PSPA - BACSU - GREMLIN Contacts

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PSPA - Phage shock protein A homolog

UniProt:	P54617	Sequences: MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKREYHECQADMEKMESYAMKALQAGNESDARKFLERKTSLESKLSELQAANQIAATNAAQMRKMHDKLVSDIGELEARKNMIKAKWAVAKTQERMNKLGASVSSTSQSMSAFGRMEDKVNKALDQANAMAELNSAPQDDMADLSAKYDTGGSSQVDDELAALKAKMMLDK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	227 (216)
Sequences:	1628 (1068)
Seq/√Len:	72.6

ECOLI - PSPA YJFJ
BACSU - PSPA LIAH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
79_L	84_E	5.582	1.00
76_M	222_K	4.494	1.00
68_M	101_L	3.428	1.00
65_Q	105_Q	2.900	1.00
105_Q	109_Q	2.891	1.00
58_K	62_H	2.845	1.00
88_R	213_D	2.813	1.00
72_E	76_M	2.810	1.00
61_Y	105_Q	2.807	1.00
142_K	180_L	2.609	1.00
31_Q	35_N	2.572	1.00
214_D	217_A	2.475	1.00
150_E	182_Q	2.461	1.00
147_K	151_R	2.353	1.00
94_K	215_E	2.341	1.00
2_S	5_G	2.332	1.00
135_R	173_E	2.287	1.00
61_Y	101_L	2.160	1.00
84_E	220_K	2.147	1.00
71_M	74_Y	2.117	1.00
54_E	112_A	2.116	1.00
30_D	136_K	2.108	1.00
70_K	74_Y	2.093	1.00
76_M	80_Q	2.033	1.00
44_K	126_V	2.023	1.00
217_A	221_A	1.935	1.00
61_Y	65_Q	1.931	1.00
76_M	219_L	1.930	1.00
109_Q	113_T	1.926	1.00
65_Q	101_L	1.921	1.00
98_E	102_S	1.848	1.00
131_E	135_R	1.828	1.00
218_A	222_K	1.827	1.00
72_E	222_K	1.819	1.00
6_R	23_E	1.791	1.00
8_K	12_S	1.789	1.00
37_N	133_E	1.782	1.00
102_S	105_Q	1.756	1.00
213_D	217_A	1.744	1.00
68_M	98_E	1.713	1.00
72_E	218_A	1.691	1.00
146_A	183_A	1.687	1.00
218_A	221_A	1.681	1.00
196_D	199_D	1.677	1.00
14_N	27_K	1.626	0.99
31_Q	34_R	1.615	0.99
75_A	219_L	1.615	0.99
47_T	118_M	1.606	0.99
95_T	211_Q	1.585	0.99
213_D	223_M	1.572	0.99
65_Q	69_E	1.565	0.99
215_E	218_A	1.537	0.99
69_E	73_S	1.528	0.99
70_K	73_S	1.514	0.99
178_K	182_Q	1.508	0.99
113_T	117_Q	1.464	0.99
197_M	200_L	1.446	0.99
20_D	23_E	1.422	0.99
197_M	201_S	1.412	0.99
54_E	115_A	1.401	0.98
199_D	202_A	1.394	0.98
202_A	205_D	1.390	0.98
201_S	205_D	1.388	0.98
86_D	204_Y	1.374	0.98
30_D	140_K	1.343	0.98
61_Y	108_N	1.329	0.98
79_L	219_L	1.322	0.98
102_S	106_A	1.293	0.97
200_L	203_K	1.293	0.97
54_E	58_K	1.280	0.97
47_T	122_H	1.256	0.97
112_A	116_A	1.253	0.97
56_R	60_E	1.225	0.96
94_K	98_E	1.222	0.96
99_S	102_S	1.209	0.96
12_S	35_N	1.195	0.96
20_D	34_R	1.178	0.95
88_R	212_V	1.174	0.95
66_A	70_K	1.171	0.95
79_L	220_K	1.171	0.95
22_A	27_K	1.171	0.95
33_L	129_I	1.167	0.95
76_M	223_M	1.159	0.95
121_M	124_K	1.157	0.95
35_N	38_S	1.146	0.95
214_D	218_A	1.120	0.94
201_S	204_Y	1.118	0.94
171_R	174_D	1.111	0.94
79_L	223_M	1.107	0.94
73_S	76_M	1.082	0.93
13_A	17_A	1.072	0.93
165_S	169_F	1.068	0.92
185_A	189_L	1.045	0.92
92_E	96_S	1.043	0.91
139_I	176_V	1.043	0.91
77_K	81_A	1.039	0.91
62_H	65_Q	1.025	0.91
197_M	203_K	1.025	0.91
