142_F0.6030.95
126_P130_L0.6030.95
45_G48_E0.6010.95
38_D41_E0.6010.95
37_E41_E0.5980.95
105_L130_L0.5980.95
99_Y102_Q0.5940.95
8_H43_F0.5930.95
8_H11_L0.5930.95
31_T78_N0.5900.95
32_E75_P0.5870.95
132_E137_A0.5860.94
18_Y65_W0.5860.94
50_R113_I0.5860.94
20_S92_R0.5860.94
70_T73_G0.5840.94
12_E40_M0.5830.94
14_V52_L0.5790.94
21_T86_Y0.5780.94
55_A63_A0.5760.94
144_G152_R0.5750.94
65_W84_S0.5740.94
17_I65_W0.5730.94
26_M151_K0.5710.94
139_W142_F0.5700.94
20_S23_A0.5690.94
125_K132_E0.5680.94
26_M148_M0.5650.93
30_D34_V0.5600.93
115_S139_W0.5580.93
31_T79_K0.5520.93
65_W86_Y0.5490.92
130_L134_H0.5470.92
121_F155_L0.5440.92
17_I86_Y0.5390.92
143_P154_D0.5380.92
28_T74_R0.5330.91
85_I101_L0.5300.91
39_R43_F0.5270.91
34_V38_D0.5250.91
137_A161_E0.5130.90
56_E59_N0.5120.90
39_R52_L0.5090.89
46_H67_S0.5080.89
3_L103_E0.5050.89
68_F104_A0.5010.89
152_R161_E0.5000.88
96_V99_Y0.5000.88
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2j8mA 2 1 100 0.279 Contact Map
3dr6A 2 0.9939 100 0.282 Contact Map
4j3gA 2 0.9877 100 0.335 Contact Map
4h89A 2 0.9816 100 0.378 Contact Map
4mbuA 2 0.9939 100 0.402 Contact Map
2jlmA 3 1 100 0.403 Contact Map
1vhsA 1 0.9939 100 0.405 Contact Map
4jxqA 2 0.9877 100 0.411 Contact Map
1yr0A 2 0.9877 100 0.414 Contact Map
3w6sA 2 0.9693 100 0.415 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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