143_W	147_K	1.009	0.90
62_H	66_A	1.007	0.90
111_A	115_A	0.999	0.90
127_S	131_E	0.996	0.89
58_K	108_N	0.992	0.89
83_N	200_L	0.992	0.89
17_A	27_K	0.985	0.89
28_M	31_Q	0.970	0.88
35_N	39_D	0.968	0.88
128_D	131_E	0.961	0.88
150_E	154_K	0.956	0.87
198_A	201_S	0.953	0.87
174_D	178_K	0.941	0.87
85_S	200_L	0.941	0.87
68_M	94_K	0.932	0.86
54_E	108_N	0.931	0.86
84_E	178_K	0.918	0.85
40_L	129_I	0.915	0.85
71_M	93_R	0.914	0.85
64_C	97_L	0.910	0.85
11_M	18_L	0.899	0.84
15_I	18_L	0.899	0.84
29_V	169_F	0.899	0.84
17_A	21_K	0.898	0.84
116_A	120_K	0.886	0.83
123_D	127_S	0.885	0.83
140_K	144_A	0.879	0.83
24_N	27_K	0.879	0.83
125_L	132_L	0.875	0.82
75_A	91_L	0.863	0.81
26_E	144_A	0.861	0.81
10_I	29_V	0.854	0.81
200_L	204_Y	0.847	0.80
93_R	96_S	0.842	0.80
9_D	168_A	0.834	0.79
67_D	97_L	0.825	0.78
9_D	12_S	0.821	0.78
64_C	100_K	0.820	0.78
150_E	183_A	0.812	0.77
86_D	197_M	0.809	0.77
38_S	42_K	0.805	0.77
72_E	94_K	0.804	0.77
219_L	223_M	0.804	0.77
13_A	21_K	0.799	0.76
61_Y	109_Q	0.797	0.76
84_E	88_R	0.794	0.76
129_I	168_A	0.791	0.76
15_I	22_A	0.787	0.75
199_D	214_D	0.786	0.75
18_L	22_A	0.786	0.75
99_S	211_Q	0.785	0.75
74_Y	77_K	0.785	0.75
91_L	94_K	0.779	0.74
39_D	43_V	0.776	0.74
89_K	92_E	0.774	0.74
60_E	63_E	0.771	0.74
57_A	61_Y	0.770	0.74
19_L	23_E	0.763	0.73
151_R	154_K	0.763	0.73
37_N	129_I	0.761	0.73
9_D	28_M	0.761	0.73
106_A	109_Q	0.760	0.73
109_Q	112_A	0.755	0.72
29_V	136_K	0.753	0.72
9_D	136_K	0.748	0.71
12_S	31_Q	0.748	0.71
63_E	69_E	0.745	0.71
101_L	209_S	0.745	0.71
39_D	187_A	0.739	0.70
137_N	146_A	0.736	0.70
108_N	112_A	0.736	0.70
71_M	90_F	0.729	0.69
80_Q	223_M	0.728	0.69
3_I	15_I	0.724	0.69
9_D	19_L	0.722	0.69
13_A	28_M	0.722	0.69
16_N	34_R	0.721	0.69
110_I	114_N	0.719	0.68
77_K	80_Q	0.718	0.68
111_A	114_N	0.712	0.68
40_L	56_R	0.709	0.67
49_A	67_D	0.708	0.67
63_E	66_A	0.708	0.67
32_Y	71_M	0.707	0.67
219_L	222_K	0.705	0.67
16_N	149_Q	0.705	0.67
29_V	172_M	0.704	0.67
29_V	36_M	0.704	0.67
167_S	202_A	0.701	0.66
72_E	98_E	0.701	0.66
47_T	50_V	0.699	0.66
6_R	25_P	0.697	0.66
26_E	132_L	0.696	0.66
157_A	160_S	0.694	0.66
9_D	14_N	0.691	0.65
71_M	201_S	0.684	0.64
66_A	209_S	0.682	0.64
55_Q	184_N	0.681	0.64
106_A	217_A	0.680	0.64
72_E	79_L	0.679	0.64
86_D	200_L	0.676	0.64
63_E	116_A	0.672	0.63
83_N	86_D	0.668	0.63
30_D	138_M	0.663	0.62
191_S	203_K	0.663	0.62
130_G	134_A	0.662	0.62
15_I	99_S	0.661	0.62
75_A	185_A	0.660	0.62
40_L	48_A	0.659	0.62
169_F	179_A	0.659	0.62
141_A	188_E	0.655	0.61
58_K	112_A	0.655	0.61
46_E	144_A	0.651	0.61
99_S	103_E	0.651	0.61
168_A	172_M	0.646	0.60
64_C	104_L	0.643	0.60
26_E	30_D	0.643	0.60
107_A	111_A	0.641	0.59
95_T	212_V	0.641	0.59
74_Y	144_A	0.639	0.59
114_N	117_Q	0.638	0.59
59_R	181_D	0.637	0.59
47_T	148_T	0.635	0.59
154_K	174_D	0.633	0.59
6_R	13_A	0.630	0.58
40_L	126_V	0.628	0.58
91_L	95_T	0.628	0.58
26_E	128_D	0.627	0.58
20_D	28_M	0.625	0.58
152_M	161_S	0.624	0.57
33_L	37_N	0.624	0.57
104_L	107_A	0.623	0.57
72_E	92_E	0.623	0.57
36_M	132_L	0.621	0.57
153_N	156_G	0.621	0.57
48_A	56_R	0.617	0.57
50_V	168_A	0.614	0.56
79_L	213_D	0.614	0.56
28_M	176_V	0.610	0.56
84_E	87_A	0.608	0.56
51_M	119_R	0.602	0.55
169_F	173_E	0.602	0.55
14_N	22_A	0.601	0.55
124_K	127_S	0.596	0.54
76_M	218_A	0.594	0.54
74_Y	90_F	0.594	0.54
154_K	186_M	0.593	0.54
55_Q	58_K	0.592	0.54
3_I	10_I	0.592	0.54
114_N	121_M	0.592	0.54
19_L	22_A	0.588	0.53
11_M	15_I	0.587	0.53
95_T	215_E	0.587	0.53
90_F	201_S	0.587	0.53
77_K	187_A	0.586	0.53
60_E	171_R	0.585	0.53
112_A	130_G	0.584	0.53
66_A	127_S	0.580	0.52
68_M	103_E	0.579	0.52
69_E	106_A	0.579	0.52
143_W	172_M	0.576	0.52
102_S	205_D	0.575	0.51
90_F	128_D	0.574	0.51
102_S	203_K	0.573	0.51
88_R	91_L	0.571	0.51
51_M	183_A	0.571	0.51
40_L	43_V	0.570	0.51
39_D	153_N	0.566	0.50
52_A	197_M	0.565	0.50
98_E	101_L	0.564	0.50
120_K	163_S	0.562	0.50
176_V	181_D	0.561	0.50
203_K	209_S	0.560	0.50
96_S	100_K	0.554	0.49
9_D	35_N	0.553	0.49
64_C	101_L	0.551	0.48
92_E	212_V	0.548	0.48
198_A	202_A	0.547	0.48
78_A	128_D	0.547	0.48
87_A	91_L	0.546	0.48
12_S	19_L	0.546	0.48
220_K	223_M	0.546	0.48
199_D	203_K	0.546	0.48
50_V	145_V	0.545	0.48
4_I	210_S	0.544	0.48
89_K	200_L	0.542	0.47
46_E	53_E	0.541	0.47
47_T	51_M	0.538	0.47
25_P	90_F	0.538	0.47
23_E	28_M	0.536	0.47
170_G	221_A	0.535	0.47
57_A	111_A	0.535	0.47
216_L	220_K	0.535	0.47
44_K	179_A	0.533	0.46
170_G	174_D	0.532	0.46
2_S	108_N	0.531	0.46
51_M	115_A	0.529	0.46
9_D	129_I	0.529	0.46
206_T	214_D	0.528	0.46
88_R	95_T	0.528	0.46
174_D	177_N	0.528	0.46
89_K	93_R	0.525	0.45
14_N	17_A	0.521	0.45
142_K	146_A	0.520	0.45
74_Y	83_N	0.517	0.44
33_L	133_E	0.516	0.44
179_A	182_Q	0.514	0.44
117_Q	121_M	0.513	0.44
36_M	48_A	0.513	0.44
106_A	110_I	0.513	0.44
20_D	99_S	0.512	0.44
50_V	111_A	0.511	0.44
95_T	209_S	0.511	0.44
105_Q	108_N	0.510	0.43
120_K	148_T	0.509	0.43
175_K	178_K	0.508	0.43
135_R	202_A	0.508	0.43
32_Y	168_A	0.506	0.43
65_Q	68_M	0.505	0.43
40_L	44_K	0.504	0.43
79_L	87_A	0.503	0.43
91_L	183_A	0.503	0.43
33_L	136_K	0.502	0.42
69_E	72_E	0.501	0.42
32_Y	172_M	0.501	0.42
121_M	180_L	0.500	0.42

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1i84S	2	0.4273	94.2	0.882	Contact Map
2gd5A	2	0.6784	88.1	0.9	Contact Map
3frtA	1	0.6123	86.9	0.901	Contact Map
4iloA	3	0.7048	86.4	0.902	Contact Map
3ojaB	1	0.5374	81.7	0.908	Contact Map
4abmA	2	0.348	81.6	0.908	Contact Map
3ghgA	2	0.6652	81.3	0.908	Contact Map
1c1gA	2	0.9295	78	0.911	Contact Map
4cgkA	3	0.6564	77.9	0.911	Contact Map
3mq9A	4	0.5419	64	0.92	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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